Strain Fitness in Variovorax sp. SCN45 around GFF3112

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3110 and GFF3111 are separated by 16 nucleotidesGFF3111 and GFF3112 are separated by 34 nucleotidesGFF3112 and GFF3113 are separated by 34 nucleotidesGFF3113 and GFF3114 overlap by 8 nucleotides GFF3110 - Nitrilotriacetate monooxygenase component A (EC 1.14.13.-), at 537,296 to 538,645 GFF3110 GFF3111 - hypothetical protein, at 538,662 to 539,012 GFF3111 GFF3112 - Methionine ABC transporter substrate-binding protein, at 539,047 to 539,883 GFF3112 GFF3113 - Methionine ABC transporter permease protein, at 539,918 to 540,580 GFF3113 GFF3114 - Methionine ABC transporter ATP-binding protein, at 540,573 to 541,460 GFF3114 Position (kb) 539 540Strain fitness (log2 ratio) -2 -1 0 1 2 3at 538.047 kb on - strand, within GFF3110at 538.196 kb on + strand, within GFF3110at 538.196 kb on + strand, within GFF3110at 538.197 kb on - strand, within GFF3110at 538.197 kb on - strand, within GFF3110at 538.349 kb on + strand, within GFF3110at 538.350 kb on - strand, within GFF3110at 538.568 kb on + strandat 538.568 kb on + strandat 538.838 kb on - strand, within GFF3111at 538.838 kb on - strand, within GFF3111at 538.838 kb on - strand, within GFF3111at 538.838 kb on - strand, within GFF3111at 538.838 kb on - strand, within GFF3111at 538.838 kb on - strand, within GFF3111at 538.850 kb on + strand, within GFF3111at 538.858 kb on + strand, within GFF3111at 538.858 kb on + strand, within GFF3111at 538.858 kb on + strand, within GFF3111at 538.858 kb on + strand, within GFF3111at 538.858 kb on + strand, within GFF3111at 538.858 kb on + strand, within GFF3111at 538.858 kb on + strand, within GFF3111at 538.858 kb on + strand, within GFF3111at 538.858 kb on + strand, within GFF3111at 538.858 kb on + strand, within GFF3111at 538.859 kb on - strand, within GFF3111at 538.859 kb on - strand, within GFF3111at 538.859 kb on - strand, within GFF3111at 538.859 kb on - strand, within GFF3111at 538.859 kb on - strand, within GFF3111at 538.859 kb on - strand, within GFF3111at 538.897 kb on + strand, within GFF3111at 538.995 kb on + strandat 539.048 kb on + strandat 539.048 kb on + strandat 539.048 kb on + strandat 539.049 kb on - strandat 539.049 kb on - strandat 539.072 kb on + strandat 539.189 kb on + strand, within GFF3112at 539.189 kb on + strand, within GFF3112at 539.189 kb on + strand, within GFF3112at 539.189 kb on + strand, within GFF3112at 539.189 kb on + strand, within GFF3112at 539.190 kb on - strand, within GFF3112at 539.190 kb on - strand, within GFF3112at 539.190 kb on - strand, within GFF3112at 539.190 kb on - strand, within GFF3112at 539.190 kb on - strand, within GFF3112at 539.190 kb on - strand, within GFF3112at 539.192 kb on + strand, within GFF3112at 539.192 kb on + strand, within GFF3112at 539.192 kb on + strand, within GFF3112at 539.193 kb on - strand, within GFF3112at 539.193 kb on - strand, within GFF3112at 539.193 kb on - strand, within GFF3112at 539.193 kb on - strand, within GFF3112at 539.193 kb on - strand, within GFF3112at 539.273 kb on + strand, within GFF3112at 539.273 kb on + strand, within GFF3112at 539.514 kb on - strand, within GFF3112at 539.514 kb on - strand, within GFF3112at 539.591 kb on + strand, within GFF3112at 539.592 kb on - strand, within GFF3112at 539.657 kb on + strand, within GFF3112at 539.658 kb on - strand, within GFF3112at 539.658 kb on - strand, within GFF3112at 539.658 kb on - strand, within GFF3112at 539.687 kb on + strand, within GFF3112at 539.687 kb on + strand, within GFF3112at 539.687 kb on + strand, within GFF3112at 539.687 kb on + strand, within GFF3112at 539.688 kb on - strand, within GFF3112at 539.688 kb on - strand, within GFF3112at 539.688 kb on - strand, within GFF3112at 539.898 kb on - strandat 539.898 kb on - strandat 539.898 kb on - strandat 539.898 kb on - strandat 539.901 kb on + strandat 539.901 kb on + strandat 539.901 kb on + strandat 539.901 kb on + strandat 539.902 kb on - strandat 539.902 kb on - strandat 539.902 kb on - strandat 539.902 kb on - strandat 539.972 kb on + strandat 539.972 kb on + strandat 539.973 kb on - strandat 539.973 kb on - strandat 540.027 kb on + strand, within GFF3113at 540.027 kb on + strand, within GFF3113at 540.028 kb on - strand, within GFF3113at 540.028 kb on - strand, within GFF3113at 540.030 kb on + strand, within GFF3113at 540.031 kb on - strand, within GFF3113at 540.093 kb on + strand, within GFF3113at 540.093 kb on + strand, within GFF3113at 540.094 kb on - strand, within GFF3113at 540.264 kb on + strand, within GFF3113at 540.264 kb on + strand, within GFF3113at 540.265 kb on - strand, within GFF3113at 540.265 kb on - strand, within GFF3113at 540.265 kb on - strand, within GFF3113at 540.580 kb on + strandat 540.580 kb on + strandat 540.581 kb on - strandat 540.581 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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538,047 - GFF3110 0.56 -0.6
538,196 + GFF3110 0.67 -0.5
538,196 + GFF3110 0.67 +0.0
538,197 - GFF3110 0.67 -0.0
538,197 - GFF3110 0.67 +0.2
538,349 + GFF3110 0.78 -1.4
538,350 - GFF3110 0.78 -0.0
538,568 + +0.2
538,568 + -0.6
538,838 - GFF3111 0.50 +1.0
538,838 - GFF3111 0.50 -0.4
538,838 - GFF3111 0.50 +0.8
538,838 - GFF3111 0.50 -1.1
538,838 - GFF3111 0.50 +1.4
538,838 - GFF3111 0.50 -0.3
538,850 + GFF3111 0.54 +0.2
538,858 + GFF3111 0.56 -0.6
538,858 + GFF3111 0.56 -1.0
538,858 + GFF3111 0.56 -0.7
538,858 + GFF3111 0.56 -0.9
538,858 + GFF3111 0.56 -0.5
538,858 + GFF3111 0.56 -0.7
538,858 + GFF3111 0.56 -0.1
538,858 + GFF3111 0.56 +0.2
538,858 + GFF3111 0.56 -1.0
538,858 + GFF3111 0.56 +0.8
538,859 - GFF3111 0.56 +0.7
538,859 - GFF3111 0.56 +1.5
538,859 - GFF3111 0.56 -1.2
538,859 - GFF3111 0.56 +0.8
538,859 - GFF3111 0.56 +0.0
538,859 - GFF3111 0.56 -0.4
538,897 + GFF3111 0.67 -0.0
538,995 + -0.3
539,048 + -0.8
539,048 + -0.2
539,048 + -0.3
539,049 - -0.5
539,049 - +1.2
539,072 + +1.0
539,189 + GFF3112 0.17 -1.1
539,189 + GFF3112 0.17 +0.1
539,189 + GFF3112 0.17 +1.0
539,189 + GFF3112 0.17 -0.6
539,189 + GFF3112 0.17 -0.6
539,190 - GFF3112 0.17 +0.4
539,190 - GFF3112 0.17 +0.4
539,190 - GFF3112 0.17 +3.4
539,190 - GFF3112 0.17 -0.4
539,190 - GFF3112 0.17 +0.2
539,190 - GFF3112 0.17 +1.3
539,192 + GFF3112 0.17 -0.3
539,192 + GFF3112 0.17 -0.1
539,192 + GFF3112 0.17 -1.7
539,193 - GFF3112 0.17 -0.5
539,193 - GFF3112 0.17 -0.0
539,193 - GFF3112 0.17 -0.2
539,193 - GFF3112 0.17 +3.4
539,193 - GFF3112 0.17 -0.2
539,273 + GFF3112 0.27 -0.3
539,273 + GFF3112 0.27 -0.4
539,514 - GFF3112 0.56 -0.1
539,514 - GFF3112 0.56 +0.3
539,591 + GFF3112 0.65 +0.0
539,592 - GFF3112 0.65 +0.2
539,657 + GFF3112 0.73 +1.8
539,658 - GFF3112 0.73 -0.6
539,658 - GFF3112 0.73 -1.6
539,658 - GFF3112 0.73 -0.1
539,687 + GFF3112 0.76 +0.4
539,687 + GFF3112 0.76 -2.0
539,687 + GFF3112 0.76 +0.0
539,687 + GFF3112 0.76 -0.2
539,688 - GFF3112 0.77 +0.8
539,688 - GFF3112 0.77 -1.1
539,688 - GFF3112 0.77 -0.2
539,898 - +0.2
539,898 - +0.2
539,898 - -0.8
539,898 - +0.9
539,901 + +0.2
539,901 + -0.4
539,901 + -0.5
539,901 + -0.1
539,902 - +0.6
539,902 - -0.3
539,902 - -1.7
539,902 - +0.2
539,972 + -0.2
539,972 + -0.4
539,973 - +0.4
539,973 - +0.4
540,027 + GFF3113 0.16 -1.0
540,027 + GFF3113 0.16 -0.9
540,028 - GFF3113 0.17 -0.4
540,028 - GFF3113 0.17 -0.2
540,030 + GFF3113 0.17 -0.3
540,031 - GFF3113 0.17 +0.0
540,093 + GFF3113 0.26 -0.2
540,093 + GFF3113 0.26 +0.3
540,094 - GFF3113 0.27 +1.2
540,264 + GFF3113 0.52 -0.2
540,264 + GFF3113 0.52 +0.2
540,265 - GFF3113 0.52 -0.4
540,265 - GFF3113 0.52 -0.9
540,265 - GFF3113 0.52 -0.3
540,580 + -0.5
540,580 + -0.5
540,581 - -0.6
540,581 - -1.0

Or see this region's nucleotide sequence