Strain Fitness in Variovorax sp. SCN45 around GFF3284

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3283 and GFF3284 overlap by 1 nucleotidesGFF3284 and GFF3285 overlap by 35 nucleotides GFF3283 - ClpB protein, at 104,800 to 108,003 GFF3283 GFF3284 - hypothetical protein, at 108,003 to 111,272 GFF3284 GFF3285 - ATP-dependent Clp protease ATP-binding subunit ClpA, at 111,238 to 113,565 GFF3285 Position (kb) 108 109 110 111 112Strain fitness (log2 ratio) -2 -1 0 1 2 3at 107.158 kb on + strand, within GFF3283at 107.159 kb on - strand, within GFF3283at 107.313 kb on - strand, within GFF3283at 107.429 kb on - strand, within GFF3283at 107.429 kb on - strand, within GFF3283at 107.620 kb on + strand, within GFF3283at 107.621 kb on - strand, within GFF3283at 107.621 kb on - strand, within GFF3283at 107.710 kb on + strandat 107.710 kb on + strandat 107.710 kb on + strandat 107.710 kb on + strandat 107.710 kb on + strandat 107.710 kb on + strandat 107.711 kb on - strandat 107.711 kb on - strandat 108.064 kb on - strandat 108.114 kb on + strandat 108.115 kb on - strandat 108.115 kb on - strandat 108.177 kb on - strandat 108.321 kb on + strandat 108.322 kb on - strandat 108.645 kb on + strand, within GFF3284at 108.711 kb on + strand, within GFF3284at 108.711 kb on + strand, within GFF3284at 108.712 kb on - strand, within GFF3284at 108.984 kb on + strand, within GFF3284at 108.984 kb on + strand, within GFF3284at 108.984 kb on + strand, within GFF3284at 108.984 kb on + strand, within GFF3284at 108.984 kb on + strand, within GFF3284at 108.985 kb on - strand, within GFF3284at 108.985 kb on - strand, within GFF3284at 108.985 kb on - strand, within GFF3284at 108.985 kb on - strand, within GFF3284at 109.404 kb on + strand, within GFF3284at 109.404 kb on + strand, within GFF3284at 109.404 kb on + strand, within GFF3284at 109.405 kb on - strand, within GFF3284at 109.416 kb on + strand, within GFF3284at 109.416 kb on + strand, within GFF3284at 109.416 kb on + strand, within GFF3284at 109.417 kb on - strand, within GFF3284at 109.417 kb on - strand, within GFF3284at 109.543 kb on + strand, within GFF3284at 109.543 kb on + strand, within GFF3284at 109.647 kb on + strand, within GFF3284at 109.647 kb on + strand, within GFF3284at 109.647 kb on + strand, within GFF3284at 109.648 kb on - strand, within GFF3284at 109.695 kb on + strand, within GFF3284at 109.695 kb on + strand, within GFF3284at 109.695 kb on + strand, within GFF3284at 109.695 kb on + strand, within GFF3284at 109.695 kb on + strand, within GFF3284at 109.695 kb on + strand, within GFF3284at 109.695 kb on + strand, within GFF3284at 109.696 kb on - strand, within GFF3284at 109.696 kb on - strand, within GFF3284at 109.696 kb on - strand, within GFF3284at 109.696 kb on - strand, within GFF3284at 