Strain Fitness in Variovorax sp. SCN45 around GFF3127

Experiment: phage_bap4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF3124 and GFF3125 are separated by 4 nucleotidesGFF3125 and GFF3126 are separated by 63 nucleotidesGFF3126 and GFF3127 are separated by 149 nucleotidesGFF3127 and GFF3128 overlap by 4 nucleotides GFF3124 - no description, at 552,336 to 552,674 GFF3124 GFF3125 - no description, at 552,679 to 553,125 GFF3125 GFF3126 - no description, at 553,189 to 553,476 GFF3126 GFF3127 - no description, at 553,626 to 554,162 GFF3127 GFF3128 - T6SS PAAR-repeat protein / RhaS protein, at 554,159 to 558,616 GFF3128 Position (kb) 553 554 555Strain fitness (log2 ratio) -2 -1 0 1 2at 552.699 kb on - strandat 552.881 kb on + strand, within GFF3125at 552.920 kb on + strand, within GFF3125at 552.921 kb on - strand, within GFF3125at 552.921 kb on - strand, within GFF3125at 552.921 kb on - strand, within GFF3125at 552.939 kb on - strand, within GFF3125at 553.279 kb on - strand, within GFF3126at 553.365 kb on - strand, within GFF3126at 553.502 kb on + strandat 553.502 kb on + strandat 553.503 kb on - strandat 553.503 kb on - strandat 553.503 kb on - strandat 553.503 kb on - strandat 553.503 kb on - strandat 553.503 kb on - strandat 553.503 kb on - strandat 553.503 kb on - strandat 553.618 kb on + strandat 553.657 kb on + strandat 553.657 kb on + strandat 553.657 kb on + strandat 553.658 kb on - strandat 553.658 kb on - strandat 553.658 kb on - strandat 553.678 kb on + strandat 553.678 kb on + strandat 553.679 kb on - strandat 553.679 kb on - strandat 553.679 kb on - strandat 553.680 kb on + strand, within GFF3127at 553.680 kb on + strand, within GFF3127at 553.680 kb on + strand, within GFF3127at 553.758 kb on + strand, within GFF3127at 553.758 kb on + strand, within GFF3127at 553.783 kb on + strand, within GFF3127at 553.843 kb on - strand, within GFF3127at 553.843 kb on - strand, within GFF3127at 553.876 kb on + strand, within GFF3127at 553.877 kb on - strand, within GFF3127at 553.916 kb on + strand, within GFF3127at 553.945 kb on - strand, within GFF3127at 554.300 kb on + strandat 554.300 kb on + strandat 554.300 kb on + strandat 554.301 kb on - strandat 554.302 kb on + strandat 554.347 kb on - strandat 554.444 kb on + strandat 554.444 kb on + strandat 554.445 kb on - strandat 554.506 kb on - strandat 554.551 kb on - strandat 554.551 kb on - strandat 554.622 kb on + strand, within GFF3128at 554.623 kb on - strand, within GFF3128at 554.623 kb on - strand, within GFF3128at 554.640 kb on + strand, within GFF3128at 554.640 kb on + strand, within GFF3128at 554.641 kb on - strand, within GFF3128at 554.641 kb on - strand, within GFF3128at 554.641 kb on - strand, within GFF3128at 554.641 kb on - strand, within GFF3128at 554.641 kb on - strand, within GFF3128at 554.668 kb on - strand, within GFF3128at 554.790 kb on + strand, within GFF3128at 554.791 kb on - strand, within GFF3128at 554.791 kb on - strand, within GFF3128at 554.949 kb on + strand, within GFF3128at 554.950 kb on - strand, within GFF3128at 554.955 kb on + strand, within GFF3128at 554.955 kb on + strand, within GFF3128at 554.955 kb on + strand, within GFF3128at 554.955 kb on + strand, within GFF3128at 554.955 kb on + strand, within GFF3128at 554.955 kb on + strand, within GFF3128at 554.955 kb on + strand, within GFF3128at 554.955 kb on + strand, within GFF3128at 554.956 kb on - strand, within GFF3128at 554.956 kb on - strand, within GFF3128

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
remove
552,699 - +0.3
552,881 + GFF3125 0.45 -0.0
552,920 + GFF3125 0.54 -1.4
552,921 - GFF3125 0.54 -0.2
552,921 - GFF3125 0.54 +0.2
552,921 - GFF3125 0.54 -1.2
552,939 - GFF3125 0.58 +0.1
553,279 - GFF3126 0.31 -0.2
553,365 - GFF3126 0.61 -0.4
553,502 + +0.2
553,502 + -0.2
553,503 - +0.0
553,503 - +0.3
553,503 - +0.8
553,503 - -0.2
553,503 - -1.3
553,503 - +1.2
553,503 - -0.1
553,503 - -0.8
553,618 + -0.7
553,657 + -0.1
553,657 + -0.2
553,657 + +0.4
553,658 - -0.4
553,658 - -0.0
553,658 - +0.3
553,678 + -0.0
553,678 + +1.5
553,679 - -0.8
553,679 - +0.8
553,679 - +2.0
553,680 + GFF3127 0.10 -0.3
553,680 + GFF3127 0.10 +0.7
553,680 + GFF3127 0.10 +0.6
553,758 + GFF3127 0.25 +0.3
553,758 + GFF3127 0.25 -0.5
553,783 + GFF3127 0.29 +0.4
553,843 - GFF3127 0.40 +1.4
553,843 - GFF3127 0.40 -0.5
553,876 + GFF3127 0.47 -0.1
553,877 - GFF3127 0.47 +0.4
553,916 + GFF3127 0.54 +0.1
553,945 - GFF3127 0.59 -2.4
554,300 + -1.1
554,300 + +0.3
554,300 + +0.0
554,301 - +0.0
554,302 + +1.0
554,347 - -0.3
554,444 + -0.6
554,444 + +0.4
554,445 - -0.0
554,506 - -0.7
554,551 - +0.8
554,551 - +0.4
554,622 + GFF3128 0.10 +0.0
554,623 - GFF3128 0.10 -0.5
554,623 - GFF3128 0.10 +0.4
554,640 + GFF3128 0.11 +0.7
554,640 + GFF3128 0.11 -0.6
554,641 - GFF3128 0.11 +1.3
554,641 - GFF3128 0.11 -0.2
554,641 - GFF3128 0.11 +0.1
554,641 - GFF3128 0.11 +0.2
554,641 - GFF3128 0.11 +0.2
554,668 - GFF3128 0.11 -0.4
554,790 + GFF3128 0.14 +0.8
554,791 - GFF3128 0.14 -1.2
554,791 - GFF3128 0.14 +0.2
554,949 + GFF3128 0.18 -0.1
554,950 - GFF3128 0.18 -0.8
554,955 + GFF3128 0.18 -0.5
554,955 + GFF3128 0.18 +0.3
554,955 + GFF3128 0.18 +0.1
554,955 + GFF3128 0.18 -0.0
554,955 + GFF3128 0.18 +0.4
554,955 + GFF3128 0.18 -0.3
554,955 + GFF3128 0.18 -0.4
554,955 + GFF3128 0.18 -0.1
554,956 - GFF3128 0.18 -0.5
554,956 - GFF3128 0.18 +0.6

Or see this region's nucleotide sequence