Strain Fitness in Variovorax sp. SCN45 around GFF3186

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3186 and GFF3187 are separated by 355 nucleotides GFF3186 - FIG01046500: hypothetical protein, at 353 to 1,687 GFF3186 GFF3187 - hypothetical protein, at 2,043 to 4,073 GFF3187 Position (kb) 0 1 2Strain fitness (log2 ratio) -2 -1 0 1 2at 0.108 kb on + strandat 0.108 kb on + strandat 0.109 kb on - strandat 0.151 kb on + strandat 0.151 kb on + strandat 0.152 kb on - strandat 0.209 kb on + strandat 0.209 kb on + strandat 0.230 kb on + strandat 0.230 kb on + strandat 0.231 kb on - strandat 0.231 kb on - strandat 0.231 kb on - strandat 0.231 kb on - strandat 0.302 kb on + strandat 0.303 kb on - strandat 0.309 kb on + strandat 0.309 kb on + strandat 0.310 kb on - strandat 0.344 kb on + strandat 0.345 kb on - strandat 0.355 kb on - strandat 0.355 kb on - strandat 0.434 kb on - strandat 0.440 kb on - strandat 0.440 kb on - strandat 0.456 kb on + strandat 0.494 kb on + strand, within GFF3186at 0.494 kb on + strand, within GFF3186at 0.494 kb on + strand, within GFF3186at 0.495 kb on - strand, within GFF3186at 0.495 kb on - strand, within GFF3186at 0.495 kb on - strand, within GFF3186at 0.516 kb on + strand, within GFF3186at 0.580 kb on + strand, within GFF3186at 0.581 kb on - strand, within GFF3186at 0.581 kb on - strand, within GFF3186at 0.581 kb on - strand, within GFF3186at 0.581 kb on - strand, within GFF3186at 0.581 kb on - strand, within GFF3186at 0.584 kb on + strand, within GFF3186at 0.585 kb on - strand, within GFF3186at 0.585 kb on - strand, within GFF3186at 0.606 kb on + strand, within GFF3186at 0.606 kb on + strand, within GFF3186at 0.607 kb on - strand, within GFF3186at 0.641 kb on + strand, within GFF3186at 0.641 kb on + strand, within GFF3186at 0.642 kb on - strand, within GFF3186at 0.642 kb on - strand, within GFF3186at 0.642 kb on - strand, within GFF3186at 0.662 kb on + strand, within GFF3186at 0.789 kb on + strand, within GFF3186at 0.814 kb on + strand, within GFF3186at 0.814 kb on + strand, within GFF3186at 0.814 kb on + strand, within GFF3186at 0.815 kb on - strand, within GFF3186at 0.816 kb on + strand, within GFF3186at 0.816 kb on + strand, within GFF3186at 0.816 kb on + strand, within GFF3186at 0.816 kb on + strand, within GFF3186at 0.816 kb on + strand, within GFF3186at 0.816 kb on + strand, within GFF3186at 0.816 kb on + strand, within GFF3186at 0.816 kb on + strand, within GFF3186at 0.816 kb on + strand, within GFF3186at 0.816 kb on + strand, within GFF3186at 0.816 kb on + strand, within GFF3186at 0.816 kb on + strand, within GFF3186at 0.817 kb on - strand, within GFF3186at 0.817 kb on - strand, within GFF3186at 0.817 kb on - strand, within GFF3186at 0.817 kb on - strand, within GFF3186at 0.817 kb on - strand, within GFF3186at 0.817 kb on - strand, within GFF3186at 0.817 kb on - strand, within GFF3186at 0.817 kb on - strand, within GFF3186at 0.817 kb on - strand, within GFF3186at 0.817 