Strain Fitness in Variovorax sp. SCN45 around GFF3410

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3409 and GFF3410 are separated by 113 nucleotidesGFF3410 and GFF3411 are separated by 51 nucleotides GFF3409 - Probable lipoprotein signal peptide, at 232,505 to 233,539 GFF3409 GFF3410 - Transcriptional regulator, AraC family, at 233,653 to 234,780 GFF3410 GFF3411 - hypothetical protein, at 234,832 to 235,839 GFF3411 Position (kb) 233 234 235Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 233.079 kb on + strand, within GFF3409at 233.079 kb on + strand, within GFF3409at 233.079 kb on + strand, within GFF3409at 233.079 kb on + strand, within GFF3409at 233.079 kb on + strand, within GFF3409at 233.079 kb on + strand, within GFF3409at 233.079 kb on + strand, within GFF3409at 233.079 kb on + strand, within GFF3409at 233.079 kb on + strand, within GFF3409at 233.080 kb on - strand, within GFF3409at 233.080 kb on - strand, within GFF3409at 233.080 kb on - strand, within GFF3409at 233.080 kb on - strand, within GFF3409at 233.208 kb on + strand, within GFF3409at 233.208 kb on + strand, within GFF3409at 233.208 kb on + strand, within GFF3409at 233.208 kb on + strand, within GFF3409at 233.208 kb on + strand, within GFF3409at 233.208 kb on + strand, within GFF3409at 233.208 kb on + strand, within GFF3409at 233.208 kb on + strand, within GFF3409at 233.208 kb on + strand, within GFF3409at 233.209 kb on - strand, within GFF3409at 233.209 kb on - strand, within GFF3409at 233.209 kb on - strand, within GFF3409at 233.209 kb on - strand, within GFF3409at 233.209 kb on - strand, within GFF3409at 233.209 kb on - strand, within GFF3409at 233.209 kb on - strand, within GFF3409at 233.415 kb on + strand, within GFF3409at 233.415 kb on + strand, within GFF3409at 233.415 kb on + strand, within GFF3409at 233.415 kb on + strand, within GFF3409at 233.416 kb on - strand, within GFF3409at 233.416 kb on - strand, within GFF3409at 233.416 kb on - strand, within GFF3409at 233.416 kb on - strand, within GFF3409at 233.416 kb on - strand, within GFF3409at 233.416 kb on - strand, within GFF3409at 233.650 kb on - strandat 233.650 kb on - strandat 233.684 kb on + strandat 233.894 kb on + strand, within GFF3410at 234.257 kb on + strand, within GFF3410at 234.310 kb on + strand, within GFF3410at 234.310 kb on + strand, within GFF3410at 234.310 kb on + strand, within GFF3410at 234.311 kb on - strand, within GFF3410at 234.311 kb on - strand, within GFF3410at 234.817 kb on - strandat 234.833 kb on + strandat 234.833 kb on + strandat 234.834 kb on - strandat 234.834 kb on - strandat 234.834 kb on - strandat 234.834 kb on - strandat 234.835 kb on + strandat 234.835 kb on + strandat 234.836 kb on - strandat 234.836 kb on - strandat 234.836 kb on - strandat 234.836 kb on - strandat 234.853 kb on + strandat 234.853 