Strain Fitness in Variovorax sp. SCN45 around GFF3544

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3542 and GFF3543 are separated by 5 nucleotidesGFF3543 and GFF3544 overlap by 8 nucleotidesGFF3544 and GFF3545 are separated by 43 nucleotides GFF3542 - hypothetical protein, at 47,339 to 47,851 GFF3542 GFF3543 - no description, at 47,857 to 48,453 GFF3543 GFF3544 - no description, at 48,446 to 49,057 GFF3544 GFF3545 - hypothetical protein, at 49,101 to 51,404 GFF3545 Position (kb) 48 49 50Strain fitness (log2 ratio) -2 -1 0 1 2 3at 47.592 kb on + strand, within GFF3542at 47.592 kb on + strand, within GFF3542at 47.592 kb on + strand, within GFF3542at 47.592 kb on + strand, within GFF3542at 47.592 kb on + strand, within GFF3542at 47.592 kb on + strand, within GFF3542at 47.592 kb on + strand, within GFF3542at 47.592 kb on + strand, within GFF3542at 47.592 kb on + strand, within GFF3542at 47.592 kb on + strand, within GFF3542at 47.592 kb on + strand, within GFF3542at 47.592 kb on + strand, within GFF3542at 47.592 kb on + strand, within GFF3542at 47.593 kb on - strand, within GFF3542at 47.593 kb on - strand, within GFF3542at 47.593 kb on - strand, within GFF3542at 47.593 kb on - strand, within GFF3542at 47.593 kb on - strand, within GFF3542at 47.593 kb on - strand, within GFF3542at 47.595 kb on + strand, within GFF3542at 47.595 kb on + strand, within GFF3542at 47.595 kb on + strand, within GFF3542at 47.595 kb on + strand, within GFF3542at 47.595 kb on + strand, within GFF3542at 47.595 kb on + strand, within GFF3542at 47.595 kb on + strand, within GFF3542at 47.595 kb on + strand, within GFF3542at 47.595 kb on + strand, within GFF3542at 47.596 kb on - strand, within GFF3542at 47.596 kb on - strand, within GFF3542at 47.596 kb on - strand, within GFF3542at 47.596 kb on - strand, within GFF3542at 47.596 kb on - strand, within GFF3542at 47.596 kb on - strand, within GFF3542at 47.596 kb on - strand, within GFF3542at 47.596 kb on - strand, within GFF3542at 47.596 kb on - strand, within GFF3542at 47.619 kb on + strand, within GFF3542at 47.619 kb on + strand, within GFF3542at 47.619 kb on + strand, within GFF3542at 47.619 kb on + strand, within GFF3542at 47.619 kb on + strand, within GFF3542at 47.620 kb on - strand, within GFF3542at 47.620 kb on - strand, within GFF3542at 47.620 kb on - strand, within GFF3542at 47.894 kb on + strandat 47.894 kb on + strandat 47.894 kb on + strandat 47.894 kb on + strandat 47.895 kb on - strandat 47.895 kb on - strandat 47.909 kb on + strandat 47.909 kb on + strandat 47.910 kb on - strandat 47.927 kb on + strand, within GFF3543at 47.927 kb on + strand, within GFF3543at 47.928 kb on - strand, within GFF3543at 47.928 kb on - strand, within GFF3543at 47.928 kb on - strand, within GFF3543at 48.049 kb on + strand, within GFF3543at 48.049 kb on + strand, within GFF3543at 48.049 