109.696 kb on - strand, within GFF3284at 109.696 kb on - strand, within GFF3284at 109.956 kb on - strand, within GFF3284at 109.991 kb on + strand, within GFF3284at 109.991 kb on + strand, within GFF3284at 109.991 kb on + strand, within GFF3284at 109.991 kb on + strand, within GFF3284at 109.991 kb on + strand, within GFF3284at 109.991 kb on + strand, within GFF3284at 109.992 kb on - strand, within GFF3284at 109.992 kb on - strand, within GFF3284at 109.992 kb on - strand, within GFF3284at 109.992 kb on - strand, within GFF3284at 109.992 kb on - strand, within GFF3284at 109.992 kb on - strand, within GFF3284at 109.992 kb on - strand, within GFF3284at 109.992 kb on - strand, within GFF3284at 109.995 kb on + strand, within GFF3284at 109.995 kb on + strand, within GFF3284at 109.995 kb on + strand, within GFF3284at 109.995 kb on + strand, within GFF3284at 109.996 kb on - strand, within GFF3284at 110.364 kb on + strand, within GFF3284at 110.364 kb on + strand, within GFF3284at 110.364 kb on + strand, within GFF3284at 110.364 kb on + strand, within GFF3284at 110.364 kb on + strand, within GFF3284at 110.418 kb on + strand, within GFF3284at 110.895 kb on + strand, within GFF3284at 110.895 kb on + strand, within GFF3284at 110.895 kb on + strand, within GFF3284at 110.895 kb on + strand, within GFF3284at 110.895 kb on + strand, within GFF3284at 110.896 kb on - strand, within GFF3284at 110.896 kb on - strand, within GFF3284at 110.896 kb on - strand, within GFF3284at 110.896 kb on - strand, within GFF3284at 111.018 kb on + strandat 111.018 kb on + strandat 111.018 kb on + strandat 111.018 kb on + strandat 111.019 kb on - strandat 111.019 kb on - strandat 111.019 kb on - strandat 111.383 kb on + strandat 111.383 kb on + strandat 111.383 kb on + strandat 111.383 kb on + strandat 111.383 kb on + strandat 111.383 kb on + strandat 111.383 kb on + strandat 111.383 kb on + strandat 111.383 kb on + strandat 111.383 kb on + strandat 111.383 kb on + strandat 111.384 kb on - strandat 111.384 kb on - strandat 111.384 kb on - strandat 111.384 kb on - strandat 111.454 kb on + strandat 111.454 kb on + strandat 111.454 kb on + strandat 111.454 kb on + strandat 111.454 kb on + strandat 111.454 kb on + strandat 111.455 kb on - strandat 111.455 kb on - strandat 111.455 kb on - strandat 111.455 kb on - strandat 111.455 kb on - strandat 111.608 kb on - strand, within GFF3285at 111.619 kb on + strand, within GFF3285at 111.619 kb on + strand, within GFF3285at 111.619 kb on + strand, within GFF3285at 111.619 kb on + strand, within GFF3285at 111.619 kb on + strand, within GFF3285at 111.619 kb on + strand, within GFF3285at 111.619 kb on + strand, within GFF3285at 111.619 kb on + strand, within GFF3285at 111.619 kb on + strand, within GFF3285at 111.620 kb on - strand, within GFF3285at 