Strain Fitness in Variovorax sp. SCN45 around GFF3547

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3545 and GFF3547 are separated by 136 nucleotidesGFF3547 and GFF3546 overlap by 2 nucleotides GFF3545 - hypothetical protein, at 49,101 to 51,404 GFF3545 GFF3547 - no description, at 51,541 to 51,687 GFF3547 GFF3546 - Chaperone protein HtpG, at 51,686 to 53,722 GFF3546 Position (kb) 51 52Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 50.615 kb on - strand, within GFF3545at 50.728 kb on + strand, within GFF3545at 50.728 kb on + strand, within GFF3545at 50.728 kb on + strand, within GFF3545at 50.728 kb on + strand, within GFF3545at 50.728 kb on + strand, within GFF3545at 50.728 kb on + strand, within GFF3545at 50.729 kb on - strand, within GFF3545at 50.729 kb on - strand, within GFF3545at 50.729 kb on - strand, within GFF3545at 50.729 kb on - strand, within GFF3545at 50.729 kb on - strand, within GFF3545at 50.729 kb on - strand, within GFF3545at 50.761 kb on + strand, within GFF3545at 50.761 kb on + strand, within GFF3545at 50.761 kb on + strand, within GFF3545at 50.761 kb on + strand, within GFF3545at 50.761 kb on + strand, within GFF3545at 50.761 kb on + strand, within GFF3545at 50.761 kb on + strand, within GFF3545at 50.761 kb on + strand, within GFF3545at 50.761 kb on + strand, within GFF3545at 50.761 kb on + strand, within GFF3545at 50.761 kb on + strand, within GFF3545at 50.761 kb on + strand, within GFF3545at 50.762 kb on - strand, within GFF3545at 50.762 kb on - strand, within GFF3545at 50.762 kb on - strand, within GFF3545at 50.762 kb on - strand, within GFF3545at 50.762 kb on - strand, within GFF3545at 50.762 kb on - strand, within GFF3545at 50.762 kb on - strand, within GFF3545at 50.762 kb on - strand, within GFF3545at 50.762 kb on - strand, within GFF3545at 50.762 kb on - strand, within GFF3545at 50.762 kb on - strand, within GFF3545at 50.857 kb on + strand, within GFF3545at 50.857 kb on + strand, within GFF3545at 50.857 kb on + strand, within GFF3545at 50.857 kb on + strand, within GFF3545at 50.857 kb on + strand, within GFF3545at 50.858 kb on - strand, within GFF3545at 50.858 kb on - strand, within GFF3545at 50.941 kb on + strand, within GFF3545at 50.942 kb on - strand, within GFF3545at 50.942 kb on - strand, within GFF3545at 50.942 kb on - strand, within GFF3545at 50.942 kb on - strand, within GFF3545at 50.942 kb on - strand, within GFF3545at 50.948 kb on - strand, within GFF3545at 51.136 kb on + strand, within GFF3545at 51.136 kb on + strand, within GFF3545at 51.136 kb on + strand, within GFF3545at 51.464 kb on + strandat 51.464 kb on + strandat 51.464 kb on + strandat 51.465 kb on - strandat 51.465 kb on - strandat 51.465 kb on - strandat 51.482 kb on + strandat 51.482 kb on + strandat 51.482 kb on + strandat 51.482 kb on + strandat 51.482 kb on + strandat 