kb on + strandat 234.853 kb on + strandat 234.853 kb on + strandat 234.853 kb on + strandat 234.853 kb on + strandat 234.853 kb on + strandat 234.853 kb on + strandat 234.853 kb on + strandat 234.853 kb on + strandat 234.853 kb on + strandat 234.853 kb on + strandat 234.853 kb on + strandat 234.853 kb on + strandat 234.853 kb on + strandat 234.854 kb on - strandat 234.854 kb on - strandat 234.854 kb on - strandat 234.854 kb on - strandat 234.854 kb on - strandat 234.854 kb on - strandat 234.854 kb on - strandat 234.854 kb on - strandat 234.854 kb on - strandat 234.854 kb on - strandat 234.854 kb on - strandat 234.864 kb on + strandat 234.892 kb on + strandat 234.893 kb on - strandat 234.893 kb on - strandat 234.893 kb on - strandat 234.901 kb on + strandat 234.901 kb on + strandat 234.901 kb on + strandat 234.901 kb on + strandat 234.902 kb on - strandat 234.902 kb on - strandat 234.910 kb on + strandat 234.910 kb on + strandat 234.911 kb on - strandat 234.911 kb on - strandat 234.944 kb on + strand, within GFF3411at 234.945 kb on - strand, within GFF3411at 234.960 kb on + strand, within GFF3411at 235.018 kb on + strand, within GFF3411at 235.030 kb on + strand, within GFF3411at 235.030 kb on + strand, within GFF3411at 235.030 kb on + strand, within GFF3411at 235.031 kb on - strand, within GFF3411at 235.031 kb on - strand, within GFF3411at 235.031 kb on - strand, within GFF3411at 235.031 kb on - strand, within GFF3411at 235.047 kb on - strand, within GFF3411at 235.047 kb on - strand, within GFF3411at 235.060 kb on + strand, within GFF3411at 235.060 kb on + strand, within GFF3411at 235.061 kb on - strand, within GFF3411at 235.061 kb on - strand, within GFF3411at 235.061 kb on - strand, within GFF3411at 235.061 kb on - strand, within GFF3411at 235.081 kb on + strand, within GFF3411at 235.081 kb on + strand, within GFF3411at 235.082 kb on - strand, within GFF3411at 235.082 kb on - strand, within GFF3411at 235.082 kb on - strand, within GFF3411at 235.082 kb on - strand, within GFF3411at 235.082 kb on - strand, within GFF3411at 235.082 kb on - strand, within GFF3411at 235.082 kb on - strand, within GFF3411at 235.082 kb on - strand, within GFF3411at 235.082 kb on - strand, within GFF3411at 235.082 kb on - strand, within GFF3411at 235.093 kb on + strand, within GFF3411at 235.093 kb on + strand, within GFF3411at 235.115 kb on + strand, within GFF3411at 235.116 kb on - strand, within GFF3411at 235.116 kb on - strand, within GFF3411at 235.133 kb on + strand, within GFF3411at 235.134 kb on - strand, within GFF3411at 235.210 kb on + strand, within GFF3411at 235.210 kb on + strand, within GFF3411at 235.210 kb on + strand, within GFF3411at 235.211 kb on - strand, within GFF3411at 235.211 kb on - strand, within GFF3411at 235.211 kb on - strand, within GFF3411at 235.224 kb on - strand, within