Strain Fitness in Variovorax sp. SCN45 around GFF3077

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3075 and GFF3076 are separated by 148 nucleotidesGFF3076 and GFF3077 are separated by 61 nucleotidesGFF3077 and GFF3078 are separated by 52 nucleotides GFF3075 - Surface antigen, at 507,790 to 508,740 GFF3075 GFF3076 - SSU rRNA pseudouridine(516) synthase (EC 5.4.99.19), at 508,889 to 509,638 GFF3076 GFF3077 - Gamma-glutamyltranspeptidase (EC 2.3.2.2) @ Glutathione hydrolase (EC 3.4.19.13), at 509,700 to 511,436 GFF3077 GFF3078 - SAM-dependent methyltransferase, at 511,489 to 513,090 GFF3078 Position (kb) 509 510 511 512Strain fitness (log2 ratio) -2 -1 0 1 2at 508.826 kb on - strandat 508.839 kb on + strandat 508.839 kb on + strandat 508.839 kb on + strandat 508.839 kb on + strandat 508.839 kb on + strandat 508.840 kb on - strandat 508.840 kb on - strandat 508.890 kb on + strandat 509.067 kb on + strand, within GFF3076at 509.067 kb on + strand, within GFF3076at 509.067 kb on + strand, within GFF3076at 509.067 kb on + strand, within GFF3076at 509.068 kb on - strand, within GFF3076at 509.068 kb on - strand, within GFF3076at 509.068 kb on - strand, within GFF3076at 509.221 kb on - strand, within GFF3076at 509.221 kb on - strand, within GFF3076at 509.221 kb on - strand, within GFF3076at 509.388 kb on + strand, within GFF3076at 509.388 kb on + strand, within GFF3076at 509.388 kb on + strand, within GFF3076at 509.388 kb on + strand, within GFF3076at 509.389 kb on - strand, within GFF3076at 509.389 kb on - strand, within GFF3076at 509.401 kb on - strand, within GFF3076at 509.401 kb on - strand, within GFF3076at 509.401 kb on - strand, within GFF3076at 509.454 kb on + strand, within GFF3076at 509.454 kb on + strand, within GFF3076at 509.455 kb on - strand, within GFF3076at 509.455 kb on - strand, within GFF3076at 509.455 kb on - strand, within GFF3076at 509.470 kb on - strand, within GFF3076at 509.496 kb on + strand, within GFF3076at 509.496 kb on + strand, within GFF3076at 509.497 kb on - strand, within GFF3076at 509.497 kb on - strand, within GFF3076at 509.497 kb on - strand, within GFF3076at 509.497 kb on - strand, within GFF3076at 509.497 kb on - strand, within GFF3076at 509.616 kb on + strandat 509.617 kb on - strandat 509.617 kb on - strandat 509.617 kb on - strandat 509.617 kb on - strandat 509.617 kb on - strandat 509.685 kb on + strandat 509.685 kb on + strandat 509.686 kb on - strandat 509.686 kb on - strandat 509.686 kb on - strandat 509.686 kb on - strandat 509.704 kb on + strandat 509.749 kb on + strandat 509.890 kb on + strand, within GFF3077at 509.890 kb on + strand, within GFF3077at 509.890 kb on + strand, within GFF3077at 509.891 kb on - strand, within GFF3077at 509.891 kb on - strand, within GFF3077at 509.971 kb on + strand, within GFF3077at 510.250 kb on + strand, within GFF3077at 510.250 kb on + strand, within GFF3077at 510.251 kb on - strand, within GFF3077at 510.251 kb on - strand, within GFF3077at 510.251 kb on - strand, within GFF3077at 510.292 kb on + strand, within GFF3077at 510.293 kb on - strand, within GFF3077at 510.293 kb on - strand, within GFF3077at 510.451 kb on + strand, within GFF3077at 510.451 kb on + strand, within