51.482 kb on + strandat 51.482 kb on + strandat 51.482 kb on + strandat 51.482 kb on + strandat 51.483 kb on - strandat 51.483 kb on - strandat 51.483 kb on - strandat 51.483 kb on - strandat 51.483 kb on - strandat 51.483 kb on - strandat 51.483 kb on - strandat 51.483 kb on - strandat 51.568 kb on + strand, within GFF3547at 51.568 kb on + strand, within GFF3547at 51.568 kb on + strand, within GFF3547at 51.568 kb on + strand, within GFF3547at 51.568 kb on + strand, within GFF3547at 51.569 kb on - strand, within GFF3547at 51.673 kb on + strandat 51.674 kb on - strandat 51.703 kb on + strandat 51.704 kb on - strandat 51.704 kb on - strandat 51.726 kb on - strandat 51.765 kb on - strandat 51.776 kb on + strandat 51.860 kb on + strandat 51.860 kb on + strandat 51.860 kb on + strandat 51.860 kb on + strandat 51.861 kb on - strandat 51.861 kb on - strandat 51.861 kb on - strandat 51.861 kb on - strandat 51.861 kb on - strandat 51.861 kb on - strandat 51.861 kb on - strandat 51.998 kb on + strand, within GFF3546at 52.073 kb on + strand, within GFF3546at 52.073 kb on + strand, within GFF3546at 52.073 kb on + strand, within GFF3546at 52.073 kb on + strand, within GFF3546at 52.073 kb on + strand, within GFF3546at 52.073 kb on + strand, within GFF3546at 52.074 kb on - strand, within GFF3546at 52.074 kb on - strand, within GFF3546at 52.074 kb on - strand, within GFF3546at 52.074 kb on - strand, within GFF3546at 52.074 kb on - strand, within GFF3546at 52.074 kb on - strand, within GFF3546at 52.250 kb on + strand, within GFF3546at 52.250 kb on + strand, within GFF3546at 52.250 kb on + strand, within GFF3546at 52.250 kb on + strand, within GFF3546at 52.250 kb on + strand, within GFF3546at 52.251 kb on - strand, within GFF3546at 52.251 kb on - strand, within GFF3546at 52.251 kb on - strand, within GFF3546at 52.289 kb on + strand, within GFF3546at 52.289 kb on + strand, within GFF3546at 52.289 kb on + strand, within GFF3546at 52.289 kb on + strand, within GFF3546at 52.290 kb on - strand, within GFF3546at 52.290 kb on - strand, within GFF3546at 52.290 kb on - strand, within GFF3546at 52.290 kb on - strand, within GFF3546at 52.290 kb on - strand, within GFF3546at 52.290 kb on - strand, within GFF3546at 52.451 kb on + strand, within GFF3546at 52.451 kb on + strand, within GFF3546at 52.451 kb on + strand, within GFF3546at 52.451 kb on + strand, within GFF3546at 52.452 kb on - strand, within GFF3546at 52.452 kb on - strand, within GFF3546at 52.463 kb on + strand, within GFF3546at 52.463 kb on + strand, within GFF3546at 52.463 kb on + strand, within GFF3546at 52.463 kb on + strand, within GFF3546at 52.464 kb on - strand, within GFF3546at 52.464 kb on - strand, within GFF3546at 52.464 kb on - strand, within GFF3546at 52.464 kb on - strand, within GFF3546at 52.464 kb on - strand, within GFF3546at 52.464 kb on - strand, within GFF3546at 52.464 kb on - strand, within GFF3546at 52.464 kb on - strand, within GFF3546at 52.464 kb on - strand, within GFF3546at 52.464 kb on - strand, within GFF3546at 52.484 kb on + strand, within GFF3546at 52.484 kb on + strand, within GFF3546at 52.484 kb on + strand, within GFF3546at 52.484 kb on + strand, within GFF3546at 52.485 kb on - strand, within GFF3546at 52.485 kb on - strand, within GFF3546at 52.485 kb on - strand, within GFF3546at 52.485 kb on - strand, within GFF3546at 52.535 kb on + strand, within GFF3546at 52.535 kb on + strand, within GFF3546at 52.535 kb on + strand, within GFF3546at 52.536 kb on - strand, within GFF3546at 52.536 kb on - strand, within GFF3546at 52.536 kb on - strand, within GFF3546at 52.536 kb on - strand, within GFF3546at 52.536 kb on - strand, within GFF3546at 52.550 kb on + strand, within GFF3546at 52.550 kb on + strand, within GFF3546at 52.550 kb on + strand, within GFF3546at 52.550 kb on + strand, within GFF3546at 52.550 kb on + strand, within GFF3546at 52.550 kb on + strand, within GFF3546at 52.550 kb on + strand, within GFF3546at 52.550 kb on + strand, within GFF3546at 52.550 kb on + strand, within GFF3546at 52.550 kb on + strand, within GFF3546at 52.550 kb on + strand, within GFF3546at 52.550 kb on + strand, within GFF3546at 52.550 kb on + strand, within GFF3546at 52.550 kb on + strand, within GFF3546at 52.550 kb on + strand, within GFF3546at 52.550 kb on + strand, within GFF3546at 52.550 kb on + strand, within GFF3546at 52.550 kb on + strand, within GFF3546at 52.550 kb on + strand, within GFF3546at 52.550 kb on + strand, within GFF3546at 52.550 kb on + strand, within GFF3546at 52.551 kb on - strand, within GFF3546at 52.551 kb on - strand, within GFF3546at 52.551 kb on - strand, within GFF3546at 52.551 kb on - strand, within GFF3546at 52.551 kb on - strand, within GFF3546at 52.551 kb on - strand, within GFF3546at 52.551 kb on - strand, within GFF3546at 52.551 kb on - strand, within GFF3546at 52.551 kb on - strand, within GFF3546at 52.551 kb on - strand, within GFF3546at 52.551 kb on - strand, within GFF3546at 52.551 kb on - strand, within GFF3546at 52.551 kb on - strand, within GFF3546at 52.551 kb on - strand, within GFF3546at 52.613 kb on + strand, within GFF3546at 52.613 kb on + strand, within GFF3546at 52.613 kb on + strand, within GFF3546at 52.613 kb on + strand, within GFF3546at 52.613 kb on + strand, within GFF3546at 52.614 kb on - strand, within GFF3546at 52.614 kb on - strand, within GFF3546at 52.614 kb on - strand, within GFF3546at 52.614 kb on - strand, within GFF3546at 52.614 kb on - strand, within GFF3546at 52.664 kb on + strand, within GFF3546at 52.664 kb on + strand, within GFF3546at 52.664 kb on + strand, within GFF3546at 52.664 kb on + strand, within GFF3546at 52.664 kb on + strand, within GFF3546at 52.664 kb on + strand, within GFF3546at 52.665 kb on - strand, within GFF3546at 52.665 kb on - strand, within GFF3546