kb on - strand, within GFF3186at 0.817 kb on - strand, within GFF3186at 0.817 kb on - strand, within GFF3186at 0.828 kb on + strand, within GFF3186at 0.838 kb on + strand, within GFF3186at 0.839 kb on - strand, within GFF3186at 0.847 kb on - strand, within GFF3186at 0.897 kb on - strand, within GFF3186at 0.917 kb on + strand, within GFF3186at 0.917 kb on + strand, within GFF3186at 0.917 kb on + strand, within GFF3186at 0.918 kb on - strand, within GFF3186at 0.918 kb on - strand, within GFF3186at 0.924 kb on + strand, within GFF3186at 0.925 kb on - strand, within GFF3186at 0.925 kb on - strand, within GFF3186at 0.925 kb on - strand, within GFF3186at 1.066 kb on + strand, within GFF3186at 1.066 kb on + strand, within GFF3186at 1.067 kb on - strand, within GFF3186at 1.070 kb on + strand, within GFF3186at 1.070 kb on + strand, within GFF3186at 1.070 kb on + strand, within GFF3186at 1.070 kb on + strand, within GFF3186at 1.070 kb on + strand, within GFF3186at 1.070 kb on + strand, within GFF3186at 1.070 kb on + strand, within GFF3186at 1.070 kb on + strand, within GFF3186at 1.070 kb on + strand, within GFF3186at 1.071 kb on - strand, within GFF3186at 1.071 kb on - strand, within GFF3186at 1.071 kb on - strand, within GFF3186at 1.071 kb on - strand, within GFF3186at 1.071 kb on - strand, within GFF3186at 1.071 kb on - strand, within GFF3186at 1.071 kb on - strand, within GFF3186at 1.071 kb on - strand, within GFF3186at 1.071 kb on - strand, within GFF3186at 1.071 kb on - strand, within GFF3186at 1.112 kb on + strand, within GFF3186at 1.112 kb on + strand, within GFF3186at 1.148 kb on + strand, within GFF3186at 1.148 kb on + strand, within GFF3186at 1.149 kb on - strand, within GFF3186at 1.169 kb on + strand, within GFF3186at 1.223 kb on + strand, within GFF3186at 1.223 kb on + strand, within GFF3186at 1.223 kb on + strand, within GFF3186at 1.224 kb on - strand, within GFF3186at 1.224 kb on - strand, within GFF3186at 1.224 kb on - strand, within GFF3186at 1.305 kb on + strand, within GFF3186at 1.305 kb on + strand, within GFF3186at 1.305 kb on + strand, within GFF3186at 1.306 kb on - strand, within GFF3186at 1.306 kb on - strand, within GFF3186at 1.332 kb on + strand, within GFF3186at 1.332 kb on + strand, within GFF3186at 1.332 kb on + strand, within GFF3186at 1.332 kb on + strand, within GFF3186at 1.332 kb on + strand, within GFF3186at 1.332 kb on + strand, within GFF3186at 1.333 kb on - strand, within GFF3186at 1.333 kb on - strand, within GFF3186at 1.547 kb on + strand, within GFF3186at 1.547 kb on + strand, within GFF3186at 1.547 kb on + strand, within GFF3186at 1.547 kb on + strand, within GFF3186at 1.547 kb on + strand, within GFF3186at 1.547 kb on + strand, within GFF3186at 1.548 kb on - strand, within GFF3186at 1.548 kb on - strand, within GFF3186at 1.618 kb on + strandat 1.688 kb on - strandat 1.730 kb on + strandat 1.730 kb on + strandat 1.730 kb on + strandat 1.731 kb on - strandat 1.770 kb on + strandat 