GFF3411at 235.224 kb on - strand, within GFF3411at 235.226 kb on + strand, within GFF3411at 235.226 kb on + strand, within GFF3411at 235.226 kb on + strand, within GFF3411at 235.226 kb on + strand, within GFF3411at 235.226 kb on + strand, within GFF3411at 235.227 kb on - strand, within GFF3411at 235.227 kb on - strand, within GFF3411at 235.227 kb on - strand, within GFF3411at 235.227 kb on - strand, within GFF3411at 235.227 kb on - strand, within GFF3411at 235.227 kb on - strand, within GFF3411at 235.230 kb on + strand, within GFF3411at 235.231 kb on - strand, within GFF3411at 235.231 kb on - strand, within GFF3411at 235.244 kb on + strand, within GFF3411at 235.245 kb on - strand, within GFF3411at 235.245 kb on - strand, within GFF3411at 235.439 kb on + strand, within GFF3411at 235.505 kb on + strand, within GFF3411at 235.505 kb on + strand, within GFF3411at 235.505 kb on + strand, within GFF3411at 235.505 kb on + strand, within GFF3411at 235.505 kb on + strand, within GFF3411at 235.505 kb on + strand, within GFF3411at 235.505 kb on + strand, within GFF3411at 235.505 kb on + strand, within GFF3411at 235.505 kb on + strand, within GFF3411at 235.505 kb on + strand, within GFF3411at 235.505 kb on + strand, within GFF3411at 235.505 kb on + strand, within GFF3411at 235.506 kb on - strand, within GFF3411at 235.506 kb on - strand, within GFF3411at 235.506 kb on - strand, within GFF3411at 235.506 kb on - strand, within GFF3411at 235.506 kb on - strand, within GFF3411at 235.506 kb on - strand, within GFF3411at 235.506 kb on - strand, within GFF3411at 235.506 kb on - strand, within GFF3411at 235.506 kb on - strand, within GFF3411at 235.506 kb on - strand, within GFF3411at 235.506 kb on - strand, within GFF3411at 235.506 kb on - strand, within GFF3411at 235.506 kb on - strand, within GFF3411at 235.506 kb on - strand, within GFF3411at 235.535 kb on + strand, within GFF3411at 235.535 kb on + strand, within GFF3411at 235.535 kb on + strand, within GFF3411at 235.535 kb on + strand, within GFF3411at 235.535 kb on + strand, within GFF3411at 235.536 kb on - strand, within GFF3411at 235.536 kb on - strand, within GFF3411at 235.536 kb on - strand, within GFF3411at 235.536 kb on - strand, within GFF3411at 235.536 kb on - strand, within GFF3411at 235.568 kb on + strand, within GFF3411at 235.568 kb on + strand, within GFF3411at 235.568 kb on + strand, within GFF3411at 235.569 kb on - strand, within GFF3411at 235.569 kb on - strand, within GFF3411at 235.569 kb on - strand, within GFF3411at 235.589 kb on + strand, within GFF3411at 235.655 kb on + strand, within GFF3411at 235.655 kb on + strand, within GFF3411at 235.655 kb on + strand, within GFF3411at 235.655 kb on + strand, within GFF3411at 235.656 kb on - strand, within GFF3411at 235.656 kb on - strand, within GFF3411at 235.656 kb on - strand, within GFF3411at 235.742 kb on + strandat 235.743 kb on - strandat 235.767 kb on - strandat 235.779 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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233,079 + GFF3409 0.55 -0.0