kb on + strand, within GFF3543at 48.049 kb on + strand, within GFF3543at 48.049 kb on + strand, within GFF3543at 48.049 kb on + strand, within GFF3543at 48.049 kb on + strand, within GFF3543at 48.049 kb on + strand, within GFF3543at 48.050 kb on - strand, within GFF3543at 48.050 kb on - strand, within GFF3543at 48.050 kb on - strand, within GFF3543at 48.050 kb on - strand, within GFF3543at 48.050 kb on - strand, within GFF3543at 48.050 kb on - strand, within GFF3543at 48.050 kb on - strand, within GFF3543at 48.050 kb on - strand, within GFF3543at 48.050 kb on - strand, within GFF3543at 48.050 kb on - strand, within GFF3543at 48.331 kb on + strand, within GFF3543at 48.331 kb on + strand, within GFF3543at 48.331 kb on + strand, within GFF3543at 48.331 kb on + strand, within GFF3543at 48.332 kb on - strand, within GFF3543at 48.332 kb on - strand, within GFF3543at 48.332 kb on - strand, within GFF3543at 48.350 kb on + strand, within GFF3543at 48.374 kb on + strand, within GFF3543at 48.374 kb on + strand, within GFF3543at 48.374 kb on + strand, within GFF3543at 48.374 kb on + strand, within GFF3543at 48.375 kb on - strand, within GFF3543at 48.375 kb on - strand, within GFF3543at 48.375 kb on - strand, within GFF3543at 48.375 kb on - strand, within GFF3543at 48.465 kb on + strandat 48.465 kb on + strandat 48.465 kb on + strandat 48.465 kb on + strandat 48.465 kb on + strandat 48.465 kb on + strandat 48.465 kb on + strandat 48.466 kb on - strandat 48.466 kb on - strandat 48.466 kb on - strandat 48.466 kb on - strandat 48.483 kb on + strandat 48.483 kb on + strandat 48.483 kb on + strandat 48.483 kb on + strandat 48.483 kb on + strandat 48.483 kb on + strandat 48.484 kb on - strandat 48.484 kb on - strandat 48.484 kb on - strandat 48.687 kb on + strand, within GFF3544at 48.687 kb on + strand, within GFF3544at 48.687 kb on + strand, within GFF3544at 48.687 kb on + strand, within GFF3544at 48.687 kb on + strand, within GFF3544at 48.687 kb on + strand, within GFF3544at 48.688 kb on - strand, within GFF3544at 48.688 kb on - strand, within GFF3544at 48.966 kb on + strand, within GFF3544at 48.966 kb on + strand, within GFF3544at 48.972 kb on + strand, within GFF3544at 48.972 kb on + strand, within GFF3544at 48.973 kb on - strand, within GFF3544at 49.074 kb on + strandat 49.369 kb on + strand, within GFF3545at 49.369 kb on + strand, within GFF3545at 49.369 kb on + strand, within GFF3545at 49.370 kb on - strand, within GFF3545at 49.432 kb on + strand, within GFF3545at 49.432 kb on + strand, within GFF3545at 49.433 kb on - strand, within GFF3545at 49.465 kb on + strand, within GFF3545at 49.465 kb on + strand, within GFF3545at 49.465 kb on + strand, within GFF3545at 49.466 kb on - strand, within GFF3545at 49.466 kb on - strand, within GFF3545at 49.466 kb on - strand, within GFF3545at 49.471 kb on + strand, within