Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3529 and GFF3530 are separated by 83 nucleotides GFF3530 and GFF3531 overlap by 34 nucleotides GFF3531 and GFF3532 are separated by 142 nucleotides GFF3532 and GFF3533 are separated by 67 nucleotides
GFF3529 - Nicotinamide-nucleotide adenylyltransferase, NadM family (EC 2.7.7.1) / ADP-ribose pyrophosphatase (EC 3.6.1.13), at 35,334 to 36,413
GFF3529
GFF3530 - Pseudouridine synthase, at 36,497 to 37,330
GFF3530
GFF3531 - hypothetical protein, at 37,297 to 38,418
GFF3531
GFF3532 - Two-component system response regulator QseB, at 38,561 to 39,217
GFF3532
GFF3533 - Two-component system sensor histidine kinase, at 39,285 to 40,685
GFF3533
Position (kb) 37
38
39 Strain fitness (log2 ratio) -2
-1
0
1 at 36.382 kb on + strand at 36.382 kb on + strand at 36.383 kb on - strand at 36.383 kb on - strand at 36.383 kb on - strand at 36.388 kb on + strand at 36.388 kb on + strand at 36.389 kb on - strand at 36.389 kb on - strand at 36.464 kb on - strand at 36.965 kb on + strand, within GFF3530 at 36.965 kb on + strand, within GFF3530 at 36.965 kb on + strand, within GFF3530 at 36.966 kb on - strand, within GFF3530 at 36.966 kb on - strand, within GFF3530 at 36.983 kb on + strand, within GFF3530 at 36.983 kb on + strand, within GFF3530 at 36.984 kb on - strand, within GFF3530 at 37.453 kb on + strand, within GFF3531 at 37.453 kb on + strand, within GFF3531 at 37.453 kb on + strand, within GFF3531 at 37.453 kb on + strand, within GFF3531 at 37.454 kb on - strand, within GFF3531 at 37.931 kb on - strand, within GFF3531 at 37.931 kb on - strand, within GFF3531 at 38.463 kb on - strand at 38.473 kb on + strand at 38.473 kb on + strand at 38.474 kb on - strand at 38.477 kb on + strand at 38.477 kb on + strand at 38.477 kb on + strand at 38.477 kb on + strand at 38.477 kb on + strand at 38.478 kb on - strand at 38.478 kb on - strand at 38.487 kb on + strand at 38.487 kb on + strand at 38.487 kb on + strand at 38.487 kb on + strand at 38.488 kb on - strand at 38.488 kb on - strand at 38.488 kb on - strand at 38.488 kb on - strand at 38.488 kb on - strand at 38.534 kb on + strand at 38.534 kb on + strand at 38.534 kb on + strand at 38.534 kb on + strand at 38.535 kb on - strand at 38.535 kb on - strand at 38.535 kb on - strand at 38.535 kb on - strand at 38.535 kb on - strand at 38.693 kb on + strand, within GFF3532 at 38.694 kb on - strand, within GFF3532 at 38.694 kb on - strand, within GFF3532 at 38.694 kb on - strand, within GFF3532 at 38.852 kb on + strand, within GFF3532 at 38.853 kb on - strand, within GFF3532 at 39.095 kb on + strand, within GFF3532 at 39.095 kb on + strand, within GFF3532 at 39.095 kb on + strand, within GFF3532 at 39.095 kb on + strand, within GFF3532 at 39.232 kb on - strand at 39.250 kb on - strand at 39.284 kb on + strand at 39.285 kb on - strand at 39.285 kb on - strand at 39.302 kb on + strand at 39.302 kb on + strand at 39.303 kb on - strand at 39.303 kb on - strand at 39.414 kb on + strand at 39.415 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 36,382 + -0.5 36,382 + -0.1 36,383 - +0.4 36,383 - -1.1 36,383 - -0.1 36,388 + -1.9 36,388 + +0.2 36,389 - -0.7 36,389 - +0.7 36,464 - +0.1 36,965 + GFF3530 0.56 -0.7 36,965 + GFF3530 0.56 -0.5 36,965 + GFF3530 0.56 +1.4 36,966 - GFF3530 0.56 -0.9 36,966 - GFF3530 0.56 +0.4 36,983 + GFF3530 0.58 -0.9 36,983 + GFF3530 0.58 -0.3 36,984 - GFF3530 0.58 +0.2 37,453 + GFF3531 0.14 -0.9 37,453 + GFF3531 0.14 -0.2 37,453 + GFF3531 0.14 -0.4 37,453 + GFF3531 0.14 -0.2 37,454 - GFF3531 0.14 -0.6 37,931 - GFF3531 0.57 -0.9 37,931 - GFF3531 0.57 +0.1 38,463 - -0.7 38,473 + -0.7 38,473 + +0.1 38,474 - +1.5 38,477 + -0.4 38,477 + -1.0 38,477 + -0.7 38,477 + -1.0 38,477 + -1.0 38,478 - +0.4 38,478 - -1.5 38,487 + +0.4 38,487 + -0.1 38,487 + +0.1 38,487 + -0.4 38,488 - +1.5 38,488 - +0.4 38,488 - +0.2 38,488 - -0.0 38,488 - +0.8 38,534 + +0.2 38,534 + +0.9 38,534 + +0.1 38,534 + +0.5 38,535 - -0.5 38,535 - -0.0 38,535 - -0.3 38,535 - +0.8 38,535 - +1.5 38,693 + GFF3532 0.20 -0.0 38,694 - GFF3532 0.20 -1.2 38,694 - GFF3532 0.20 +0.4 38,694 - GFF3532 0.20 -0.7 38,852 + GFF3532 0.44 -0.4 38,853 - GFF3532 0.44 +0.0 39,095 + GFF3532 0.81 +0.3 39,095 + GFF3532 0.81 +0.1 39,095 + GFF3532 0.81 -0.0 39,095 + GFF3532 0.81 -0.0 39,232 - +0.2 39,250 - -0.9 39,284 + -0.4 39,285 - +1.3 39,285 - -1.5 39,302 + -1.9 39,302 + -0.2 39,303 - -1.0 39,303 - +0.1 39,414 + +0.4 39,415 - +0.0
Or see this region's nucleotide sequence