Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3468 and GFF3469 are separated by 13 nucleotides GFF3469 and GFF3470 overlap by 4 nucleotides GFF3470 and GFF3471 are separated by 91 nucleotides
GFF3468 - Nucleoside-diphosphate-sugar epimerases, at 288,865 to 289,857
GFF3468
GFF3469 - Glutaminase (EC 3.5.1.2), at 289,871 to 290,824
GFF3469
GFF3470 - Permease of the drug/metabolite transporter (DMT) superfamily, at 290,821 to 291,729
GFF3470
GFF3471 - hypothetical protein, at 291,821 to 292,321
GFF3471
Position (kb) 289
290
291 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 289.125 kb on - strand, within GFF3468 at 289.125 kb on - strand, within GFF3468 at 289.198 kb on + strand, within GFF3468 at 289.199 kb on - strand, within GFF3468 at 289.199 kb on - strand, within GFF3468 at 289.199 kb on - strand, within GFF3468 at 289.429 kb on + strand, within GFF3468 at 289.429 kb on + strand, within GFF3468 at 289.429 kb on + strand, within GFF3468 at 289.429 kb on + strand, within GFF3468 at 289.430 kb on - strand, within GFF3468 at 289.465 kb on + strand, within GFF3468 at 289.466 kb on - strand, within GFF3468 at 289.466 kb on - strand, within GFF3468 at 289.466 kb on - strand, within GFF3468 at 289.708 kb on + strand, within GFF3468 at 289.709 kb on - strand, within GFF3468 at 289.709 kb on - strand, within GFF3468 at 290.067 kb on + strand, within GFF3469 at 290.067 kb on + strand, within GFF3469 at 290.068 kb on - strand, within GFF3469 at 290.068 kb on - strand, within GFF3469 at 290.068 kb on - strand, within GFF3469 at 290.068 kb on - strand, within GFF3469 at 290.226 kb on + strand, within GFF3469 at 290.226 kb on + strand, within GFF3469 at 290.226 kb on + strand, within GFF3469 at 290.226 kb on + strand, within GFF3469 at 290.227 kb on - strand, within GFF3469 at 290.721 kb on + strand, within GFF3469 at 290.722 kb on - strand, within GFF3469 at 290.722 kb on - strand, within GFF3469 at 290.722 kb on - strand, within GFF3469 at 290.722 kb on - strand, within GFF3469 at 290.722 kb on - strand, within GFF3469 at 290.722 kb on - strand, within GFF3469 at 290.722 kb on - strand, within GFF3469 at 290.722 kb on - strand, within GFF3469 at 290.722 kb on - strand, within GFF3469 at 290.722 kb on - strand, within GFF3469 at 290.836 kb on + strand at 290.836 kb on + strand at 291.023 kb on + strand, within GFF3470 at 291.023 kb on + strand, within GFF3470 at 291.024 kb on - strand, within GFF3470 at 291.024 kb on - strand, within GFF3470 at 291.024 kb on - strand, within GFF3470 at 291.155 kb on + strand, within GFF3470 at 291.155 kb on + strand, within GFF3470 at 291.155 kb on + strand, within GFF3470 at 291.155 kb on + strand, within GFF3470 at 291.156 kb on - strand, within GFF3470 at 291.156 kb on - strand, within GFF3470 at 291.156 kb on - strand, within GFF3470 at 291.413 kb on + strand, within GFF3470 at 291.413 kb on + strand, within GFF3470 at 291.413 kb on + strand, within GFF3470 at 291.413 kb on + strand, within GFF3470 at 291.413 kb on + strand, within GFF3470 at 291.414 kb on - strand, within GFF3470 at 291.414 kb on - strand, within GFF3470 at 291.414 kb on - strand, within GFF3470 at 291.553 kb on + strand, within GFF3470 at 291.553 kb on + strand, within GFF3470 at 291.553 kb on + strand, within GFF3470 at 291.554 kb on - strand, within GFF3470 at 291.776 kb on + strand at 291.777 kb on - strand at 291.795 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 289,125 - GFF3468 0.26 +0.1 289,125 - GFF3468 0.26 -0.5 289,198 + GFF3468 0.34 +0.3 289,199 - GFF3468 0.34 +1.4 289,199 - GFF3468 0.34 +0.5 289,199 - GFF3468 0.34 +0.6 289,429 + GFF3468 0.57 -0.8 289,429 + GFF3468 0.57 +1.2 289,429 + GFF3468 0.57 -0.3 289,429 + GFF3468 0.57 -0.8 289,430 - GFF3468 0.57 -0.2 289,465 + GFF3468 0.60 -0.1 289,466 - GFF3468 0.61 -0.6 289,466 - GFF3468 0.61 -0.7 289,466 - GFF3468 0.61 -0.3 289,708 + GFF3468 0.85 +0.0 289,709 - GFF3468 0.85 +1.3 289,709 - GFF3468 0.85 -0.6 290,067 + GFF3469 0.21 +0.2 290,067 + GFF3469 0.21 -0.1 290,068 - GFF3469 0.21 -0.3 290,068 - GFF3469 0.21 -0.8 290,068 - GFF3469 0.21 -0.4 290,068 - GFF3469 0.21 +0.2 290,226 + GFF3469 0.37 -0.5 290,226 + GFF3469 0.37 -1.4 290,226 + GFF3469 0.37 -0.7 290,226 + GFF3469 0.37 -1.1 290,227 - GFF3469 0.37 -0.2 290,721 + GFF3469 0.89 +0.5 290,722 - GFF3469 0.89 -0.5 290,722 - GFF3469 0.89 -1.0 290,722 - GFF3469 0.89 +0.1 290,722 - GFF3469 0.89 -1.5 290,722 - GFF3469 0.89 +0.9 290,722 - GFF3469 0.89 -0.2 290,722 - GFF3469 0.89 -0.3 290,722 - GFF3469 0.89 -0.6 290,722 - GFF3469 0.89 -0.2 290,722 - GFF3469 0.89 +1.3 290,836 + -0.8 290,836 + +0.0 291,023 + GFF3470 0.22 -1.9 291,023 + GFF3470 0.22 +1.4 291,024 - GFF3470 0.22 +0.0 291,024 - GFF3470 0.22 -0.1 291,024 - GFF3470 0.22 +0.9 291,155 + GFF3470 0.37 -0.7 291,155 + GFF3470 0.37 +0.6 291,155 + GFF3470 0.37 +0.0 291,155 + GFF3470 0.37 -0.2 291,156 - GFF3470 0.37 -1.1 291,156 - GFF3470 0.37 -0.4 291,156 - GFF3470 0.37 +0.1 291,413 + GFF3470 0.65 +0.4 291,413 + GFF3470 0.65 -0.0 291,413 + GFF3470 0.65 -0.1 291,413 + GFF3470 0.65 -0.6 291,413 + GFF3470 0.65 -0.5 291,414 - GFF3470 0.65 -0.2 291,414 - GFF3470 0.65 -0.7 291,414 - GFF3470 0.65 -0.2 291,553 + GFF3470 0.81 +2.5 291,553 + GFF3470 0.81 +4.4 291,553 + GFF3470 0.81 -0.0 291,554 - GFF3470 0.81 -0.3 291,776 + -0.7 291,777 - +0.3 291,795 - -0.8
Or see this region's nucleotide sequence