GFF3545at 49.471 kb on + strand, within GFF3545at 49.471 kb on + strand, within GFF3545at 49.471 kb on + strand, within GFF3545at 49.471 kb on + strand, within GFF3545at 49.471 kb on + strand, within GFF3545at 49.471 kb on + strand, within GFF3545at 49.471 kb on + strand, within GFF3545at 49.471 kb on + strand, within GFF3545at 49.471 kb on + strand, within GFF3545at 49.471 kb on + strand, within GFF3545at 49.471 kb on + strand, within GFF3545at 49.471 kb on + strand, within GFF3545at 49.471 kb on + strand, within GFF3545at 49.471 kb on + strand, within GFF3545at 49.471 kb on + strand, within GFF3545at 49.471 kb on + strand, within GFF3545at 49.471 kb on + strand, within GFF3545at 49.471 kb on + strand, within GFF3545at 49.471 kb on + strand, within GFF3545at 49.471 kb on + strand, within GFF3545at 49.472 kb on - strand, within GFF3545at 49.472 kb on - strand, within GFF3545at 49.472 kb on - strand, within GFF3545at 49.472 kb on - strand, within GFF3545at 49.472 kb on - strand, within GFF3545at 49.472 kb on - strand, within GFF3545at 49.472 kb on - strand, within GFF3545at 49.472 kb on - strand, within GFF3545at 49.472 kb on - strand, within GFF3545at 49.472 kb on - strand, within GFF3545at 49.472 kb on - strand, within GFF3545at 49.472 kb on - strand, within GFF3545at 49.472 kb on - strand, within GFF3545at 49.472 kb on - strand, within GFF3545at 49.472 kb on - strand, within GFF3545at 49.472 kb on - strand, within GFF3545at 49.472 kb on - strand, within GFF3545at 49.630 kb on + strand, within GFF3545at 49.630 kb on + strand, within GFF3545at 49.630 kb on + strand, within GFF3545at 49.630 kb on + strand, within GFF3545at 49.630 kb on + strand, within GFF3545at 49.630 kb on + strand, within GFF3545at 49.631 kb on - strand, within GFF3545at 49.631 kb on - strand, within GFF3545at 49.654 kb on + strand, within GFF3545at 49.654 kb on + strand, within GFF3545at 49.654 kb on + strand, within GFF3545at 49.654 kb on + strand, within GFF3545at 49.655 kb on - strand, within GFF3545at 49.655 kb on - strand, within GFF3545at 49.655 kb on - strand, within GFF3545at 49.655 kb on - strand, within GFF3545at 49.655 kb on - strand, within GFF3545at 49.655 kb on - strand, within GFF3545at 49.655 kb on - strand, within GFF3545at 49.723 kb on + strand, within GFF3545at 49.724 kb on - strand, within GFF3545at 49.724 kb on - strand, within GFF3545at 49.760 kb on - strand, within GFF3545at 49.933 kb on + strand, within GFF3545at 49.933 kb on + strand, within GFF3545at 49.933 kb on + strand, within GFF3545at 49.933 kb on + strand, within GFF3545at 49.933 kb on + strand, within GFF3545at 49.933 kb on + strand, within GFF3545at 49.933 kb on + strand, within GFF3545at 49.933 kb on + strand, within GFF3545at 49.934 kb on - strand, within GFF3545at 49.934 kb on - strand, within GFF3545at 49.934 kb on - strand, within GFF3545at 49.934 kb on - strand, within GFF3545at 49.948 kb on + strand, within GFF3545at 49.949 kb on - strand, within GFF3545