1.771 kb on - strandat 1.771 kb on - strandat 1.771 kb on - strandat 1.797 kb on + strandat 1.798 kb on - strandat 1.798 kb on - strandat 1.910 kb on - strandat 1.975 kb on + strandat 1.975 kb on + strandat 1.975 kb on + strandat 1.976 kb on - strandat 1.976 kb on - strandat 2.094 kb on + strandat 2.095 kb on - strandat 2.119 kb on + strandat 2.119 kb on + strandat 2.119 kb on + strandat 2.119 kb on + strandat 2.119 kb on + strandat 2.119 kb on + strandat 2.120 kb on - strandat 2.120 kb on - strandat 2.183 kb on + strandat 2.184 kb on - strandat 2.184 kb on - strandat 2.250 kb on - strand, within GFF3187at 2.250 kb on - strand, within GFF3187at 2.256 kb on - strand, within GFF3187at 2.420 kb on + strand, within GFF3187at 2.420 kb on + strand, within GFF3187at 2.420 kb on + strand, within GFF3187at 2.421 kb on - strand, within GFF3187at 2.421 kb on - strand, within GFF3187at 2.459 kb on - strand, within GFF3187at 2.459 kb on - strand, within GFF3187at 2.491 kb on + strand, within GFF3187at 2.491 kb on + strand, within GFF3187at 2.491 kb on + strand, within GFF3187at 2.492 kb on - strand, within GFF3187at 2.492 kb on - strand, within GFF3187at 2.512 kb on + strand, within GFF3187at 2.563 kb on + strand, within GFF3187at 2.564 kb on - strand, within GFF3187at 2.564 kb on - strand, within GFF3187at 2.662 kb on + strand, within GFF3187at 2.663 kb on - strand, within GFF3187at 2.663 kb on - strand, within GFF3187

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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108 + -0.1
108 + -1.1
109 - -0.9
151 + +0.1
151 + -0.8
152 - -0.3
209 + +0.4
209 + -0.1
230 + -0.2
230 + -0.1
231 - -1.1
231 - +0.4
231 - -0.5
231 - -1.4
302 + +0.2
303 - -0.4
309 + -0.3
309 + -0.4
310 - -1.1
344 + -0.4
345 - +0.7
355 - -0.3
355 - -0.1
434 - +0.2
440 - -2.7
440 - -0.2
456 + -0.4
494 + GFF3186 0.11 -0.2
494 + GFF3186 0.11 -1.3
494 + GFF3186 0.11 -0.9
495 - GFF3186 0.11 -0.6
495 - GFF3186 0.11 -0.2
495 - GFF3186 0.11 -1.2
516 + GFF3186 0.12 -0.4
580 + GFF3186 0.17 -0.7
581 - GFF3186 0.17 -1.6
581 - GFF3186 0.17 -1.1
581 - GFF3186 0.17 +2.7
581 - GFF3186 0.17 -0.0
581 - GFF3186 0.17 +0.1
584 + GFF3186 0.17 -0.7
585 - GFF3186 0.17 -1.4
585 - GFF3186 0.17 -0.9
606 + GFF3186 0.19 -0.3
606 + GFF3186 0.19 +0.9
607 - GFF3186 0.19 -0.5
641 + GFF3186 0.22 +0.4
641 + GFF3186 0.22 -1.1
642 - GFF3186 0.22 +1.6
642 - GFF3186 0.22 +1.5
642 - GFF3186 0.22 -0.4
662 + GFF3186 0.23 -0.6
789 + GFF3186 0.33 -1.4
814 + GFF3186 0.35 -0.7
814 + GFF3186 0.35 -1.8
814 + GFF3186 0.35 -0.3
815 - GFF3186 0.35 +0.0
816 + GFF3186 0.35 -0.1
816 + GFF3186 0.35 -0.1
816 + GFF3186 0.35 -0.3
816 + GFF3186 0.35 -1.8
816 + GFF3186 0.35 -0.5
816 + GFF3186 0.35 +0.9
816 + GFF3186 0.35 +0.1
816 + GFF3186 0.35 +0.2
816 + GFF3186 0.35 -2.1
816 + GFF3186 0.35 -0.3
816 + GFF3186 0.35 +0.4
816 + GFF3186 0.35 +0.2
817 - GFF3186 0.35 -0.1
817 - GFF3186 0.35 -0.5
817 - GFF3186 0.35 -0.7
817 - GFF3186 0.35 -0.1
817 - GFF3186 0.35 -1.0