GFF3077at 510.451 kb on + strand, within GFF3077at 510.451 kb on + strand, within GFF3077at 510.451 kb on + strand, within GFF3077at 510.451 kb on + strand, within GFF3077at 510.452 kb on - strand, within GFF3077at 510.452 kb on - strand, within GFF3077at 510.452 kb on - strand, within GFF3077at 510.469 kb on + strand, within GFF3077at 510.469 kb on + strand, within GFF3077at 510.469 kb on + strand, within GFF3077at 510.469 kb on + strand, within GFF3077at 510.469 kb on + strand, within GFF3077at 510.470 kb on - strand, within GFF3077at 510.470 kb on - strand, within GFF3077at 510.520 kb on + strand, within GFF3077at 510.521 kb on - strand, within GFF3077at 510.626 kb on - strand, within GFF3077at 510.626 kb on - strand, within GFF3077at 510.661 kb on + strand, within GFF3077at 510.661 kb on + strand, within GFF3077at 510.661 kb on + strand, within GFF3077at 510.661 kb on + strand, within GFF3077at 510.662 kb on - strand, within GFF3077at 510.662 kb on - strand, within GFF3077at 510.662 kb on - strand, within GFF3077at 510.742 kb on + strand, within GFF3077at 510.742 kb on + strand, within GFF3077at 510.742 kb on + strand, within GFF3077at 510.742 kb on + strand, within GFF3077at 510.742 kb on + strand, within GFF3077at 510.742 kb on + strand, within GFF3077at 510.742 kb on + strand, within GFF3077at 510.743 kb on - strand, within GFF3077at 510.743 kb on - strand, within GFF3077at 510.743 kb on - strand, within GFF3077at 510.743 kb on - strand, within GFF3077at 510.743 kb on - strand, within GFF3077at 510.743 kb on - strand, within GFF3077at 510.743 kb on - strand, within GFF3077at 510.823 kb on + strand, within GFF3077at 510.823 kb on + strand, within GFF3077at 510.823 kb on + strand, within GFF3077at 510.823 kb on + strand, within GFF3077at 510.823 kb on + strand, within GFF3077at 510.824 kb on - strand, within GFF3077at 510.985 kb on + strand, within GFF3077at 510.986 kb on - strand, within GFF3077at 510.986 kb on - strand, within GFF3077at 510.986 kb on - strand, within GFF3077at 510.986 kb on - strand, within GFF3077at 510.986 kb on - strand, within GFF3077at 510.986 kb on - strand, within GFF3077at 510.986 kb on - strand, within GFF3077at 511.000 kb on + strand, within GFF3077at 511.001 kb on - strand, within GFF3077at 511.001 kb on - strand, within GFF3077at 511.001 kb on - strand, within GFF3077at 511.001 kb on - strand, within GFF3077at 511.001 kb on - strand, within GFF3077at 511.090 kb on + strand, within GFF3077at 511.090 kb on + strand, within GFF3077at 511.090 kb on + strand, within GFF3077at 511.090 kb on + strand, within GFF3077at 511.090 kb on + strand, within GFF3077at 511.090 kb on + strand, within GFF3077at 511.090 kb on + strand, within GFF3077at 511.091 kb on - strand, within GFF3077at 511.091 kb on - strand, within GFF3077at 511.091 kb on - strand, within GFF3077at 511.091 kb on - strand, within GFF3077at 511.091 kb on - strand, within GFF3077at 511.091 kb on - strand, within GFF3077at 511.091 kb on - strand, within GFF3077at 511.091 kb on - strand, within GFF3077at 511.091 kb on - strand, within GFF3077at 511.091 kb on - strand, within GFF3077at 511.091 kb on - strand, within GFF3077at 511.091 kb on - strand, within GFF3077at 