Strain Fitness in Variovorax sp. SCN45 around GFF3504

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3503 and GFF3504 are separated by 60 nucleotidesGFF3504 and GFF3505 are separated by 201 nucleotidesGFF3505 and GFF3506 are separated by 19 nucleotides GFF3503 - Subclass B3 beta-lactamase (EC 3.5.2.6), at 7,188 to 8,198 GFF3503 GFF3504 - BUG/TctC family periplasmic protein, at 8,259 to 9,248 GFF3504 GFF3505 - hypothetical protein, at 9,450 to 9,827 GFF3505 GFF3506 - Superoxide dismutase [Fe] (EC 1.15.1.1), at 9,847 to 10,428 GFF3506 Position (kb) 8 9 10Strain fitness (log2 ratio) -2 -1 0 1 2 3at 7.417 kb on + strand, within GFF3503at 7.417 kb on + strand, within GFF3503at 7.417 kb on + strand, within GFF3503at 7.417 kb on + strand, within GFF3503at 7.417 kb on + strand, within GFF3503at 7.417 kb on + strand, within GFF3503at 7.417 kb on + strand, within GFF3503at 7.417 kb on + strand, within GFF3503at 7.417 kb on + strand, within GFF3503at 7.417 kb on + strand, within GFF3503at 7.418 kb on - strand, within GFF3503at 7.418 kb on - strand, within GFF3503at 7.418 kb on - strand, within GFF3503at 7.418 kb on - strand, within GFF3503at 7.418 kb on - strand, within GFF3503at 7.418 kb on - strand, within GFF3503at 7.418 kb on - strand, within GFF3503at 7.418 kb on - strand, within GFF3503at 7.418 kb on - strand, within GFF3503at 7.418 kb on - strand, within GFF3503at 7.418 kb on - strand, within GFF3503at 7.418 kb on - strand, within GFF3503at 7.552 kb on + strand, within GFF3503at 7.552 kb on + strand, within GFF3503at 7.553 kb on - strand, within GFF3503at 7.553 kb on - strand, within GFF3503at 7.553 kb on - strand, within GFF3503at 7.553 kb on - strand, within GFF3503at 7.553 kb on - strand, within GFF3503at 7.604 kb on - strand, within GFF3503at 7.705 kb on + strand, within GFF3503at 7.706 kb on - strand, within GFF3503at 7.720 kb on + strand, within GFF3503at 7.721 kb on - strand, within GFF3503at 7.736 kb on - strand, within GFF3503at 7.736 kb on - strand, within GFF3503at 7.736 kb on - strand, within GFF3503at 7.768 kb on + strand, within GFF3503at 7.768 kb on + strand, within GFF3503at 7.768 kb on + strand, within GFF3503at 7.768 kb on + strand, within GFF3503at 7.769 kb on - strand, within GFF3503at 7.769 kb on - strand, within GFF3503at 7.769 kb on - strand, within GFF3503at 7.918 kb on + strand, within GFF3503at 7.918 kb on + strand, within GFF3503at 7.919 kb on - strand, within GFF3503at 7.919 kb on - strand, within GFF3503at 7.919 kb on - strand, within GFF3503at 8.151 kb on + strandat 8.151 kb on + strandat 8.151 kb on + strandat 8.151 kb on + strandat 8.151 kb on + strandat 8.152 kb on - strandat 8.260 kb on + strandat 8.260 kb on + strandat 8.260 kb on + strandat 8.261 kb on - strandat 8.261 kb on - strandat 8.308 kb on + strandat 8.308 kb on + strandat 8.309 kb on - strandat 8.309 kb on - strandat 8.477 kb on - strand, within GFF3504at 8.503 kb on + strand, within GFF3504at 8.504 kb