Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3196 and GFF3197 are separated by 76 nucleotides GFF3197 and GFF3198 are separated by 61 nucleotides GFF3198 and GFF3199 overlap by 4 nucleotides
GFF3196 - Metallophosphoesterase, at 14,172 to 15,098
GFF3196
GFF3197 - hypothetical protein, at 15,175 to 15,642
GFF3197
GFF3198 - hypothetical protein, at 15,704 to 16,156
GFF3198
GFF3199 - Ser/Thr protein phosphatase family protein, at 16,153 to 16,998
GFF3199
Position (kb) 15
16 Strain fitness (log2 ratio) -2
-1
0
1
2 at 14.338 kb on + strand, within GFF3196 at 14.339 kb on - strand, within GFF3196 at 14.339 kb on - strand, within GFF3196 at 14.339 kb on - strand, within GFF3196 at 14.339 kb on - strand, within GFF3196 at 14.339 kb on - strand, within GFF3196 at 14.339 kb on - strand, within GFF3196 at 14.339 kb on - strand, within GFF3196 at 14.421 kb on + strand, within GFF3196 at 14.490 kb on + strand, within GFF3196 at 14.491 kb on - strand, within GFF3196 at 14.491 kb on - strand, within GFF3196 at 14.818 kb on - strand, within GFF3196 at 14.818 kb on - strand, within GFF3196 at 14.921 kb on + strand, within GFF3196 at 14.921 kb on + strand, within GFF3196 at 14.922 kb on - strand, within GFF3196 at 14.922 kb on - strand, within GFF3196 at 15.028 kb on + strand at 15.081 kb on + strand at 15.081 kb on + strand at 15.082 kb on - strand at 15.082 kb on - strand at 15.094 kb on + strand at 15.095 kb on - strand at 15.095 kb on - strand at 15.095 kb on - strand at 15.095 kb on - strand at 15.095 kb on - strand at 15.095 kb on - strand at 15.241 kb on + strand, within GFF3197 at 15.241 kb on + strand, within GFF3197 at 15.241 kb on + strand, within GFF3197 at 15.241 kb on + strand, within GFF3197 at 15.241 kb on + strand, within GFF3197 at 15.241 kb on + strand, within GFF3197 at 15.241 kb on + strand, within GFF3197 at 15.241 kb on + strand, within GFF3197 at 15.241 kb on + strand, within GFF3197 at 15.241 kb on + strand, within GFF3197 at 15.241 kb on + strand, within GFF3197 at 15.241 kb on + strand, within GFF3197 at 15.241 kb on + strand, within GFF3197 at 15.241 kb on + strand, within GFF3197 at 15.241 kb on + strand, within GFF3197 at 15.242 kb on - strand, within GFF3197 at 15.242 kb on - strand, within GFF3197 at 15.242 kb on - strand, within GFF3197 at 15.242 kb on - strand, within GFF3197 at 15.242 kb on - strand, within GFF3197 at 15.242 kb on - strand, within GFF3197 at 15.242 kb on - strand, within GFF3197 at 15.242 kb on - strand, within GFF3197 at 15.242 kb on - strand, within GFF3197 at 15.355 kb on + strand, within GFF3197 at 15.356 kb on - strand, within GFF3197 at 15.445 kb on + strand, within GFF3197 at 15.869 kb on + strand, within GFF3198 at 16.161 kb on - strand at 16.315 kb on + strand, within GFF3199 at 16.315 kb on + strand, within GFF3199 at 16.316 kb on - strand, within GFF3199 at 16.316 kb on - strand, within GFF3199 at 16.336 kb on + strand, within GFF3199 at 16.337 kb on - strand, within GFF3199 at 16.337 kb on - strand, within GFF3199 at 16.337 kb on - strand, within GFF3199 at 16.339 kb on + strand, within GFF3199 at 16.340 kb on - strand, within GFF3199 at 16.340 kb on - strand, within GFF3199 at 16.340 kb on - strand, within GFF3199 at 16.555 kb on + strand, within GFF3199 at 16.555 kb on + strand, within GFF3199
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 14,338 + GFF3196 0.18 -0.1 14,339 - GFF3196 0.18 +0.0 14,339 - GFF3196 0.18 -0.7 14,339 - GFF3196 0.18 +0.7 14,339 - GFF3196 0.18 -0.4 14,339 - GFF3196 0.18 +0.7 14,339 - GFF3196 0.18 -0.2 14,339 - GFF3196 0.18 -0.5 14,421 + GFF3196 0.27 +0.1 14,490 + GFF3196 0.34 -0.8 14,491 - GFF3196 0.34 -0.9 14,491 - GFF3196 0.34 -0.9 14,818 - GFF3196 0.70 +0.3 14,818 - GFF3196 0.70 +0.7 14,921 + GFF3196 0.81 +0.1 14,921 + GFF3196 0.81 -1.5 14,922 - GFF3196 0.81 -0.2 14,922 - GFF3196 0.81 -0.3 15,028 + -0.0 15,081 + +0.1 15,081 + +2.5 15,082 - +0.4 15,082 - +0.9 15,094 + +0.7 15,095 - +1.5 15,095 - -0.5 15,095 - -0.6 15,095 - -0.1 15,095 - +0.1 15,095 - -0.3 15,241 + GFF3197 0.14 -0.1 15,241 + GFF3197 0.14 +0.3 15,241 + GFF3197 0.14 +0.2 15,241 + GFF3197 0.14 +0.0 15,241 + GFF3197 0.14 -0.2 15,241 + GFF3197 0.14 +0.4 15,241 + GFF3197 0.14 -1.8 15,241 + GFF3197 0.14 -0.9 15,241 + GFF3197 0.14 +0.5 15,241 + GFF3197 0.14 +1.1 15,241 + GFF3197 0.14 +0.1 15,241 + GFF3197 0.14 +0.1 15,241 + GFF3197 0.14 +0.3 15,241 + GFF3197 0.14 +0.5 15,241 + GFF3197 0.14 +0.1 15,242 - GFF3197 0.14 +0.4 15,242 - GFF3197 0.14 -0.1 15,242 - GFF3197 0.14 -0.4 15,242 - GFF3197 0.14 -0.4 15,242 - GFF3197 0.14 +0.9 15,242 - GFF3197 0.14 +0.2 15,242 - GFF3197 0.14 +0.1 15,242 - GFF3197 0.14 +1.1 15,242 - GFF3197 0.14 -0.3 15,355 + GFF3197 0.38 +1.2 15,356 - GFF3197 0.39 +1.7 15,445 + GFF3197 0.58 +1.8 15,869 + GFF3198 0.36 +0.9 16,161 - +0.3 16,315 + GFF3199 0.19 -0.3 16,315 + GFF3199 0.19 +0.2 16,316 - GFF3199 0.19 -0.1 16,316 - GFF3199 0.19 +0.2 16,336 + GFF3199 0.22 +0.1 16,337 - GFF3199 0.22 +0.2 16,337 - GFF3199 0.22 -0.1 16,337 - GFF3199 0.22 -0.3 16,339 + GFF3199 0.22 -0.1 16,340 - GFF3199 0.22 +0.1 16,340 - GFF3199 0.22 -0.6 16,340 - GFF3199 0.22 -1.4 16,555 + GFF3199 0.48 +0.3 16,555 + GFF3199 0.48 +0.8
Or see this region's nucleotide sequence