111.620 kb on - strand, within GFF3285at 111.620 kb on - strand, within GFF3285at 111.620 kb on - strand, within GFF3285at 111.620 kb on - strand, within GFF3285at 111.620 kb on - strand, within GFF3285at 111.620 kb on - strand, within GFF3285at 111.646 kb on + strand, within GFF3285at 111.646 kb on + strand, within GFF3285at 111.646 kb on + strand, within GFF3285at 111.646 kb on + strand, within GFF3285at 111.646 kb on + strand, within GFF3285at 111.646 kb on + strand, within GFF3285at 111.646 kb on + strand, within GFF3285at 111.646 kb on + strand, within GFF3285at 111.646 kb on + strand, within GFF3285at 111.647 kb on - strand, within GFF3285at 111.647 kb on - strand, within GFF3285at 111.647 kb on - strand, within GFF3285at 111.647 kb on - strand, within GFF3285at 111.647 kb on - strand, within GFF3285at 111.647 kb on - strand, within GFF3285at 111.647 kb on - strand, within GFF3285at 111.647 kb on - strand, within GFF3285at 111.647 kb on - strand, within GFF3285at 111.647 kb on - strand, within GFF3285at 111.647 kb on - strand, within GFF3285at 111.647 kb on - strand, within GFF3285at 111.647 kb on - strand, within GFF3285at 111.649 kb on + strand, within GFF3285at 111.649 kb on + strand, within GFF3285at 111.650 kb on - strand, within GFF3285at 111.650 kb on - strand, within GFF3285at 111.652 kb on + strand, within GFF3285at 111.653 kb on - strand, within GFF3285at 111.653 kb on - strand, within GFF3285at 111.653 kb on - strand, within GFF3285at 111.653 kb on - strand, within GFF3285at 111.688 kb on + strand, within GFF3285at 111.688 kb on + strand, within GFF3285at 111.688 kb on + strand, within GFF3285at 111.688 kb on + strand, within GFF3285at 111.688 kb on + strand, within GFF3285at 111.689 kb on - strand, within GFF3285at 111.689 kb on - strand, within GFF3285at 111.689 kb on - strand, within GFF3285at 111.689 kb on - strand, within GFF3285at 111.689 kb on - strand, within GFF3285at 111.689 kb on - strand, within GFF3285at 111.689 kb on - strand, within GFF3285at 111.689 kb on - strand, within GFF3285at 111.689 kb on - strand, within GFF3285at 111.945 kb on - strand, within GFF3285at 111.945 kb on - strand, within GFF3285at 112.117 kb on + strand, within GFF3285at 112.117 kb on + strand, within GFF3285at 112.117 kb on + strand, within GFF3285at 112.117 kb on + strand, within GFF3285at 112.117 kb on + strand, within GFF3285at 112.117 kb on + strand, within GFF3285at 112.118 kb on - strand, within GFF3285at 112.118 kb on - strand, within GFF3285at 112.118 kb on - strand, within GFF3285at 112.118 kb on - strand, within GFF3285at 112.252 kb on + strand, within GFF3285at 112.252 kb on + strand, within GFF3285at 112.252 kb on + strand, within GFF3285at 112.252 kb on + strand, within GFF3285at 112.253 kb on - strand, within GFF3285at 112.253 kb on - strand, within GFF3285at 112.253 kb on - strand, within GFF3285

