Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF349 and GFF350 are separated by 229 nucleotides GFF350 and GFF351 are separated by 19 nucleotides GFF351 and GFF352 are separated by 0 nucleotides
GFF349 - Exodeoxyribonuclease VII large subunit (EC 3.1.11.6), at 381,358 to 382,755
GFF349
GFF350 - Ferric siderophore transport system, biopolymer transport protein ExbB, at 382,985 to 383,617
GFF350
GFF351 - Biopolymer transport protein ExbD/TolR, at 383,637 to 384,062
GFF351
GFF352 - Tetraacyldisaccharide 4'-kinase (EC 2.7.1.130), at 384,063 to 385,091
GFF352
Position (kb) 382
383
384 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 382.079 kb on + strand, within GFF349 at 382.079 kb on + strand, within GFF349 at 382.080 kb on - strand, within GFF349 at 382.080 kb on - strand, within GFF349 at 382.080 kb on - strand, within GFF349 at 382.165 kb on + strand, within GFF349 at 382.248 kb on + strand, within GFF349 at 382.248 kb on + strand, within GFF349 at 382.248 kb on + strand, within GFF349 at 382.249 kb on - strand, within GFF349 at 382.249 kb on - strand, within GFF349 at 382.249 kb on - strand, within GFF349 at 382.391 kb on + strand, within GFF349 at 382.391 kb on + strand, within GFF349 at 382.391 kb on + strand, within GFF349 at 382.391 kb on + strand, within GFF349 at 382.391 kb on + strand, within GFF349 at 382.391 kb on + strand, within GFF349 at 382.391 kb on + strand, within GFF349 at 382.392 kb on - strand, within GFF349 at 382.392 kb on - strand, within GFF349 at 382.392 kb on - strand, within GFF349 at 382.392 kb on - strand, within GFF349 at 382.392 kb on - strand, within GFF349 at 382.514 kb on + strand, within GFF349 at 382.514 kb on + strand, within GFF349 at 382.514 kb on + strand, within GFF349 at 382.514 kb on + strand, within GFF349 at 382.514 kb on + strand, within GFF349 at 382.514 kb on + strand, within GFF349 at 382.514 kb on + strand, within GFF349 at 382.514 kb on + strand, within GFF349 at 382.514 kb on + strand, within GFF349 at 382.515 kb on - strand, within GFF349 at 382.515 kb on - strand, within GFF349 at 382.515 kb on - strand, within GFF349 at 382.515 kb on - strand, within GFF349 at 382.515 kb on - strand, within GFF349 at 382.515 kb on - strand, within GFF349 at 382.515 kb on - strand, within GFF349 at 382.515 kb on - strand, within GFF349 at 382.515 kb on - strand, within GFF349 at 382.515 kb on - strand, within GFF349 at 382.527 kb on + strand, within GFF349 at 382.528 kb on - strand, within GFF349 at 382.851 kb on + strand at 382.851 kb on + strand at 382.852 kb on - strand at 382.852 kb on - strand at 382.864 kb on + strand at 382.865 kb on - strand at 382.944 kb on + strand at 382.966 kb on + strand at 382.966 kb on + strand at 382.998 kb on + strand at 382.998 kb on + strand at 382.998 kb on + strand at 382.998 kb on + strand at 382.998 kb on + strand at 382.998 kb on + strand at 382.998 kb on + strand at 382.998 kb on + strand at 382.998 kb on + strand at 382.998 kb on + strand at 382.998 kb on + strand at 382.998 kb on + strand at 383.062 kb on + strand, within GFF350 at 383.064 kb on + strand, within GFF350 at 383.064 kb on + strand, within GFF350 at 383.064 kb on + strand, within GFF350 at 383.064 kb on + strand, within GFF350 at 383.064 kb on + strand, within GFF350 at 383.064 kb on + strand, within GFF350 at 383.064 kb on + strand, within