on - strand, within GFF3504at 8.680 kb on + strand, within GFF3504at 8.680 kb on + strand, within GFF3504at 8.681 kb on - strand, within GFF3504at 8.681 kb on - strand, within GFF3504at 8.681 kb on - strand, within GFF3504at 8.681 kb on - strand, within GFF3504at 8.681 kb on - strand, within GFF3504at 8.768 kb on - strand, within GFF3504at 8.768 kb on - strand, within GFF3504at 8.768 kb on - strand, within GFF3504at 8.863 kb on + strand, within GFF3504at 8.863 kb on + strand, within GFF3504at 8.905 kb on + strand, within GFF3504at 8.905 kb on + strand, within GFF3504at 8.905 kb on + strand, within GFF3504at 8.905 kb on + strand, within GFF3504at 8.905 kb on + strand, within GFF3504at 8.905 kb on + strand, within GFF3504at 8.906 kb on - strand, within GFF3504at 8.906 kb on - strand, within GFF3504at 8.906 kb on - strand, within GFF3504at 8.906 kb on - strand, within GFF3504at 8.906 kb on - strand, within GFF3504at 8.920 kb on + strand, within GFF3504at 8.920 kb on + strand, within GFF3504at 8.921 kb on - strand, within GFF3504at 8.921 kb on - strand, within GFF3504at 8.971 kb on + strand, within GFF3504at 8.971 kb on + strand, within GFF3504at 8.971 kb on + strand, within GFF3504at 8.972 kb on - strand, within GFF3504at 8.972 kb on - strand, within GFF3504at 8.972 kb on - strand, within GFF3504at 9.516 kb on + strand, within GFF3505at 9.516 kb on + strand, within GFF3505at 9.517 kb on - strand, within GFF3505at 9.517 kb on - strand, within GFF3505at 9.517 kb on - strand, within GFF3505at 9.603 kb on + strand, within GFF3505at 9.603 kb on + strand, within GFF3505at 9.603 kb on + strand, within GFF3505at 9.717 kb on + strand, within GFF3505at 9.717 kb on + strand, within GFF3505at 9.717 kb on + strand, within GFF3505at 9.717 kb on + strand, within GFF3505at 9.717 kb on + strand, within GFF3505at 9.718 kb on - strand, within GFF3505at 9.939 kb on - strand, within GFF3506at 9.939 kb on - strand, within GFF3506at 9.939 kb on - strand, within GFF3506at 9.939 kb on - strand, within GFF3506at 9.939 kb on - strand, within GFF3506at 9.939 kb on - strand, within GFF3506at 10.119 kb on - strand, within GFF3506at 10.119 kb on - strand, within GFF3506at 10.119 kb on - strand, within GFF3506at 10.119 kb on - strand, within GFF3506at 10.236 kb on - strand, within GFF3506at 10.236 kb on - strand, within GFF3506at 10.236 kb on - strand, within GFF3506at 10.236 kb on - strand, within GFF3506at 10.236 kb on - strand, within GFF3506at 10.236 kb on - strand, within GFF3506at 10.236 kb on - strand, within GFF3506

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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7,417 + GFF3503 0.23 +0.1
7,417 + GFF3503 0.23 +0.1
7,417 + GFF3503 0.23 +0.2
7,417 + GFF3503 0.23 -0.2
7,417 + GFF3503 0.23 +1.0
7,417 + GFF3503 0.23 +0.1
7,417 + GFF3503 0.23 +1.0
7,417 + GFF3503 0.23 -0.2
7,417 + GFF3503 0.23 +0.9
7,417 + GFF3503 0.23 -0.5
7,418 - GFF3503 0.23 -1.8
7,418 - GFF3503 0.23 -0.9
