Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3577 and GFF3578 are separated by 116 nucleotides GFF3578 and GFF3579 overlap by 4 nucleotides GFF3579 and GFF3580 overlap by 43 nucleotides
GFF3577 - Transcriptional regulator, LysR family, at 88,551 to 89,441
GFF3577
GFF3578 - Glutathione S-transferase, unnamed subgroup (EC 2.5.1.18), at 89,558 to 90,217
GFF3578
GFF3579 - probable iron-sulfur binding protein YPO1417, at 90,214 to 91,203
GFF3579
GFF3580 - COG2124: Cytochrome P450, at 91,161 to 92,330
GFF3580
Position (kb) 89
90
91 Strain fitness (log2 ratio) -1
0
1 at 88.633 kb on + strand at 88.633 kb on + strand at 88.633 kb on + strand at 88.634 kb on - strand at 88.720 kb on + strand, within GFF3577 at 88.720 kb on + strand, within GFF3577 at 88.721 kb on - strand, within GFF3577 at 88.721 kb on - strand, within GFF3577 at 88.930 kb on + strand, within GFF3577 at 88.931 kb on - strand, within GFF3577 at 89.089 kb on + strand, within GFF3577 at 89.089 kb on + strand, within GFF3577 at 89.125 kb on + strand, within GFF3577 at 89.125 kb on + strand, within GFF3577 at 89.125 kb on + strand, within GFF3577 at 89.125 kb on + strand, within GFF3577 at 89.125 kb on + strand, within GFF3577 at 89.125 kb on + strand, within GFF3577 at 89.125 kb on + strand, within GFF3577 at 89.125 kb on + strand, within GFF3577 at 89.125 kb on + strand, within GFF3577 at 89.125 kb on + strand, within GFF3577 at 89.125 kb on + strand, within GFF3577 at 89.125 kb on + strand, within GFF3577 at 89.125 kb on + strand, within GFF3577 at 89.125 kb on + strand, within GFF3577 at 89.126 kb on - strand, within GFF3577 at 89.126 kb on - strand, within GFF3577 at 89.126 kb on - strand, within GFF3577 at 89.126 kb on - strand, within GFF3577 at 89.126 kb on - strand, within GFF3577 at 89.126 kb on - strand, within GFF3577 at 89.126 kb on - strand, within GFF3577 at 89.126 kb on - strand, within GFF3577 at 89.126 kb on - strand, within GFF3577 at 89.126 kb on - strand, within GFF3577 at 89.126 kb on - strand, within GFF3577 at 89.126 kb on - strand, within GFF3577 at 89.126 kb on - strand, within GFF3577 at 89.126 kb on - strand, within GFF3577 at 89.248 kb on + strand, within GFF3577 at 89.248 kb on + strand, within GFF3577 at 89.603 kb on + strand at 89.604 kb on - strand at 89.805 kb on - strand, within GFF3578 at 89.819 kb on + strand, within GFF3578 at 89.912 kb on + strand, within GFF3578 at 90.075 kb on - strand, within GFF3578 at 90.080 kb on + strand, within GFF3578 at 90.081 kb on - strand, within GFF3578 at 90.081 kb on - strand, within GFF3578 at 90.081 kb on - strand, within GFF3578 at 90.081 kb on - strand, within GFF3578 at 90.081 kb on - strand, within GFF3578 at 90.081 kb on - strand, within GFF3578 at 90.351 kb on - strand, within GFF3579 at 90.640 kb on + strand, within GFF3579 at 90.641 kb on - strand, within GFF3579 at 90.830 kb on + strand, within GFF3579 at 90.830 kb on + strand, within GFF3579 at 90.830 kb on + strand, within GFF3579 at 90.831 kb on - strand, within GFF3579 at 90.831 kb on - strand, within GFF3579
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 88,633 + -0.6 88,633 + -0.1 88,633 + -1.0 88,634 - +0.0 88,720 + GFF3577 0.19 -0.1 88,720 + GFF3577 0.19 +0.4 88,721 - GFF3577 0.19 -0.7 88,721 - GFF3577 0.19 -0.6 88,930 + GFF3577 0.43 -0.7 88,931 - GFF3577 0.43 -0.3 89,089 + GFF3577 0.60 -0.0 89,089 + GFF3577 0.60 -0.2 89,125 + GFF3577 0.64 +0.1 89,125 + GFF3577 0.64 -0.2 89,125 + GFF3577 0.64 +0.4 89,125 + GFF3577 0.64 +0.1 89,125 + GFF3577 0.64 -0.5 89,125 + GFF3577 0.64 -1.1 89,125 + GFF3577 0.64 -1.2 89,125 + GFF3577 0.64 -1.2 89,125 + GFF3577 0.64 -0.6 89,125 + GFF3577 0.64 +0.2 89,125 + GFF3577 0.64 +0.9 89,125 + GFF3577 0.64 -0.7 89,125 + GFF3577 0.64 -1.4 89,125 + GFF3577 0.64 -0.4 89,126 - GFF3577 0.65 -0.1 89,126 - GFF3577 0.65 +0.6 89,126 - GFF3577 0.65 -0.7 89,126 - GFF3577 0.65 -0.2 89,126 - GFF3577 0.65 -0.5 89,126 - GFF3577 0.65 +1.0 89,126 - GFF3577 0.65 -0.4 89,126 - GFF3577 0.65 +0.4 89,126 - GFF3577 0.65 -0.0 89,126 - GFF3577 0.65 -0.6 89,126 - GFF3577 0.65 -0.1 89,126 - GFF3577 0.65 -0.6 89,126 - GFF3577 0.65 +0.6 89,126 - GFF3577 0.65 +0.1 89,248 + GFF3577 0.78 -0.7 89,248 + GFF3577 0.78 -0.3 89,603 + +0.1 89,604 - +0.2 89,805 - GFF3578 0.37 -1.0 89,819 + GFF3578 0.40 -0.3 89,912 + GFF3578 0.54 -1.2 90,075 - GFF3578 0.78 -0.0 90,080 + GFF3578 0.79 -0.9 90,081 - GFF3578 0.79 +0.4 90,081 - GFF3578 0.79 -0.3 90,081 - GFF3578 0.79 -0.9 90,081 - GFF3578 0.79 -0.9 90,081 - GFF3578 0.79 -0.4 90,081 - GFF3578 0.79 +0.0 90,351 - GFF3579 0.14 -0.0 90,640 + GFF3579 0.43 +0.1 90,641 - GFF3579 0.43 -0.4 90,830 + GFF3579 0.62 -0.0 90,830 + GFF3579 0.62 -0.0 90,830 + GFF3579 0.62 +0.1 90,831 - GFF3579 0.62 +0.1 90,831 - GFF3579 0.62 -0.1
Or see this region's nucleotide sequence