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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47,592 + GFF3542 0.49 -0.2
47,592 + GFF3542 0.49 -0.6
47,592 + GFF3542 0.49 +0.0
47,592 + GFF3542 0.49 -0.0
47,592 + GFF3542 0.49 -0.4
47,592 + GFF3542 0.49 -1.0
47,592 + GFF3542 0.49 +0.2
47,592 + GFF3542 0.49 -0.5
47,592 + GFF3542 0.49 -0.1
47,592 + GFF3542 0.49 +1.0
47,592 + GFF3542 0.49 -0.7
47,592 + GFF3542 0.49 -0.3
47,592 + GFF3542 0.49 -0.1
47,593 - GFF3542 0.50 +0.5
47,593 - GFF3542 0.50 -0.2
47,593 - GFF3542 0.50 -0.0
47,593 - GFF3542 0.50 -0.0
47,593 - GFF3542 0.50 -0.4
47,593 - GFF3542 0.50 +0.7
47,595 + GFF3542 0.50 -0.3
47,595 + GFF3542 0.50 -1.0
47,595 + GFF3542 0.50 -0.4
47,595 + GFF3542 0.50 -0.0
47,595 + GFF3542 0.50 -1.2
47,595 + GFF3542 0.50 -0.9
47,595 + GFF3542 0.50 +0.4
47,595 + GFF3542 0.50 +1.8
47,595 + GFF3542 0.50 +0.1
47,596 - GFF3542 0.50 -0.2
47,596 - GFF3542 0.50 -0.2
47,596 - GFF3542 0.50 +0.5
47,596 - GFF3542 0.50 -0.1
47,596 - GFF3542 0.50 -0.0
47,596 - GFF3542 0.50 -0.3
47,596 - GFF3542 0.50 +0.8
47,596 - GFF3542 0.50 +0.6
47,596 - GFF3542 0.50 -0.8
47,619 + GFF3542 0.55 -0.3
47,619 + GFF3542 0.55 +0.4
47,619 + GFF3542 0.55 -0.1
47,619 + GFF3542 0.55 -0.5
47,619 + GFF3542 0.55 +1.0
47,620 - GFF3542 0.55 -1.1
47,620 - GFF3542 0.55 +2.0
47,620 - GFF3542 0.55 -1.5
47,894 + +0.6
47,894 + -0.1
47,894 + -0.1
47,894 + -0.5
47,895 - -1.9
47,895 - +0.7
47,909 + -1.1
47,909 + +0.3
47,910 - -2.1
47,927 + GFF3543 0.12 -0.5
47,927 + GFF3543 0.12 -0.4
47,928 - GFF3543 0.12 -0.6
47,928 - GFF3543 0.12 -1.7
47,928 - GFF3543 0.12 -1.0
48,049 + GFF3543 0.32 +1.0
48,049 + GFF3543 0.32 -0.6
48,049 + GFF3543 0.32 -0.3
48,049 + GFF3543 0.32 -0.0
48,049 + GFF3543 0.32 -1.3
48,049 + GFF3543 0.32 +0.5
48,049 + GFF3543 0.32 -1.0
48,049 + GFF3543 0.32 +1.7
48,050 - GFF3543 0.32 +0.6
48,050 - GFF3543 0.32 -0.4
48,050 - GFF3543 0.32 +0.6
48,050 - GFF3543 0.32 -0.4
48,050 - GFF3543 0.32 +0.1
48,050 - GFF3543 0.32 +0.5
48,050 - GFF3543 0.32 -0.1
48,050 - GFF3543 0.32 +0.2
48,050 - GFF3543 0.32 +3.7
48,050 - GFF3543 0.32 +0.1
48,331 + GFF3543 0.79 -2.0
48,331 + GFF3543 0.79 -0.6
48,331 + GFF3543 0.79 +0.2
48,331 + GFF3543 0.79 -0.1
48,332 - GFF3543 0.80 -0.1
48,332 - GFF3543 0.80 -0.6
48,332 - GFF3543 0.80 +1.2
48,350 + GFF3543 0.83 +0.5
48,374 + GFF3543 0.87 +0.1
48,374 + GFF3543 0.87 -0.9
48,374 + GFF3543 0.87 -0.3
48,374 + GFF3543 0.87 -1.1
48,375 - GFF3543 0.87 +0.1
48,375 - GFF3543 0.87 -0.4
48,375 - GFF3543 0.87 +0.4
48,375 - GFF3543 0.87 +2.4
48,465 + -1.0
48,465 + -0.8
48,465 + -0.5
48,465 + -0.1
48,465 + -0.6
48,465 + -2.1
48,465 + +0.8
48,466 - -0.3
48,466 - -0.3
48,466 - +0.5
48,466 - -0.9
48,483 + -0.4
48,483 + -0.4
48,483 + -1.1
48,483 + -0.5