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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50,615 - GFF3545 0.66 -0.0
50,728 + GFF3545 0.71 +0.3
50,728 + GFF3545 0.71 +0.2
50,728 + GFF3545 0.71 +1.0
50,728 + GFF3545 0.71 -0.7
50,728 + GFF3545 0.71 +0.3
50,728 + GFF3545 0.71 -0.5
50,729 - GFF3545 0.71 -0.2
50,729 - GFF3545 0.71 -0.4
50,729 - GFF3545 0.71 +0.4
50,729 - GFF3545 0.71 +0.2
50,729 - GFF3545 0.71 +0.1
50,729 - GFF3545 0.71 -0.0
50,761 + GFF3545 0.72 -0.9
50,761 + GFF3545 0.72 -0.5
50,761 + GFF3545 0.72 -0.0
50,761 + GFF3545 0.72 +1.8
50,761 + GFF3545 0.72 +0.1
50,761 + GFF3545 0.72 -0.3
50,761 + GFF3545 0.72 +0.6
50,761 + GFF3545 0.72 +0.7
50,761 + GFF3545 0.72 -0.9
50,761 + GFF3545 0.72 -0.1
50,761 + GFF3545 0.72 -0.4
50,761 + GFF3545 0.72 +1.0
50,762 - GFF3545 0.72 -0.9
50,762 - GFF3545 0.72 -0.4
50,762 - GFF3545 0.72 -0.3
50,762 - GFF3545 0.72 -0.0
50,762 - GFF3545 0.72 -0.2
50,762 - GFF3545 0.72 +0.3
50,762 - GFF3545 0.72 +0.1
50,762 - GFF3545 0.72 -0.2
50,762 - GFF3545 0.72 -0.5
50,762 - GFF3545 0.72 +2.0
50,762 - GFF3545 0.72 +1.0
50,857 + GFF3545 0.76 -0.3
50,857 + GFF3545 0.76 -1.0
50,857 + GFF3545 0.76 +0.6
50,857 + GFF3545 0.76 -0.6
50,857 + GFF3545 0.76 -0.3
50,858 - GFF3545 0.76 -0.5
50,858 - GFF3545 0.76 +0.1
50,941 + GFF3545 0.80 -0.6
50,942 - GFF3545 0.80 -1.7
50,942 - GFF3545 0.80 +1.4
50,942 - GFF3545 0.80 -0.2
50,942 - GFF3545 0.80 -0.9
50,942 - GFF3545 0.80 +0.1
50,948 - GFF3545 0.80 +0.4
51,136 + GFF3545 0.88 +0.4
51,136 + GFF3545 0.88 -0.5
51,136 + GFF3545 0.88 -0.2
51,464 + -0.8
51,464 + +0.2
51,464 + -0.4
51,465 - -0.5
51,465 - -0.9
51,465 - -0.6
51,482 + -0.0
51,482 + -0.1
51,482 + -1.6
51,482 + -0.2
51,482 + -0.5
51,482 + -0.9
51,482 + -0.8
51,482 + -0.9
51,482 + +0.4
51,483 - -1.3
51,483 - -0.6
51,483 - +0.4
51,483 - -1.4
51,483 - +1.2
51,483 - -1.1
51,483 - +0.8
51,483 - +0.6
51,568 + GFF3547 0.18 -1.0
51,568 + GFF3547 0.18 -0.9
51,568 + GFF3547 0.18 -1.3
51,568 + GFF3547 0.18 -0.2
51,568 + GFF3547 0.18 +0.2
51,569 - GFF3547 0.19 -1.2
51,673 + -0.4
51,674 - -0.0
51,703 + -0.2
51,704 - -0.5
51,704 - -0.6
51,726 - +0.5
51,765 - -0.5
51,776 + +1.0
51,860 + +0.1
51,860 + +1.0
51,860 + -1.2
51,860 + -0.4
51,861 - -0.5
51,861 - -0.3
51,861 - -0.0
51,861 - +0.0
51,861 - +0.1
51,861 - -2.0
51,861 - +0.5
51,998 + GFF3546 0.15 -1.0
52,073 + GFF3546 0.19 -1.0
52,073 + GFF3546 0.19 +0.5
52,073 + GFF3546 0.19 -0.5
52,073 + GFF3546 0.19 -0.1
52,073 + GFF3546 0.19 -0.5
52,073 + GFF3546 0.19 -0.5
52,074 - GFF3546 0.19 -0.3
52,074 - GFF3546 0.19 -0.3
52,074 - GFF3546 0.19 -0.4
52,074 - GFF3546 0.19 -0.5
52,074 - GFF3546 0.19 +0.2
52,074 - GFF3546 0.19 -0.4
52,250 + GFF3546 0.28 +0.2
52,250 + GFF3546 0.28 -0.6
52,250 + GFF3546 0.28 -0.6