817 - GFF3186 0.35 -0.4
817 - GFF3186 0.35 +0.6
817 - GFF3186 0.35 -0.7
817 - GFF3186 0.35 -0.5
817 - GFF3186 0.35 -0.1
817 - GFF3186 0.35 -0.3
817 - GFF3186 0.35 +0.4
828 + GFF3186 0.36 +1.1
838 + GFF3186 0.36 -0.6
839 - GFF3186 0.36 +0.0
847 - GFF3186 0.37 -0.9
897 - GFF3186 0.41 -0.5
917 + GFF3186 0.42 +0.4
917 + GFF3186 0.42 -0.9
917 + GFF3186 0.42 -0.4
918 - GFF3186 0.42 -0.1
918 - GFF3186 0.42 -0.0
924 + GFF3186 0.43 -1.2
925 - GFF3186 0.43 -0.7
925 - GFF3186 0.43 -0.8
925 - GFF3186 0.43 +1.2
1,066 + GFF3186 0.53 -1.1
1,066 + GFF3186 0.53 -0.2
1,067 - GFF3186 0.53 -0.6
1,070 + GFF3186 0.54 -0.5
1,070 + GFF3186 0.54 -0.4
1,070 + GFF3186 0.54 -0.4
1,070 + GFF3186 0.54 -0.4
1,070 + GFF3186 0.54 -0.3
1,070 + GFF3186 0.54 -0.2
1,070 + GFF3186 0.54 -1.0
1,070 + GFF3186 0.54 +0.8
1,070 + GFF3186 0.54 -0.9
1,071 - GFF3186 0.54 -0.4
1,071 - GFF3186 0.54 +0.5
1,071 - GFF3186 0.54 -1.2
1,071 - GFF3186 0.54 +2.3
1,071 - GFF3186 0.54 -0.2
1,071 - GFF3186 0.54 +0.2
1,071 - GFF3186 0.54 +0.0
1,071 - GFF3186 0.54 -0.6
1,071 - GFF3186 0.54 +0.4
1,071 - GFF3186 0.54 -0.4
1,112 + GFF3186 0.57 +0.4
1,112 + GFF3186 0.57 -0.1
1,148 + GFF3186 0.60 -0.2
1,148 + GFF3186 0.60 -0.2
1,149 - GFF3186 0.60 -1.2
1,169 + GFF3186 0.61 +0.1
1,223 + GFF3186 0.65 -2.5
1,223 + GFF3186 0.65 -0.1
1,223 + GFF3186 0.65 -0.5
1,224 - GFF3186 0.65 -0.1
1,224 - GFF3186 0.65 -1.2
1,224 - GFF3186 0.65 +0.4
1,305 + GFF3186 0.71 -0.2
1,305 + GFF3186 0.71 +1.4
1,305 + GFF3186 0.71 +1.5
1,306 - GFF3186 0.71 -1.1
1,306 - GFF3186 0.71 -0.0
1,332 + GFF3186 0.73 +0.4
1,332 + GFF3186 0.73 -0.2
1,332 + GFF3186 0.73 +0.3
1,332 + GFF3186 0.73 -0.1
1,332 + GFF3186 0.73 -0.5
1,332 + GFF3186 0.73 -0.2
1,333 - GFF3186 0.73 +0.2
1,333 - GFF3186 0.73 -1.2
1,547 + GFF3186 0.89 -0.5
1,547 + GFF3186 0.89 +0.6
1,547 + GFF3186 0.89 +1.2
1,547 + GFF3186 0.89 -0.7
1,547 + GFF3186 0.89 -0.8
1,547 + GFF3186 0.89 -1.1
1,548 - GFF3186 0.90 +0.6
1,548 - GFF3186 0.90 -0.2
1,618 + -1.0
1,688 - -0.4
1,730 + -0.8
1,730 + +0.6
1,730 + -0.4
1,731 - +0.1
1,770 + -0.5
1,771 - -0.9
1,771 - -1.6
1,771 - -0.8
1,797 + -0.6
1,798 - -0.2
1,798 - +1.3
1,910 - +0.9
1,975 + -0.0
1,975 + -0.1
1,975 + +0.3
1,976 - -0.6
1,976 - -0.3
2,094 + -0.3
2,095 - -0.1
2,119 + +0.4
2,119 + +0.0
2,119 + +0.9
2,119 + +0.5
2,119 + -0.6
2,119 + -0.3
2,120 - -0.6
2,120 - -0.4
2,183 + +0.5
2,184 - -0.4
2,184 - -0.1
2,250 - GFF3187 0.10 +0.0
2,250 - GFF3187 0.10 -0.4
2,256 - GFF3187 0.10 -0.1
2,420 + GFF3187 0.19 -0.2
2,420 + GFF3187 0.19 +0.4
2,420 + GFF3187 0.19 -0.6
2,421 - GFF3187 0.19 -0.7
2,421 - GFF3187 0.19 -0.8
2,459 - GFF3187 0.20 +1.9
2,459 - GFF3187 0.20 -0.6
2,491 + GFF3187 0.22 -0.5
2,491 + GFF3187 0.22 +0.4
2,491 + GFF3187 0.22 -0.3
2,492 - GFF3187 0.22 +0.9
2,492 - GFF3187 0.22 -0.3
2,512 + GFF3187 0.23 +0.7
2,563 + GFF3187 0.26 +0.7
2,564 - GFF3187 0.26 -0.4
2,564 - GFF3187 0.26 -0.6
2,662 + GFF3187 0.30 -0.9
2,663 - GFF3187 0.31 -0.3
2,663 - GFF3187 0.31 -0.8

Or see this region's nucleotide sequence