Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3381 and GFF3382 are separated by 36 nucleotides GFF3382 and GFF3383 are separated by 168 nucleotides GFF3383 and GFF3384 are separated by 34 nucleotides
GFF3381 - Broad-specificity amino acid ABC transporter, substrate-binding protein, at 201,965 to 203,173
GFF3381
GFF3382 - 3-keto-5-aminohexanoate cleavage enzyme (EC 2.3.1.247), at 203,210 to 204,130
GFF3382
GFF3383 - no description, at 204,299 to 204,682
GFF3383
GFF3384 - Transcriptional regulator, Crp/Fnr family, at 204,717 to 205,427
GFF3384
Position (kb) 203
204
205 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 202.233 kb on + strand, within GFF3381 at 202.252 kb on - strand, within GFF3381 at 202.342 kb on - strand, within GFF3381 at 202.359 kb on + strand, within GFF3381 at 202.360 kb on - strand, within GFF3381 at 202.671 kb on + strand, within GFF3381 at 202.671 kb on + strand, within GFF3381 at 202.672 kb on - strand, within GFF3381 at 202.737 kb on + strand, within GFF3381 at 202.738 kb on - strand, within GFF3381 at 202.738 kb on - strand, within GFF3381 at 202.743 kb on + strand, within GFF3381 at 202.743 kb on + strand, within GFF3381 at 202.743 kb on + strand, within GFF3381 at 202.755 kb on + strand, within GFF3381 at 202.756 kb on - strand, within GFF3381 at 202.809 kb on + strand, within GFF3381 at 202.967 kb on + strand, within GFF3381 at 202.967 kb on + strand, within GFF3381 at 203.044 kb on - strand, within GFF3381 at 203.370 kb on + strand, within GFF3382 at 203.370 kb on + strand, within GFF3382 at 203.371 kb on - strand, within GFF3382 at 203.371 kb on - strand, within GFF3382 at 203.371 kb on - strand, within GFF3382 at 203.371 kb on - strand, within GFF3382 at 203.371 kb on - strand, within GFF3382 at 203.371 kb on - strand, within GFF3382 at 203.574 kb on + strand, within GFF3382 at 203.575 kb on - strand, within GFF3382 at 203.575 kb on - strand, within GFF3382 at 203.575 kb on - strand, within GFF3382 at 203.575 kb on - strand, within GFF3382 at 203.937 kb on + strand, within GFF3382 at 203.937 kb on + strand, within GFF3382 at 203.938 kb on - strand, within GFF3382 at 204.230 kb on + strand at 204.230 kb on + strand at 204.231 kb on - strand at 204.680 kb on + strand at 204.681 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 202,233 + GFF3381 0.22 -0.1 202,252 - GFF3381 0.24 -0.0 202,342 - GFF3381 0.31 +0.1 202,359 + GFF3381 0.33 -0.5 202,360 - GFF3381 0.33 -0.5 202,671 + GFF3381 0.58 +0.7 202,671 + GFF3381 0.58 -1.1 202,672 - GFF3381 0.58 -1.8 202,737 + GFF3381 0.64 -1.7 202,738 - GFF3381 0.64 +0.2 202,738 - GFF3381 0.64 -0.2 202,743 + GFF3381 0.64 +1.9 202,743 + GFF3381 0.64 -0.5 202,743 + GFF3381 0.64 -0.8 202,755 + GFF3381 0.65 +0.2 202,756 - GFF3381 0.65 +0.9 202,809 + GFF3381 0.70 +0.1 202,967 + GFF3381 0.83 -0.2 202,967 + GFF3381 0.83 -1.2 203,044 - GFF3381 0.89 +0.2 203,370 + GFF3382 0.17 -0.1 203,370 + GFF3382 0.17 -1.0 203,371 - GFF3382 0.17 +0.1 203,371 - GFF3382 0.17 +0.9 203,371 - GFF3382 0.17 +0.2 203,371 - GFF3382 0.17 +0.8 203,371 - GFF3382 0.17 -1.2 203,371 - GFF3382 0.17 +1.5 203,574 + GFF3382 0.40 +0.1 203,575 - GFF3382 0.40 -0.3 203,575 - GFF3382 0.40 +0.1 203,575 - GFF3382 0.40 -1.0 203,575 - GFF3382 0.40 +3.2 203,937 + GFF3382 0.79 +1.9 203,937 + GFF3382 0.79 -0.7 203,938 - GFF3382 0.79 +0.9 204,230 + +0.1 204,230 + -0.1 204,231 - +2.5 204,680 + -0.1 204,681 - +0.1
Or see this region's nucleotide sequence