Strain Fitness in Variovorax sp. SCN45 around GFF3526

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3524 and GFF3525 are separated by 86 nucleotidesGFF3525 and GFF3526 overlap by 4 nucleotidesGFF3526 and GFF3527 overlap by 4 nucleotides GFF3524 - Possible NADH oxidoreductase, at 30,358 to 31,494 GFF3524 GFF3525 - Protein tyrosine/serine phosphatase, at 31,581 to 32,117 GFF3525 GFF3526 - hypothetical protein, at 32,114 to 32,608 GFF3526 GFF3527 - UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase, at 32,605 to 33,750 GFF3527 Position (kb) 32 33Strain fitness (log2 ratio) -1 0 1 2at 31.115 kb on + strand, within GFF3524at 31.125 kb on - strand, within GFF3524at 31.125 kb on - strand, within GFF3524at 31.549 kb on - strandat 31.549 kb on - strandat 31.550 kb on + strandat 31.550 kb on + strandat 31.550 kb on + strandat 31.550 kb on + strandat 31.550 kb on + strandat 31.550 kb on + strandat 31.550 kb on + strandat 31.550 kb on + strandat 31.550 kb on + strandat 31.550 kb on + strandat 31.550 kb on + strandat 31.551 kb on - strandat 31.551 kb on - strandat 31.551 kb on - strandat 31.551 kb on - strandat 31.551 kb on - strandat 31.551 kb on - strandat 31.654 kb on + strand, within GFF3525at 31.684 kb on + strand, within GFF3525at 31.684 kb on + strand, within GFF3525at 31.753 kb on + strand, within GFF3525at 31.754 kb on - strand, within GFF3525at 31.754 kb on - strand, within GFF3525at 32.409 kb on + strand, within GFF3526at 32.410 kb on - strand, within GFF3526at 32.416 kb on - strand, within GFF3526at 32.563 kb on - strandat 32.733 kb on - strand, within GFF3527at 32.733 kb on - strand, within GFF3527at 32.733 kb on - strand, within GFF3527at 32.733 kb on - strand, within GFF3527at 32.990 kb on + strand, within GFF3527at 32.991 kb on - strand, within GFF3527at 32.991 kb on - strand, within GFF3527at 32.991 kb on - strand, within GFF3527at 33.329 kb on + strand, within GFF3527at 33.330 kb on - strand, within GFF3527at 33.545 kb on + strand, within GFF3527at 33.546 kb on - strand, within GFF3527at 33.546 kb on - strand, within GFF3527at 33.584 kb on + strand, within GFF3527at 33.584 kb on + strand, within GFF3527at 33.584 kb on + strand, within GFF3527at 33.585 kb on - strand, within GFF3527at 33.585 kb on - strand, within GFF3527at 33.585 kb on - strand, within GFF3527at 33.585 kb on - strand, within GFF3527at 33.585 kb on - strand, within GFF3527at 33.585 kb on - strand, within GFF3527at 33.585 kb on - strand, within GFF3527at 33.585 kb on - strand, within GFF3527at 33.585 kb on - strand, within GFF3527at 33.585 kb on - strand, within GFF3527at 33.596 kb on + strand, within GFF3527at 33.596 kb on + strand, within GFF3527

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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31,115 + GFF3524 0.67 -0.7
31,125 - GFF3524 0.67 -0.3
31,125 - GFF3524 0.67 -0.5
31,549 - -0.6
31,549 - +0.1
31,550 + +0.4
31,550 + -0.6
31,550 + -0.1
31,550 + +0.1
31,550 + -0.2
31,550 + -1.4
31,550 + -0.1
31,550 + -0.4
31,550 + -1.0
31,550 + +0.8
31,550 + -1.0
31,551 - -0.5
31,551 - -0.4
31,551 - -0.0
31,551 - -0.3
31,551 - -0.2
31,551 - -0.6
31,654 + GFF3525 0.14 -0.7
31,684 + GFF3525 0.19 +0.2
31,684 + GFF3525 0.19 -1.1
31,753 + GFF3525 0.32 +0.2
31,754 - GFF3525 0.32 -0.6
31,754 - GFF3525 0.32 -0.3
32,409 + GFF3526 0.60 -0.4
32,410 - GFF3526 0.60 -1.1
32,416 - GFF3526 0.61 -0.6
32,563 - -1.5
32,733 - GFF3527 0.11 -0.6
32,733 - GFF3527 0.11 -0.4
32,733 - GFF3527 0.11 +0.7
32,733 - GFF3527 0.11 -0.3
32,990 + GFF3527 0.34 +0.1
32,991 - GFF3527 0.34 +1.1
32,991 - GFF3527 0.34 -0.2
32,991 - GFF3527 0.34 -0.0
33,329 + GFF3527 0.63 +0.4
33,330 - GFF3527 0.63 +0.1
33,545 + GFF3527 0.82 -0.5
33,546 - GFF3527 0.82 +1.0
33,546 - GFF3527 0.82 -0.6
33,584 + GFF3527 0.85 -0.0
33,584 + GFF3527 0.85 -0.5
33,584 + GFF3527 0.85 -0.8
33,585 - GFF3527 0.86 -0.8
33,585 - GFF3527 0.86 +1.0
33,585 - GFF3527 0.86 +0.1
33,585 - GFF3527 0.86 +0.0
33,585 - GFF3527 0.86 +0.4
33,585 - GFF3527 0.86 +0.5
33,585 - GFF3527 0.86 +0.4
33,585 - GFF3527 0.86 -0.2
33,585 - GFF3527 0.86 -0.7
33,585 - GFF3527 0.86 +2.5
33,596 + GFF3527 0.86 +0.6
33,596 + GFF3527 0.86 +0.3

Or see this region's nucleotide sequence