48,483 + +0.0
48,483 + -0.6
48,484 - -0.2
48,484 - -0.1
48,484 - -0.0
48,687 + GFF3544 0.39 +0.0
48,687 + GFF3544 0.39 -0.9
48,687 + GFF3544 0.39 -0.6
48,687 + GFF3544 0.39 -1.0
48,687 + GFF3544 0.39 -0.0
48,687 + GFF3544 0.39 +0.1
48,688 - GFF3544 0.40 -0.5
48,688 - GFF3544 0.40 -0.4
48,966 + GFF3544 0.85 -0.3
48,966 + GFF3544 0.85 -0.9
48,972 + GFF3544 0.86 -0.6
48,972 + GFF3544 0.86 -0.4
48,973 - GFF3544 0.86 -0.5
49,074 + +0.7
49,369 + GFF3545 0.12 +1.1
49,369 + GFF3545 0.12 +0.4
49,369 + GFF3545 0.12 +0.4
49,370 - GFF3545 0.12 +0.4
49,432 + GFF3545 0.14 -0.4
49,432 + GFF3545 0.14 -2.4
49,433 - GFF3545 0.14 +0.4
49,465 + GFF3545 0.16 -0.3
49,465 + GFF3545 0.16 -0.5
49,465 + GFF3545 0.16 -0.7
49,466 - GFF3545 0.16 -0.3
49,466 - GFF3545 0.16 -1.2
49,466 - GFF3545 0.16 -0.4
49,471 + GFF3545 0.16 -0.1
49,471 + GFF3545 0.16 +0.5
49,471 + GFF3545 0.16 -0.3
49,471 + GFF3545 0.16 +0.3
49,471 + GFF3545 0.16 -0.2
49,471 + GFF3545 0.16 -0.6
49,471 + GFF3545 0.16 -0.5
49,471 + GFF3545 0.16 -0.9
49,471 + GFF3545 0.16 -0.1
49,471 + GFF3545 0.16 -0.6
49,471 + GFF3545 0.16 -0.4
49,471 + GFF3545 0.16 +0.2
49,471 + GFF3545 0.16 +1.0
49,471 + GFF3545 0.16 -0.1
49,471 + GFF3545 0.16 -0.6
49,471 + GFF3545 0.16 +2.5
49,471 + GFF3545 0.16 +0.7
49,471 + GFF3545 0.16 +0.2
49,471 + GFF3545 0.16 -1.0
49,471 + GFF3545 0.16 +0.2
49,471 + GFF3545 0.16 -0.4
49,472 - GFF3545 0.16 -0.6
49,472 - GFF3545 0.16 +0.1
49,472 - GFF3545 0.16 -0.2
49,472 - GFF3545 0.16 -0.0
49,472 - GFF3545 0.16 -0.0
49,472 - GFF3545 0.16 -1.3
49,472 - GFF3545 0.16 +0.2
49,472 - GFF3545 0.16 -1.0
49,472 - GFF3545 0.16 -0.7
49,472 - GFF3545 0.16 -1.9
49,472 - GFF3545 0.16 +0.1
49,472 - GFF3545 0.16 +1.4
49,472 - GFF3545 0.16 -0.1
49,472 - GFF3545 0.16 -0.1
49,472 - GFF3545 0.16 -0.2
49,472 - GFF3545 0.16 +0.2
49,472 - GFF3545 0.16 +1.0
49,630 + GFF3545 0.23 -0.3
49,630 + GFF3545 0.23 -0.2
49,630 + GFF3545 0.23 +0.1
49,630 + GFF3545 0.23 +0.2
49,630 + GFF3545 0.23 -0.1
49,630 + GFF3545 0.23 -0.3
49,631 - GFF3545 0.23 -0.3
49,631 - GFF3545 0.23 +1.1
49,654 + GFF3545 0.24 -0.0
49,654 + GFF3545 0.24 -0.5
49,654 + GFF3545 0.24 +0.2
49,654 + GFF3545 0.24 -0.5
49,655 - GFF3545 0.24 -0.4
49,655 - GFF3545 0.24 +0.1
49,655 - GFF3545 0.24 -0.1
49,655 - GFF3545 0.24 -0.5
49,655 - GFF3545 0.24 -0.2
49,655 - GFF3545 0.24 -0.7
49,655 - GFF3545 0.24 -0.7
49,723 + GFF3545 0.27 -0.1
49,724 - GFF3545 0.27 -0.8
49,724 - GFF3545 0.27 +1.4
49,760 - GFF3545 0.29 +0.8
49,933 + GFF3545 0.36 +0.4
49,933 + GFF3545 0.36 -0.9
49,933 + GFF3545 0.36 -0.7
49,933 + GFF3545 0.36 -0.9
49,933 + GFF3545 0.36 -0.7
49,933 + GFF3545 0.36 +0.1
49,933 + GFF3545 0.36 +0.0
49,933 + GFF3545 0.36 -0.5
49,934 - GFF3545 0.36 +0.1
49,934 - GFF3545 0.36 +0.9
49,934 - GFF3545 0.36 -0.4
49,934 - GFF3545 0.36 +0.7
49,948 + GFF3545 0.37 -1.6
49,949 - GFF3545 0.37 -0.6

Or see this region's nucleotide sequence