52,250 + GFF3546 0.28 -0.3
52,250 + GFF3546 0.28 -1.2
52,251 - GFF3546 0.28 -0.6
52,251 - GFF3546 0.28 -0.3
52,251 - GFF3546 0.28 -0.2
52,289 + GFF3546 0.30 -0.2
52,289 + GFF3546 0.30 -0.5
52,289 + GFF3546 0.30 -0.0
52,289 + GFF3546 0.30 -0.7
52,290 - GFF3546 0.30 -0.3
52,290 - GFF3546 0.30 -1.0
52,290 - GFF3546 0.30 -1.6
52,290 - GFF3546 0.30 -0.3
52,290 - GFF3546 0.30 +0.1
52,290 - GFF3546 0.30 -1.6
52,451 + GFF3546 0.38 +1.4
52,451 + GFF3546 0.38 -0.4
52,451 + GFF3546 0.38 -1.9
52,451 + GFF3546 0.38 -0.5
52,452 - GFF3546 0.38 +1.3
52,452 - GFF3546 0.38 -0.4
52,463 + GFF3546 0.38 -0.0
52,463 + GFF3546 0.38 -0.6
52,463 + GFF3546 0.38 +0.3
52,463 + GFF3546 0.38 -0.0
52,464 - GFF3546 0.38 -0.4
52,464 - GFF3546 0.38 +0.2
52,464 - GFF3546 0.38 -0.7
52,464 - GFF3546 0.38 +1.6
52,464 - GFF3546 0.38 -0.9
52,464 - GFF3546 0.38 +0.3
52,464 - GFF3546 0.38 +0.1
52,464 - GFF3546 0.38 -0.1
52,464 - GFF3546 0.38 -0.2
52,464 - GFF3546 0.38 -1.1
52,484 + GFF3546 0.39 -1.1
52,484 + GFF3546 0.39 -0.9
52,484 + GFF3546 0.39 +0.3
52,484 + GFF3546 0.39 -0.9
52,485 - GFF3546 0.39 -1.3
52,485 - GFF3546 0.39 -0.9
52,485 - GFF3546 0.39 +0.3
52,485 - GFF3546 0.39 -0.3
52,535 + GFF3546 0.42 -0.6
52,535 + GFF3546 0.42 -1.4
52,535 + GFF3546 0.42 -0.8
52,536 - GFF3546 0.42 -0.4
52,536 - GFF3546 0.42 -1.6
52,536 - GFF3546 0.42 -0.6
52,536 - GFF3546 0.42 -0.3
52,536 - GFF3546 0.42 -1.0
52,550 + GFF3546 0.42 -1.9
52,550 + GFF3546 0.42 -1.8
52,550 + GFF3546 0.42 -0.6
52,550 + GFF3546 0.42 -0.6
52,550 + GFF3546 0.42 -0.1
52,550 + GFF3546 0.42 -0.7
52,550 + GFF3546 0.42 +0.0
52,550 + GFF3546 0.42 -2.2
52,550 + GFF3546 0.42 -0.9
52,550 + GFF3546 0.42 -0.6
52,550 + GFF3546 0.42 -1.2
52,550 + GFF3546 0.42 -1.2
52,550 + GFF3546 0.42 -0.7
52,550 + GFF3546 0.42 +1.0
52,550 + GFF3546 0.42 -1.0
52,550 + GFF3546 0.42 -0.2
52,550 + GFF3546 0.42 -0.5
52,550 + GFF3546 0.42 -0.7
52,550 + GFF3546 0.42 -0.0
52,550 + GFF3546 0.42 +1.1
52,550 + GFF3546 0.42 +1.6
52,551 - GFF3546 0.42 -1.1
52,551 - GFF3546 0.42 +1.0
52,551 - GFF3546 0.42 -1.2
52,551 - GFF3546 0.42 +0.5
52,551 - GFF3546 0.42 -1.8
52,551 - GFF3546 0.42 -0.4
52,551 - GFF3546 0.42 -0.3
52,551 - GFF3546 0.42 -0.9
52,551 - GFF3546 0.42 -3.1
52,551 - GFF3546 0.42 -2.4
52,551 - GFF3546 0.42 -1.3
52,551 - GFF3546 0.42 -0.2
52,551 - GFF3546 0.42 -0.4
52,551 - GFF3546 0.42 -0.5
52,613 + GFF3546 0.46 -0.5
52,613 + GFF3546 0.46 -0.8
52,613 + GFF3546 0.46 -1.2
52,613 + GFF3546 0.46 -1.9
52,613 + GFF3546 0.46 -0.5
52,614 - GFF3546 0.46 +0.4
52,614 - GFF3546 0.46 +1.4
52,614 - GFF3546 0.46 +0.1
52,614 - GFF3546 0.46 -0.5
52,614 - GFF3546 0.46 +0.4
52,664 + GFF3546 0.48 +0.3
52,664 + GFF3546 0.48 +1.0
52,664 + GFF3546 0.48 -0.0
52,664 + GFF3546 0.48 -0.0
52,664 + GFF3546 0.48 -1.4
52,664 + GFF3546 0.48 -1.3
52,665 - GFF3546 0.48 -1.3
52,665 - GFF3546 0.48 +1.1

Or see this region's nucleotide sequence