511.207 kb on + strand, within GFF3077at 511.208 kb on - strand, within GFF3077at 511.208 kb on - strand, within GFF3077at 511.226 kb on - strand, within GFF3077at 511.453 kb on + strandat 511.453 kb on + strandat 511.453 kb on + strandat 511.454 kb on - strandat 511.454 kb on - strandat 511.454 kb on - strandat 511.454 kb on - strandat 511.454 kb on - strandat 511.937 kb on - strand, within GFF3078at 511.937 kb on - strand, within GFF3078at 511.937 kb on - strand, within GFF3078at 512.228 kb on + strand, within GFF3078at 512.228 kb on + strand, within GFF3078at 512.228 kb on + strand, within GFF3078at 512.228 kb on + strand, within GFF3078at 512.229 kb on - strand, within GFF3078at 512.229 kb on - strand, within GFF3078at 512.229 kb on - strand, within GFF3078at 512.229 kb on - strand, within GFF3078at 512.295 kb on - strand, within GFF3078at 512.295 kb on - strand, within GFF3078at 512.337 kb on - strand, within GFF3078at 512.381 kb on + strand, within GFF3078at 512.381 kb on + strand, within GFF3078at 512.381 kb on + strand, within GFF3078at 512.381 kb on + strand, within GFF3078at 512.382 kb on - strand, within GFF3078at 512.382 kb on - strand, within GFF3078at 512.382 kb on - strand, within GFF3078at 512.382 kb on - strand, within GFF3078at 512.423 kb on + strand, within GFF3078at 512.423 kb on + strand, within GFF3078at 512.424 kb on - strand, within GFF3078at 512.424 kb on - strand, within GFF3078

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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508,826 - +0.3
508,839 + -0.7
508,839 + -0.8
508,839 + -0.4
508,839 + -0.0
508,839 + -1.0
508,840 - -1.8
508,840 - -0.9
508,890 + -0.5
509,067 + GFF3076 0.24 +0.4
509,067 + GFF3076 0.24 -0.2
509,067 + GFF3076 0.24 +0.1
509,067 + GFF3076 0.24 -2.7
509,068 - GFF3076 0.24 +1.2
509,068 - GFF3076 0.24 +0.4
509,068 - GFF3076 0.24 +1.5
509,221 - GFF3076 0.44 -0.4
509,221 - GFF3076 0.44 +0.5
509,221 - GFF3076 0.44 -0.1
509,388 + GFF3076 0.67 -0.3
509,388 + GFF3076 0.67 -0.3
509,388 + GFF3076 0.67 -1.4
509,388 + GFF3076 0.67 -0.4
509,389 - GFF3076 0.67 -1.8
509,389 - GFF3076 0.67 -0.6
509,401 - GFF3076 0.68 -1.7
509,401 - GFF3076 0.68 -0.0
509,401 - GFF3076 0.68 -0.1
509,454 + GFF3076 0.75 +0.8
509,454 + GFF3076 0.75 -0.2
509,455 - GFF3076 0.75 -1.5
509,455 - GFF3076 0.75 -0.4
509,455 - GFF3076 0.75 -0.6
509,470 - GFF3076 0.77 +0.4
509,496 + GFF3076 0.81 -0.1
509,496 + GFF3076 0.81 +0.8
509,497 - GFF3076 0.81 -0.1
509,497 - GFF3076 0.81 +0.1
509,497 - GFF3076 0.81 -0.6
509,497 - GFF3076 0.81 -1.1
509,497 - GFF3076 0.81 +0.3
509,616 + -0.6
509,617 - -0.6
509,617 - +0.8
509,617 - -0.1
509,617 - -0.5
509,617 - -0.0
509,685 + -1.0
509,685 + -1.1
509,686 - -0.5
509,686 - -0.2
509,686 - -0.9
509,686 - +1.3
509,704 + -0.9
509,749 + +0.2
509,890 + GFF3077 0.11 -2.0
509,890 + GFF3077 0.11 +0.2
509,890 + GFF3077 0.11 +0.1
509,891 - GFF3077 0.11 +0.6
509,891 - GFF3077 0.11 -1.7
509,971 + GFF3077 0.16 +0.4
510,250 + GFF3077 0.32 -0.0
510,250 + GFF3077 0.32 +0.6
510,251 - GFF3077 0.32 -0.0
510,251 - GFF3077 0.32 -0.8
510,251 - GFF3077 0.32 -0.0
510,292 + GFF3077 0.34 +0.4
510,293 - GFF3077 0.34 +1.1
510,293 - GFF3077 0.34 +0.4
510,451 + GFF3077 0.43 -1.3