233,079 + GFF3409 0.55 +0.5
233,079 + GFF3409 0.55 -0.4
233,079 + GFF3409 0.55 -0.3
233,079 + GFF3409 0.55 -1.8
233,079 + GFF3409 0.55 -0.0
233,079 + GFF3409 0.55 -0.4
233,079 + GFF3409 0.55 -0.2
233,079 + GFF3409 0.55 +0.8
233,080 - GFF3409 0.56 -1.8
233,080 - GFF3409 0.56 +0.3
233,080 - GFF3409 0.56 -0.4
233,080 - GFF3409 0.56 +0.6
233,208 + GFF3409 0.68 +0.9
233,208 + GFF3409 0.68 -0.1
233,208 + GFF3409 0.68 -0.1
233,208 + GFF3409 0.68 -1.3
233,208 + GFF3409 0.68 +0.5
233,208 + GFF3409 0.68 -0.3
233,208 + GFF3409 0.68 +0.4
233,208 + GFF3409 0.68 -0.6
233,208 + GFF3409 0.68 +1.3
233,209 - GFF3409 0.68 +2.5
233,209 - GFF3409 0.68 -0.6
233,209 - GFF3409 0.68 -0.3
233,209 - GFF3409 0.68 -0.0
233,209 - GFF3409 0.68 +1.6
233,209 - GFF3409 0.68 -0.0
233,209 - GFF3409 0.68 -0.3
233,415 + GFF3409 0.88 +4.4
233,415 + GFF3409 0.88 +0.5
233,415 + GFF3409 0.88 -0.4
233,415 + GFF3409 0.88 -0.7
233,416 - GFF3409 0.88 -1.7
233,416 - GFF3409 0.88 -0.7
233,416 - GFF3409 0.88 +0.4
233,416 - GFF3409 0.88 -0.2
233,416 - GFF3409 0.88 -0.3
233,416 - GFF3409 0.88 +0.2
233,650 - +0.4
233,650 - -0.4
233,684 + -0.4
233,894 + GFF3410 0.21 -0.1
234,257 + GFF3410 0.54 -1.2
234,310 + GFF3410 0.58 -0.4
234,310 + GFF3410 0.58 -1.6
234,310 + GFF3410 0.58 -0.4
234,311 - GFF3410 0.58 -0.4
234,311 - GFF3410 0.58 -0.4
234,817 - -0.0
234,833 + +0.0
234,833 + -0.2
234,834 - +1.5
234,834 - +0.1
234,834 - -0.4
234,834 - -0.7
234,835 + -0.2
234,835 + -0.5
234,836 - -0.2
234,836 - +0.3
234,836 - -0.9
234,836 - +0.1
234,853 + -2.4
234,853 + +0.0
234,853 + +0.3
234,853 + -0.6
234,853 + -0.7
234,853 + -1.0
234,853 + -0.1
234,853 + -0.0
234,853 + -0.3
234,853 + -0.1
234,853 + -0.4
234,853 + -0.7
234,853 + -0.4
234,853 + +0.1
234,853 + -0.6
234,854 - +0.7
234,854 - -0.3
234,854 - +0.4
234,854 - -0.2
234,854 - -0.3
234,854 - +0.1
234,854 - +1.6
234,854 - -0.7
234,854 - -0.7
234,854 - +0.9
234,854 - -0.1
234,864 + -0.7
234,892 + -0.9
234,893 - +0.0
234,893 - -0.4
234,893 - +0.1
234,901 + -0.8
234,901 + -0.2
234,901 + +0.9
234,901 + -0.7
234,902 - -0.2
234,902 - -0.8
234,910 + +0.3
234,910 + -0.1
234,911 - +0.0
234,911 - -0.6
234,944 + GFF3411 0.11 -0.0
234,945 - GFF3411 0.11 -1.0
234,960 + GFF3411 0.13 +0.2
235,018 + GFF3411 0.18 +0.0
235,030 + GFF3411 0.20 +0.6
235,030 + GFF3411 0.20 -0.4
235,030 + GFF3411 0.20 -0.1
235,031 - GFF3411 0.20 -0.7
235,031 - GFF3411 0.20 +0.0
235,031 - GFF3411 0.20 -0.4
235,031 - GFF3411 0.20 +0.5
235,047 - GFF3411 0.21 +0.3
235,047 - GFF3411 0.21 +0.5
235,060 + GFF3411 0.23 -0.4
235,060 + GFF3411 0.23 -0.2
235,061 - GFF3411 0.23 -0.7
235,061 - GFF3411 0.23 -0.4
