Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3609 and GFF3610 are separated by 268 nucleotides GFF3610 and GFF3611 are separated by 8 nucleotides
GFF3609 - ABC transporter, ATP-binding protein 1 (cluster 4, leucine/isoleucine/valine/benzoate), at 122,507 to 123,328
GFF3609
GFF3610 - ABC transporter, ATP-binding protein 2 (cluster 4, leucine/isoleucine/valine/benzoate), at 123,597 to 124,370
GFF3610
GFF3611 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 124,379 to 126,235
GFF3611
Position (kb) 123
124
125 Strain fitness (log2 ratio) -1
0
1
2 at 122.675 kb on + strand, within GFF3609 at 122.676 kb on - strand, within GFF3609 at 122.993 kb on + strand, within GFF3609 at 122.994 kb on - strand, within GFF3609 at 123.222 kb on + strand, within GFF3609 at 123.223 kb on - strand, within GFF3609 at 123.223 kb on - strand, within GFF3609 at 123.223 kb on - strand, within GFF3609 at 123.639 kb on + strand at 123.640 kb on - strand at 123.640 kb on - strand at 123.640 kb on - strand at 123.680 kb on - strand, within GFF3610 at 123.703 kb on + strand, within GFF3610 at 123.704 kb on - strand, within GFF3610 at 123.822 kb on + strand, within GFF3610 at 123.823 kb on - strand, within GFF3610 at 123.912 kb on + strand, within GFF3610 at 123.912 kb on + strand, within GFF3610 at 123.913 kb on - strand, within GFF3610 at 123.960 kb on + strand, within GFF3610 at 123.960 kb on + strand, within GFF3610 at 123.961 kb on - strand, within GFF3610 at 123.966 kb on + strand, within GFF3610 at 123.966 kb on + strand, within GFF3610 at 123.966 kb on + strand, within GFF3610 at 123.966 kb on + strand, within GFF3610 at 123.966 kb on + strand, within GFF3610 at 123.967 kb on - strand, within GFF3610 at 123.967 kb on - strand, within GFF3610 at 124.224 kb on + strand, within GFF3610 at 124.224 kb on + strand, within GFF3610 at 124.224 kb on + strand, within GFF3610 at 124.224 kb on + strand, within GFF3610 at 124.225 kb on - strand, within GFF3610 at 124.225 kb on - strand, within GFF3610 at 124.225 kb on - strand, within GFF3610 at 124.225 kb on - strand, within GFF3610 at 124.369 kb on - strand at 124.369 kb on - strand at 124.567 kb on - strand, within GFF3611 at 124.694 kb on + strand, within GFF3611 at 124.695 kb on - strand, within GFF3611 at 124.724 kb on + strand, within GFF3611 at 124.724 kb on + strand, within GFF3611 at 124.724 kb on + strand, within GFF3611 at 124.724 kb on + strand, within GFF3611 at 124.725 kb on - strand, within GFF3611 at 124.725 kb on - strand, within GFF3611 at 124.988 kb on + strand, within GFF3611 at 124.988 kb on + strand, within GFF3611 at 124.989 kb on - strand, within GFF3611 at 125.048 kb on + strand, within GFF3611 at 125.049 kb on - strand, within GFF3611 at 125.049 kb on - strand, within GFF3611 at 125.064 kb on - strand, within GFF3611 at 125.150 kb on + strand, within GFF3611 at 125.162 kb on + strand, within GFF3611 at 125.162 kb on + strand, within GFF3611 at 125.162 kb on + strand, within GFF3611 at 125.162 kb on + strand, within GFF3611 at 125.163 kb on - strand, within GFF3611 at 125.163 kb on - strand, within GFF3611 at 125.163 kb on - strand, within GFF3611 at 125.163 kb on - strand, within GFF3611 at 125.273 kb on + strand, within GFF3611 at 125.274 kb on - strand, within GFF3611 at 125.327 kb on + strand, within GFF3611 at 125.328 kb on - strand, within GFF3611 at 125.328 kb on - strand, within GFF3611 at 125.328 kb on - strand, within GFF3611
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 122,675 + GFF3609 0.20 +0.4 122,676 - GFF3609 0.21 -0.3 122,993 + GFF3609 0.59 -0.4 122,994 - GFF3609 0.59 -0.0 123,222 + GFF3609 0.87 +1.4 123,223 - GFF3609 0.87 -0.2 123,223 - GFF3609 0.87 -0.5 123,223 - GFF3609 0.87 +1.4 123,639 + -0.7 123,640 - +2.0 123,640 - +0.9 123,640 - -0.7 123,680 - GFF3610 0.11 -1.0 123,703 + GFF3610 0.14 -0.5 123,704 - GFF3610 0.14 +0.1 123,822 + GFF3610 0.29 -0.5 123,823 - GFF3610 0.29 -0.7 123,912 + GFF3610 0.41 -0.2 123,912 + GFF3610 0.41 -0.4 123,913 - GFF3610 0.41 -1.1 123,960 + GFF3610 0.47 -0.7 123,960 + GFF3610 0.47 +1.0 123,961 - GFF3610 0.47 -0.2 123,966 + GFF3610 0.48 -0.4 123,966 + GFF3610 0.48 -0.4 123,966 + GFF3610 0.48 -0.9 123,966 + GFF3610 0.48 +0.0 123,966 + GFF3610 0.48 -0.4 123,967 - GFF3610 0.48 +0.1 123,967 - GFF3610 0.48 -0.4 124,224 + GFF3610 0.81 -1.1 124,224 + GFF3610 0.81 +0.1 124,224 + GFF3610 0.81 -0.5 124,224 + GFF3610 0.81 +0.1 124,225 - GFF3610 0.81 +0.6 124,225 - GFF3610 0.81 -1.0 124,225 - GFF3610 0.81 +1.0 124,225 - GFF3610 0.81 -1.1 124,369 - +1.0 124,369 - +0.2 124,567 - GFF3611 0.10 -0.7 124,694 + GFF3611 0.17 -0.6 124,695 - GFF3611 0.17 +0.1 124,724 + GFF3611 0.19 -0.2 124,724 + GFF3611 0.19 +0.1 124,724 + GFF3611 0.19 +0.0 124,724 + GFF3611 0.19 -0.4 124,725 - GFF3611 0.19 -0.5 124,725 - GFF3611 0.19 +2.0 124,988 + GFF3611 0.33 +0.7 124,988 + GFF3611 0.33 -0.5 124,989 - GFF3611 0.33 +0.8 125,048 + GFF3611 0.36 -1.4 125,049 - GFF3611 0.36 +0.6 125,049 - GFF3611 0.36 +0.3 125,064 - GFF3611 0.37 +0.5 125,150 + GFF3611 0.42 -1.4 125,162 + GFF3611 0.42 +1.1 125,162 + GFF3611 0.42 -0.1 125,162 + GFF3611 0.42 -0.0 125,162 + GFF3611 0.42 +1.0 125,163 - GFF3611 0.42 -0.5 125,163 - GFF3611 0.42 -0.4 125,163 - GFF3611 0.42 +0.3 125,163 - GFF3611 0.42 +0.7 125,273 + GFF3611 0.48 +1.3 125,274 - GFF3611 0.48 -0.5 125,327 + GFF3611 0.51 -0.0 125,328 - GFF3611 0.51 +0.7 125,328 - GFF3611 0.51 +0.1 125,328 - GFF3611 0.51 -0.2
Or see this region's nucleotide sequence