Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3450 and GFF3451 are separated by 16 nucleotides GFF3451 and GFF3452 are separated by 16 nucleotides GFF3452 and GFF3453 are separated by 64 nucleotides GFF3453 and GFF3454 are separated by 124 nucleotides
GFF3450 - Transcriptional regulator, LacI family, at 272,510 to 273,544
GFF3450
GFF3451 - no description, at 273,561 to 273,908
GFF3451
GFF3452 - hypothetical protein, at 273,925 to 275,598
GFF3452
GFF3453 - hypothetical protein, at 275,663 to 275,857
GFF3453
GFF3454 - Cys regulon transcriptional activator CysB, at 275,982 to 276,872
GFF3454
Position (kb) 273
274
275
276 Strain fitness (log2 ratio) -1
0
1 at 273.197 kb on + strand, within GFF3450 at 273.197 kb on + strand, within GFF3450 at 273.197 kb on + strand, within GFF3450 at 273.198 kb on - strand, within GFF3450 at 273.299 kb on + strand, within GFF3450 at 273.562 kb on + strand at 273.562 kb on + strand at 273.562 kb on + strand at 273.562 kb on + strand at 273.562 kb on + strand at 273.563 kb on - strand at 273.563 kb on - strand at 273.563 kb on - strand at 273.733 kb on + strand, within GFF3451 at 273.926 kb on + strand at 273.927 kb on - strand at 273.927 kb on - strand at 273.927 kb on - strand at 274.116 kb on - strand, within GFF3452 at 274.116 kb on - strand, within GFF3452 at 274.367 kb on + strand, within GFF3452 at 274.367 kb on + strand, within GFF3452 at 274.367 kb on + strand, within GFF3452 at 274.367 kb on + strand, within GFF3452 at 274.367 kb on + strand, within GFF3452 at 274.367 kb on + strand, within GFF3452 at 274.368 kb on - strand, within GFF3452 at 274.368 kb on - strand, within GFF3452 at 274.811 kb on + strand, within GFF3452 at 274.812 kb on - strand, within GFF3452 at 274.854 kb on - strand, within GFF3452 at 275.015 kb on - strand, within GFF3452 at 275.904 kb on - strand at 275.949 kb on + strand at 276.378 kb on + strand, within GFF3454 at 276.378 kb on + strand, within GFF3454 at 276.379 kb on - strand, within GFF3454 at 276.588 kb on + strand, within GFF3454 at 276.588 kb on + strand, within GFF3454 at 276.588 kb on + strand, within GFF3454 at 276.588 kb on + strand, within GFF3454 at 276.588 kb on + strand, within GFF3454 at 276.589 kb on - strand, within GFF3454 at 276.589 kb on - strand, within GFF3454
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 273,197 + GFF3450 0.66 -0.1 273,197 + GFF3450 0.66 -1.2 273,197 + GFF3450 0.66 +0.9 273,198 - GFF3450 0.66 -0.7 273,299 + GFF3450 0.76 +1.2 273,562 + +0.2 273,562 + +0.3 273,562 + -0.1 273,562 + +0.3 273,562 + -0.2 273,563 - -1.1 273,563 - -0.3 273,563 - +0.5 273,733 + GFF3451 0.49 +0.1 273,926 + -0.0 273,927 - -0.3 273,927 - -0.4 273,927 - -0.2 274,116 - GFF3452 0.11 +0.0 274,116 - GFF3452 0.11 -0.5 274,367 + GFF3452 0.26 +0.1 274,367 + GFF3452 0.26 -0.4 274,367 + GFF3452 0.26 -0.0 274,367 + GFF3452 0.26 -0.9 274,367 + GFF3452 0.26 -0.1 274,367 + GFF3452 0.26 -0.1 274,368 - GFF3452 0.26 -0.9 274,368 - GFF3452 0.26 -0.7 274,811 + GFF3452 0.53 -0.5 274,812 - GFF3452 0.53 -0.7 274,854 - GFF3452 0.55 -0.3 275,015 - GFF3452 0.65 -0.7 275,904 - -0.8 275,949 + -0.8 276,378 + GFF3454 0.44 -0.1 276,378 + GFF3454 0.44 -0.4 276,379 - GFF3454 0.45 +0.2 276,588 + GFF3454 0.68 +0.5 276,588 + GFF3454 0.68 -0.0 276,588 + GFF3454 0.68 +0.3 276,588 + GFF3454 0.68 -0.1 276,588 + GFF3454 0.68 -0.7 276,589 - GFF3454 0.68 -0.4 276,589 - GFF3454 0.68 +0.7
Or see this region's nucleotide sequence