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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107,158 + GFF3283 0.74 -1.0
107,159 - GFF3283 0.74 -0.3
107,313 - GFF3283 0.78 -1.6
107,429 - GFF3283 0.82 -0.1
107,429 - GFF3283 0.82 +0.1
107,620 + GFF3283 0.88 -0.3
107,621 - GFF3283 0.88 +0.3
107,621 - GFF3283 0.88 +0.2
107,710 + +1.7
107,710 + -0.1
107,710 + +0.4
107,710 + -0.9
107,710 + +0.1
107,710 + -0.5
107,711 - +0.1
107,711 - -0.3
108,064 - +0.2
108,114 + -1.6
108,115 - -0.7
108,115 - -0.0
108,177 - +0.6
108,321 + +0.1
108,322 - -1.3
108,645 + GFF3284 0.20 -1.1
108,711 + GFF3284 0.22 -0.6
108,711 + GFF3284 0.22 -0.5
108,712 - GFF3284 0.22 -1.6
108,984 + GFF3284 0.30 -1.1
108,984 + GFF3284 0.30 -0.0
108,984 + GFF3284 0.30 +0.7
108,984 + GFF3284 0.30 +0.5
108,984 + GFF3284 0.30 -0.6
108,985 - GFF3284 0.30 -0.2
108,985 - GFF3284 0.30 -0.4
108,985 - GFF3284 0.30 -0.1
108,985 - GFF3284 0.30 +0.7
109,404 + GFF3284 0.43 -0.5
109,404 + GFF3284 0.43 +0.4
109,404 + GFF3284 0.43 -0.5
109,405 - GFF3284 0.43 -0.5
109,416 + GFF3284 0.43 +1.0
109,416 + GFF3284 0.43 -1.1
109,416 + GFF3284 0.43 -0.8
109,417 - GFF3284 0.43 -1.0
109,417 - GFF3284 0.43 -0.1
109,543 + GFF3284 0.47 -1.4
109,543 + GFF3284 0.47 -0.3
109,647 + GFF3284 0.50 -0.4
109,647 + GFF3284 0.50 +0.2
109,647 + GFF3284 0.50 +0.0
109,648 - GFF3284 0.50 +0.1
109,695 + GFF3284 0.52 +0.1
109,695 + GFF3284 0.52 +0.2
109,695 + GFF3284 0.52 +0.3
109,695 + GFF3284 0.52 -0.4
109,695 + GFF3284 0.52 -0.2
109,695 + GFF3284 0.52 -1.4
109,695 + GFF3284 0.52 -0.7
109,696 - GFF3284 0.52 +0.1
109,696 - GFF3284 0.52 -0.6
109,696 - GFF3284 0.52 -2.0
109,696 - GFF3284 0.52 +0.2
109,696 - GFF3284 0.52 -0.3
109,696 - GFF3284 0.52 -1.0
109,956 - GFF3284 0.60 +0.7
109,991 + GFF3284 0.61 -0.3
109,991 + GFF3284 0.61 -0.2
109,991 + GFF3284 0.61 +0.1
109,991 + GFF3284 0.61 -0.1
109,991 + GFF3284 0.61 +0.8
109,991 + GFF3284 0.61 -0.6
109,992 - GFF3284 0.61 -0.1
109,992 - GFF3284 0.61 -0.2
109,992 - GFF3284 0.61 +0.9
109,992 - GFF3284 0.61 -0.8
109,992 - GFF3284 0.61 -0.4
109,992 - GFF3284 0.61 -1.0
109,992 - GFF3284 0.61 -1.2
109,992 - GFF3284 0.61 -0.4
109,995 + GFF3284 0.61 +1.7
109,995 + GFF3284 0.61 -0.7
109,995 + GFF3284 0.61 -0.5
109,995 + GFF3284 0.61 -0.2
109,996 - GFF3284 0.61 -1.2
110,364 + GFF3284 0.72 -0.9
110,364 + GFF3284 0.72 +0.5
110,364 + GFF3284 0.72 -1.1
110,364 + GFF3284 0.72 -0.1
110,364 + GFF3284 0.72 +1.1
110,418 + GFF3284 0.74 -0.4
110,895 + GFF3284 0.88 -0.4
110,895 + GFF3284 0.88 -1.3
110,895 + GFF3284 0.88 -1.2
110,895 + GFF3284 0.88 -0.4
110,895 + GFF3284 0.88 -0.6
110,896 - GFF3284 0.88 -0.1
110,896 - GFF3284 0.88 -0.1
110,896 - GFF3284 0.88 -0.7
110,896 - GFF3284 0.88 +0.4
111,018 + +1.4