510,451 + GFF3077 0.43 -0.1
510,451 + GFF3077 0.43 +0.5
510,451 + GFF3077 0.43 -0.2
510,451 + GFF3077 0.43 -0.6
510,451 + GFF3077 0.43 -0.8
510,452 - GFF3077 0.43 +0.1
510,452 - GFF3077 0.43 -1.8
510,452 - GFF3077 0.43 +0.2
510,469 + GFF3077 0.44 -0.8
510,469 + GFF3077 0.44 +0.2
510,469 + GFF3077 0.44 +0.2
510,469 + GFF3077 0.44 +0.8
510,469 + GFF3077 0.44 -1.1
510,470 - GFF3077 0.44 -0.7
510,470 - GFF3077 0.44 -0.9
510,520 + GFF3077 0.47 -1.3
510,521 - GFF3077 0.47 +2.1
510,626 - GFF3077 0.53 +0.3
510,626 - GFF3077 0.53 +0.0
510,661 + GFF3077 0.55 -0.7
510,661 + GFF3077 0.55 +1.0
510,661 + GFF3077 0.55 -0.9
510,661 + GFF3077 0.55 -0.1
510,662 - GFF3077 0.55 -0.8
510,662 - GFF3077 0.55 +0.4
510,662 - GFF3077 0.55 +0.2
510,742 + GFF3077 0.60 -1.3
510,742 + GFF3077 0.60 +0.2
510,742 + GFF3077 0.60 -0.0
510,742 + GFF3077 0.60 +1.0
510,742 + GFF3077 0.60 +0.8
510,742 + GFF3077 0.60 -0.2
510,742 + GFF3077 0.60 +0.4
510,743 - GFF3077 0.60 -0.4
510,743 - GFF3077 0.60 -0.3
510,743 - GFF3077 0.60 -0.6
510,743 - GFF3077 0.60 -0.4
510,743 - GFF3077 0.60 +0.0
510,743 - GFF3077 0.60 +0.2
510,743 - GFF3077 0.60 -0.9
510,823 + GFF3077 0.65 +0.8
510,823 + GFF3077 0.65 -0.8
510,823 + GFF3077 0.65 -0.7
510,823 + GFF3077 0.65 -0.8
510,823 + GFF3077 0.65 +0.5
510,824 - GFF3077 0.65 -1.4
510,985 + GFF3077 0.74 -1.0
510,986 - GFF3077 0.74 +0.6
510,986 - GFF3077 0.74 -0.1
510,986 - GFF3077 0.74 -0.8
510,986 - GFF3077 0.74 -0.7
510,986 - GFF3077 0.74 -0.7
510,986 - GFF3077 0.74 -0.6
510,986 - GFF3077 0.74 -0.6
511,000 + GFF3077 0.75 -0.4
511,001 - GFF3077 0.75 -0.8
511,001 - GFF3077 0.75 +0.8
511,001 - GFF3077 0.75 -0.4
511,001 - GFF3077 0.75 +0.0
511,001 - GFF3077 0.75 -0.1
511,090 + GFF3077 0.80 +0.2
511,090 + GFF3077 0.80 -0.6
511,090 + GFF3077 0.80 -0.6
511,090 + GFF3077 0.80 -1.3
511,090 + GFF3077 0.80 -0.3
511,090 + GFF3077 0.80 +0.8
511,090 + GFF3077 0.80 -1.4
511,091 - GFF3077 0.80 -0.0
511,091 - GFF3077 0.80 -0.7
511,091 - GFF3077 0.80 -0.8
511,091 - GFF3077 0.80 -0.4
511,091 - GFF3077 0.80 +1.0
511,091 - GFF3077 0.80 -0.8
511,091 - GFF3077 0.80 +0.7
511,091 - GFF3077 0.80 +1.4
511,091 - GFF3077 0.80 +0.2
511,091 - GFF3077 0.80 +0.8
511,091 - GFF3077 0.80 -0.8
511,091 - GFF3077 0.80 -0.7
511,207 + GFF3077 0.87 -0.2
511,208 - GFF3077 0.87 +1.3
511,208 - GFF3077 0.87 -0.2
511,226 - GFF3077 0.88 -0.2
511,453 + +1.1
511,453 + +1.2
511,453 + -0.5
511,454 - -0.6
511,454 - +0.8
511,454 - -0.7
511,454 - -0.8
511,454 - +0.4
511,937 - GFF3078 0.28 -0.3
511,937 - GFF3078 0.28 -0.3
511,937 - GFF3078 0.28 -0.8
512,228 + GFF3078 0.46 -0.0
512,228 + GFF3078 0.46 +0.4
512,228 + GFF3078 0.46 -0.7
512,228 + GFF3078 0.46 -0.2
512,229 - GFF3078 0.46 -0.8
512,229 - GFF3078 0.46 -0.0
512,229 - GFF3078 0.46 -1.1
512,229 - GFF3078 0.46 -0.6
512,295 - GFF3078 0.50 -0.0
512,295 - GFF3078 0.50 +0.1
512,337 - GFF3078 0.53 -0.3
512,381 + GFF3078 0.56 +0.2
512,381 + GFF3078 0.56 -0.4
512,381 + GFF3078 0.56 -0.4
512,381 + GFF3078 0.56 +0.8
512,382 - GFF3078 0.56 +0.8
512,382 - GFF3078 0.56 -0.5
512,382 - GFF3078 0.56 +0.2
512,382 - GFF3078 0.56 -0.9
512,423 + GFF3078 0.58 +0.1
512,423 + GFF3078 0.58 -1.7
512,424 - GFF3078 0.58 +0.4
512,424 - GFF3078 0.58 +0.8

Or see this region's nucleotide sequence