GFF350 at 383.064 kb on + strand, within GFF350 at 383.065 kb on - strand, within GFF350 at 383.065 kb on - strand, within GFF350 at 383.065 kb on - strand, within GFF350 at 383.065 kb on - strand, within GFF350 at 383.065 kb on - strand, within GFF350 at 383.097 kb on + strand, within GFF350 at 383.098 kb on - strand, within GFF350 at 383.312 kb on + strand, within GFF350 at 383.312 kb on + strand, within GFF350 at 383.474 kb on + strand, within GFF350 at 383.474 kb on + strand, within GFF350 at 383.474 kb on + strand, within GFF350 at 383.474 kb on + strand, within GFF350 at 383.474 kb on + strand, within GFF350 at 383.474 kb on + strand, within GFF350 at 383.474 kb on + strand, within GFF350 at 383.528 kb on + strand, within GFF350 at 383.528 kb on + strand, within GFF350 at 383.552 kb on + strand, within GFF350 at 383.552 kb on + strand, within GFF350 at 383.739 kb on + strand, within GFF351
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 382,079 + GFF349 0.52 +1.0 382,079 + GFF349 0.52 -1.1 382,080 - GFF349 0.52 +0.4 382,080 - GFF349 0.52 -0.8 382,080 - GFF349 0.52 -0.5 382,165 + GFF349 0.58 -0.5 382,248 + GFF349 0.64 -0.6 382,248 + GFF349 0.64 -0.6 382,248 + GFF349 0.64 +0.1 382,249 - GFF349 0.64 +0.9 382,249 - GFF349 0.64 -1.5 382,249 - GFF349 0.64 -0.3 382,391 + GFF349 0.74 -1.2 382,391 + GFF349 0.74 -0.1 382,391 + GFF349 0.74 +0.2 382,391 + GFF349 0.74 +0.7 382,391 + GFF349 0.74 -0.2 382,391 + GFF349 0.74 -0.3 382,391 + GFF349 0.74 -0.2 382,392 - GFF349 0.74 -0.6 382,392 - GFF349 0.74 -0.4 382,392 - GFF349 0.74 -2.1 382,392 - GFF349 0.74 +1.4 382,392 - GFF349 0.74 -0.9 382,514 + GFF349 0.83 -0.1 382,514 + GFF349 0.83 -0.8 382,514 + GFF349 0.83 -0.4 382,514 + GFF349 0.83 -0.4 382,514 + GFF349 0.83 -0.8 382,514 + GFF349 0.83 -0.0 382,514 + GFF349 0.83 -0.4 382,514 + GFF349 0.83 -0.4 382,514 + GFF349 0.83 +0.6 382,515 - GFF349 0.83 -0.0 382,515 - GFF349 0.83 +0.2 382,515 - GFF349 0.83 -0.4 382,515 - GFF349 0.83 -0.5 382,515 - GFF349 0.83 -1.3 382,515 - GFF349 0.83 -1.4 382,515 - GFF349 0.83 -0.4 382,515 - GFF349 0.83 -1.0 382,515 - GFF349 0.83 -1.1 382,515 - GFF349 0.83 +3.0 382,527 + GFF349 0.84 -1.3 382,528 - GFF349 0.84 -0.6 382,851 + -0.1 382,851 + -2.1 382,852 - -1.0 382,852 - +0.4 382,864 + -0.8 382,865 - +0.6 382,944 + -0.9 382,966 + -0.8 382,966 + +0.3 382,998 + +0.7 382,998 + +0.3 382,998 + -0.3 382,998 + +0.2 382,998 + +0.1 382,998 + +0.6 382,998 + -0.6 382,998 + +0.2 382,998 + +1.4 382,998 + +0.3 382,998 + -0.2 382,998 + +1.8 383,062 + GFF350 0.12 -1.2 383,064 + GFF350 0.12 -0.6 383,064 + GFF350 0.12 +0.1 383,064 + GFF350 0.12 +3.0 383,064 + GFF350 0.12 -0.6 383,064 + GFF350 0.12 -0.2 383,064 + GFF350 0.12 +1.6 383,064 + GFF350 0.12 -1.5 383,064 + GFF350 0.12 +0.8 383,065 - GFF350 0.13 -0.3 383,065 - GFF350 0.13 -0.6 383,065 - GFF350 0.13 +1.0 383,065 - GFF350 0.13 -0.8 383,065 - GFF350 0.13 +0.1 383,097 + GFF350 0.18 +1.5 383,098 - GFF350 0.18 -0.6 383,312 + GFF350 0.52 +0.5 383,312 + GFF350 0.52 -0.8 383,474 + GFF350 0.77 -0.0 383,474 + GFF350 0.77 +0.3 383,474 + GFF350 0.77 +1.2 383,474 + GFF350 0.77 +0.3 383,474 + GFF350 0.77 +0.6 383,474 + GFF350 0.77 +0.4 383,474 + GFF350 0.77 +0.6 383,528 + GFF350 0.86 +0.1 383,528 + GFF350 0.86 +0.7 383,552 + GFF350 0.90 +3.0 383,552 + GFF350 0.90 +1.0 383,739 + GFF351 0.24 +0.9
Or see this region's nucleotide sequence