7,418 - GFF3503 0.23 +0.0
7,418 - GFF3503 0.23 +0.4
7,418 - GFF3503 0.23 +0.5
7,418 - GFF3503 0.23 -0.0
7,418 - GFF3503 0.23 -0.3
7,418 - GFF3503 0.23 -1.9
7,418 - GFF3503 0.23 +0.1
7,418 - GFF3503 0.23 -0.4
7,418 - GFF3503 0.23 +0.4
7,418 - GFF3503 0.23 -0.0
7,552 + GFF3503 0.36 +0.3
7,552 + GFF3503 0.36 +0.4
7,553 - GFF3503 0.36 +0.0
7,553 - GFF3503 0.36 +1.1
7,553 - GFF3503 0.36 +0.3
7,553 - GFF3503 0.36 -0.7
7,553 - GFF3503 0.36 +0.1
7,604 - GFF3503 0.41 +0.2
7,705 + GFF3503 0.51 -0.6
7,706 - GFF3503 0.51 +0.4
7,720 + GFF3503 0.53 -0.9
7,721 - GFF3503 0.53 +0.1
7,736 - GFF3503 0.54 +0.5
7,736 - GFF3503 0.54 -0.0
7,736 - GFF3503 0.54 -0.3
7,768 + GFF3503 0.57 +0.7
7,768 + GFF3503 0.57 -0.1
7,768 + GFF3503 0.57 -0.2
7,768 + GFF3503 0.57 -0.2
7,769 - GFF3503 0.57 -0.1
7,769 - GFF3503 0.57 +0.5
7,769 - GFF3503 0.57 -0.5
7,918 + GFF3503 0.72 -0.4
7,918 + GFF3503 0.72 -0.4
7,919 - GFF3503 0.72 -0.4
7,919 - GFF3503 0.72 -0.2
7,919 - GFF3503 0.72 -0.5
8,151 + +0.1
8,151 + -0.2
8,151 + +0.5
8,151 + -0.3
8,151 + -0.2
8,152 - -0.8
8,260 + -1.2
8,260 + +1.2
8,260 + -0.2
8,261 - -0.8
8,261 - +3.0
8,308 + +1.0
8,308 + -0.2
8,309 - -2.7
8,309 - -0.2
8,477 - GFF3504 0.22 +0.7
8,503 + GFF3504 0.25 +0.6
8,504 - GFF3504 0.25 -0.1
8,680 + GFF3504 0.43 +0.1
8,680 + GFF3504 0.43 +0.4
8,681 - GFF3504 0.43 -0.2
8,681 - GFF3504 0.43 +1.1
8,681 - GFF3504 0.43 +0.2
8,681 - GFF3504 0.43 +1.0
8,681 - GFF3504 0.43 -2.6
8,768 - GFF3504 0.51 +0.4
8,768 - GFF3504 0.51 +0.2
8,768 - GFF3504 0.51 -0.6
8,863 + GFF3504 0.61 +0.1
8,863 + GFF3504 0.61 +0.6
8,905 + GFF3504 0.65 -0.5
8,905 + GFF3504 0.65 +0.4
8,905 + GFF3504 0.65 -0.1
8,905 + GFF3504 0.65 +0.2
8,905 + GFF3504 0.65 +0.1
8,905 + GFF3504 0.65 -0.0
8,906 - GFF3504 0.65 +0.1
8,906 - GFF3504 0.65 +1.1
8,906 - GFF3504 0.65 +0.1
8,906 - GFF3504 0.65 -1.2
8,906 - GFF3504 0.65 +0.9
8,920 + GFF3504 0.67 -1.0
8,920 + GFF3504 0.67 -0.9
8,921 - GFF3504 0.67 +1.0
8,921 - GFF3504 0.67 -1.0
8,971 + GFF3504 0.72 -0.4
8,971 + GFF3504 0.72 +0.3
8,971 + GFF3504 0.72 -0.6
8,972 - GFF3504 0.72 -0.2
8,972 - GFF3504 0.72 +1.0
8,972 - GFF3504 0.72 +3.7
9,516 + GFF3505 0.17 -0.9
9,516 + GFF3505 0.17 +0.8
9,517 - GFF3505 0.18 -0.0
9,517 - GFF3505 0.18 +0.4
9,517 - GFF3505 0.18 +0.1
9,603 + GFF3505 0.40 +0.3
9,603 + GFF3505 0.40 +0.4
9,603 + GFF3505 0.40 +0.5
9,717 + GFF3505 0.71 +0.5
9,717 + GFF3505 0.71 +0.1
9,717 + GFF3505 0.71 -0.4
9,717 + GFF3505 0.71 -0.6
9,717 + GFF3505 0.71 +1.0
9,718 - GFF3505 0.71 -0.9
9,939 - GFF3506 0.16 -0.3
9,939 - GFF3506 0.16 -0.0
9,939 - GFF3506 0.16 +0.1
9,939 - GFF3506 0.16 -0.3
9,939 - GFF3506 0.16 -0.3
9,939 - GFF3506 0.16 +0.2
10,119 - GFF3506 0.47 +0.4
10,119 - GFF3506 0.47 -0.4
10,119 - GFF3506 0.47 -0.2
10,119 - GFF3506 0.47 -0.3
10,236 - GFF3506 0.67 -0.4
10,236 - GFF3506 0.67 -1.1
10,236 - GFF3506 0.67 -0.2
10,236 - GFF3506 0.67 +0.1
10,236 - GFF3506 0.67 -0.2
10,236 - GFF3506 0.67 +0.3
10,236 - GFF3506 0.67 +0.1

Or see this region's nucleotide sequence