235,061 - GFF3411 0.23 +0.5
235,061 - GFF3411 0.23 -0.4
235,081 + GFF3411 0.25 +1.7
235,081 + GFF3411 0.25 -0.9
235,082 - GFF3411 0.25 +0.5
235,082 - GFF3411 0.25 -0.9
235,082 - GFF3411 0.25 -1.5
235,082 - GFF3411 0.25 -0.1
235,082 - GFF3411 0.25 -0.7
235,082 - GFF3411 0.25 -1.7
235,082 - GFF3411 0.25 -0.0
235,082 - GFF3411 0.25 -0.2
235,082 - GFF3411 0.25 -0.9
235,082 - GFF3411 0.25 -0.2
235,093 + GFF3411 0.26 -0.3
235,093 + GFF3411 0.26 -0.4
235,115 + GFF3411 0.28 -0.1
235,116 - GFF3411 0.28 +0.2
235,116 - GFF3411 0.28 +1.4
235,133 + GFF3411 0.30 -0.2
235,134 - GFF3411 0.30 -1.8
235,210 + GFF3411 0.38 +1.2
235,210 + GFF3411 0.38 -0.2
235,210 + GFF3411 0.38 +0.1
235,211 - GFF3411 0.38 -0.4
235,211 - GFF3411 0.38 +1.3
235,211 - GFF3411 0.38 -1.2
235,224 - GFF3411 0.39 +0.2
235,224 - GFF3411 0.39 -0.4
235,226 + GFF3411 0.39 -0.1
235,226 + GFF3411 0.39 -0.2
235,226 + GFF3411 0.39 -0.7
235,226 + GFF3411 0.39 -0.7
235,226 + GFF3411 0.39 +0.4
235,227 - GFF3411 0.39 +0.1
235,227 - GFF3411 0.39 -0.2
235,227 - GFF3411 0.39 -0.3
235,227 - GFF3411 0.39 -0.4
235,227 - GFF3411 0.39 +0.1
235,227 - GFF3411 0.39 +0.9
235,230 + GFF3411 0.39 -0.1
235,231 - GFF3411 0.40 +0.2
235,231 - GFF3411 0.40 +0.6
235,244 + GFF3411 0.41 +1.0
235,245 - GFF3411 0.41 -1.5
235,245 - GFF3411 0.41 +0.1
235,439 + GFF3411 0.60 -1.5
235,505 + GFF3411 0.67 +0.0
235,505 + GFF3411 0.67 +0.5
235,505 + GFF3411 0.67 +0.1
235,505 + GFF3411 0.67 -0.6
235,505 + GFF3411 0.67 -0.9
235,505 + GFF3411 0.67 -0.2
235,505 + GFF3411 0.67 -0.3
235,505 + GFF3411 0.67 -0.5
235,505 + GFF3411 0.67 -0.9
235,505 + GFF3411 0.67 +0.6
235,505 + GFF3411 0.67 +0.3
235,505 + GFF3411 0.67 +0.7
235,506 - GFF3411 0.67 -0.1
235,506 - GFF3411 0.67 -0.2
235,506 - GFF3411 0.67 -0.4
235,506 - GFF3411 0.67 -0.1
235,506 - GFF3411 0.67 +0.9
235,506 - GFF3411 0.67 -0.2
235,506 - GFF3411 0.67 +0.5
235,506 - GFF3411 0.67 -0.2
235,506 - GFF3411 0.67 -1.5
235,506 - GFF3411 0.67 +0.5
235,506 - GFF3411 0.67 +0.3
235,506 - GFF3411 0.67 -1.3
235,506 - GFF3411 0.67 +0.3
235,506 - GFF3411 0.67 +1.7
235,535 + GFF3411 0.70 +0.9
235,535 + GFF3411 0.70 +0.0
235,535 + GFF3411 0.70 -0.5
235,535 + GFF3411 0.70 -0.5
235,535 + GFF3411 0.70 -0.1
235,536 - GFF3411 0.70 -1.6
235,536 - GFF3411 0.70 -0.6
235,536 - GFF3411 0.70 -0.5
235,536 - GFF3411 0.70 -0.9
235,536 - GFF3411 0.70 +1.3
235,568 + GFF3411 0.73 -1.5
235,568 + GFF3411 0.73 -0.2
235,568 + GFF3411 0.73 +0.8
235,569 - GFF3411 0.73 +0.3
235,569 - GFF3411 0.73 +0.3
235,569 - GFF3411 0.73 -0.1
235,589 + GFF3411 0.75 -0.1
235,655 + GFF3411 0.82 -1.1
235,655 + GFF3411 0.82 -0.7
235,655 + GFF3411 0.82 -0.2
235,655 + GFF3411 0.82 -0.8
235,656 - GFF3411 0.82 -1.0
235,656 - GFF3411 0.82 +0.2
235,656 - GFF3411 0.82 +0.5
235,742 + -0.1
235,743 - -0.4
235,767 - +1.9
235,779 + -0.2

Or see this region's nucleotide sequence