111,018 + +0.1
111,018 + +0.9
111,018 + -0.9
111,019 - +0.2
111,019 - -0.3
111,019 - -0.2
111,383 + -0.1
111,383 + -0.6
111,383 + +0.9
111,383 + -2.2
111,383 + +0.3
111,383 + -0.6
111,383 + -1.7
111,383 + +0.1
111,383 + -0.4
111,383 + -0.6
111,383 + -0.4
111,384 - -0.4
111,384 - +0.0
111,384 - -0.4
111,384 - -0.1
111,454 + -0.9
111,454 + -0.8
111,454 + +0.5
111,454 + +0.2
111,454 + -0.9
111,454 + -0.4
111,455 - -0.5
111,455 - +0.3
111,455 - -0.2
111,455 - -1.0
111,455 - -1.4
111,608 - GFF3285 0.16 -0.1
111,619 + GFF3285 0.16 -0.1
111,619 + GFF3285 0.16 -0.5
111,619 + GFF3285 0.16 -0.5
111,619 + GFF3285 0.16 +0.4
111,619 + GFF3285 0.16 +0.9
111,619 + GFF3285 0.16 -1.3
111,619 + GFF3285 0.16 -0.4
111,619 + GFF3285 0.16 -0.4
111,619 + GFF3285 0.16 -0.4
111,620 - GFF3285 0.16 -1.4
111,620 - GFF3285 0.16 -0.4
111,620 - GFF3285 0.16 +0.4
111,620 - GFF3285 0.16 -1.1
111,620 - GFF3285 0.16 -0.9
111,620 - GFF3285 0.16 -0.1
111,620 - GFF3285 0.16 -0.4
111,646 + GFF3285 0.18 +0.7
111,646 + GFF3285 0.18 -0.3
111,646 + GFF3285 0.18 -1.1
111,646 + GFF3285 0.18 -0.0
111,646 + GFF3285 0.18 +0.0
111,646 + GFF3285 0.18 +0.2
111,646 + GFF3285 0.18 -1.6
111,646 + GFF3285 0.18 -0.1
111,646 + GFF3285 0.18 -2.2
111,647 - GFF3285 0.18 -0.3
111,647 - GFF3285 0.18 -0.6
111,647 - GFF3285 0.18 -0.1
111,647 - GFF3285 0.18 -1.5
111,647 - GFF3285 0.18 +0.0
111,647 - GFF3285 0.18 -1.0
111,647 - GFF3285 0.18 -1.2
111,647 - GFF3285 0.18 -0.3
111,647 - GFF3285 0.18 +2.9
111,647 - GFF3285 0.18 +0.6
111,647 - GFF3285 0.18 +0.1
111,647 - GFF3285 0.18 -1.2
111,647 - GFF3285 0.18 +0.8
111,649 + GFF3285 0.18 -0.8
111,649 + GFF3285 0.18 -1.4
111,650 - GFF3285 0.18 -0.3
111,650 - GFF3285 0.18 -0.3
111,652 + GFF3285 0.18 -0.4
111,653 - GFF3285 0.18 -0.6
111,653 - GFF3285 0.18 -0.3
111,653 - GFF3285 0.18 -0.4
111,653 - GFF3285 0.18 -0.8
111,688 + GFF3285 0.19 -0.6
111,688 + GFF3285 0.19 +0.3
111,688 + GFF3285 0.19 +0.6
111,688 + GFF3285 0.19 -0.4
111,688 + GFF3285 0.19 -0.4
111,689 - GFF3285 0.19 -0.3
111,689 - GFF3285 0.19 -1.4
111,689 - GFF3285 0.19 -0.2
111,689 - GFF3285 0.19 -0.2
111,689 - GFF3285 0.19 +0.2
111,689 - GFF3285 0.19 -0.7
111,689 - GFF3285 0.19 -1.6
111,689 - GFF3285 0.19 -0.4
111,689 - GFF3285 0.19 +0.9
111,945 - GFF3285 0.30 -0.6
111,945 - GFF3285 0.30 +0.5
112,117 + GFF3285 0.38 -1.0
112,117 + GFF3285 0.38 -0.1
112,117 + GFF3285 0.38 -0.6
112,117 + GFF3285 0.38 -0.3
112,117 + GFF3285 0.38 -0.1
112,117 + GFF3285 0.38 +0.5
112,118 - GFF3285 0.38 -1.2
112,118 - GFF3285 0.38 -0.2
112,118 - GFF3285 0.38 -0.1
112,118 - GFF3285 0.38 -0.2
112,252 + GFF3285 0.44 -0.3
112,252 + GFF3285 0.44 -1.5
112,252 + GFF3285 0.44 -1.2
112,252 + GFF3285 0.44 -0.4
112,253 - GFF3285 0.44 -0.1
112,253 - GFF3285 0.44 -1.1
112,253 - GFF3285 0.44 -0.1

Or see this region's nucleotide sequence