Strain Fitness in Variovorax sp. SCN45 around GFF307

Experiment: phage_bap4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF305 and GFF306 are separated by 55 nucleotidesGFF306 and GFF307 overlap by 34 nucleotidesGFF307 and GFF308 are separated by 520 nucleotides GFF305 - uncharacterized domain / RidA/YER057c/UK114 superfamily, group 5, at 338,177 to 339,214 GFF305 GFF306 - FIG018329: 1-acyl-sn-glycerol-3-phosphate acyltransferase, at 339,270 to 340,067 GFF306 GFF307 - FIG143263: Glycosyl transferase, at 340,034 to 340,810 GFF307 GFF308 - Oxidoreductase, short-chain dehydrogenase/reductase family, at 341,331 to 342,062 GFF308 Position (kb) 340 341Strain fitness (log2 ratio) -2 -1 0 1 2at 339.041 kb on + strand, within GFF305at 339.041 kb on + strand, within GFF305at 339.041 kb on + strand, within GFF305at 339.041 kb on + strand, within GFF305at 339.041 kb on + strand, within GFF305at 339.041 kb on + strand, within GFF305at 339.041 kb on + strand, within GFF305at 339.041 kb on + strand, within GFF305at 339.042 kb on - strand, within GFF305at 339.042 kb on - strand, within GFF305at 339.042 kb on - strand, within GFF305at 339.042 kb on - strand, within GFF305at 339.042 kb on - strand, within GFF305at 339.042 kb on - strand, within GFF305at 339.042 kb on - strand, within GFF305at 339.042 kb on - strand, within GFF305at 339.045 kb on + strand, within GFF305at 339.045 kb on + strand, within GFF305at 339.045 kb on + strand, within GFF305at 339.045 kb on + strand, within GFF305at 339.045 kb on + strand, within GFF305at 339.045 kb on + strand, within GFF305at 339.045 kb on + strand, within GFF305at 339.045 kb on + strand, within GFF305at 339.046 kb on - strand, within GFF305at 339.046 kb on - strand, within GFF305at 339.046 kb on - strand, within GFF305at 339.046 kb on - strand, within GFF305at 339.046 kb on - strand, within GFF305at 339.097 kb on - strand, within GFF305at 339.131 kb on + strandat 339.131 kb on + strandat 339.132 kb on - strandat 339.132 kb on - strandat 339.132 kb on - strandat 339.322 kb on - strandat 339.384 kb on + strand, within GFF306at 339.384 kb on + strand, within GFF306at 339.384 kb on + strand, within GFF306at 339.385 kb on - strand, within GFF306at 339.444 kb on + strand, within GFF306at 339.445 kb on - strand, within GFF306at 339.666 kb on + strand, within GFF306at 339.666 kb on + strand, within GFF306at 339.666 kb on + strand, within GFF306at 339.666 kb on + strand, within GFF306at 339.666 kb on + strand, within GFF306at 339.667 kb on - strand, within GFF306at 339.667 kb on - strand, within GFF306at 339.667 kb on - strand, within GFF306at 339.667 kb on - strand, within GFF306at 339.667 kb on - strand, within GFF306at 339.667 kb on - strand, within GFF306at 339.667 kb on - strand, within GFF306at 339.667 kb on - strand, within GFF306at 339.667 kb on - strand, within GFF306at 339.667 kb on - strand, within GFF306at 339.865 kb on - strand, within GFF306at 339.865 kb on - strand, within GFF306at 339.987 kb on + strand, within GFF306at 339.987 kb on + strand, within GFF306at 339.987 kb on + strand, within GFF306at 339.987 kb on + strand, within GFF306at 339.987 kb on + strand, within GFF306at 339.987 kb on + strand, within GFF306at 339.987 kb on + strand, within GFF306at 339.988 kb on - strandat 339.988 kb on - strandat 339.988 kb on - strandat 340.076 kb on + strandat 340.076 kb on + strandat 340.076 kb on + strandat 340.076 kb on + strandat 340.077 kb on - strandat 340.077 kb on - strandat 340.077 kb on - strandat 340.077 kb on - strandat 340.137 kb on + strand, within GFF307at 340.470 kb on + strand, within GFF307at 340.470 kb on + strand, within GFF307at 340.470 kb on + strand, within GFF307at 340.470 kb on + strand, within GFF307at 340.471 kb on - strand, within GFF307at 340.471 kb on - strand, within GFF307at 340.471 kb on - strand, within GFF307at 340.505 kb on + strand, within GFF307at 340.506 kb on - strand, within GFF307at 340.652 kb on + strand, within GFF307at 340.652 kb on + strand, within GFF307at 340.652 kb on + strand, within GFF307at 340.652 kb on + strand, within GFF307at 340.653 kb on - strand, within GFF307at 340.653 kb on - strand, within GFF307at 340.840 kb on - strandat 340.846 kb on + strandat 341.374 kb on + strandat 341.374 kb on + strandat 341.602 kb on + strand, within GFF308at 341.602 kb on + strand, within GFF308at 341.602 kb on + strand, within GFF308at 341.602 kb on + strand, within GFF308at 341.602 kb on + strand, within GFF308at 341.602 kb on + strand, within GFF308at 341.602 kb on + strand, within GFF308at 341.602 kb on + strand, within GFF308at 341.602 kb on + strand, within GFF308at 341.603 kb on - strand, within GFF308at 341.603 kb on - strand, within GFF308at 341.603 kb on - strand, within GFF308at 341.603 kb on - strand, within GFF308at 341.603 kb on - strand, within GFF308at 341.603 kb on - strand, within GFF308at 341.603 kb on - strand, within GFF308

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
remove
339,041 + GFF305 0.83 -0.7
339,041 + GFF305 0.83 -1.8
339,041 + GFF305 0.83 -0.5
339,041 + GFF305 0.83 +0.6
339,041 + GFF305 0.83 -0.4
339,041 + GFF305 0.83 -1.2
339,041 + GFF305 0.83 +0.4
339,041 + GFF305 0.83 +0.2
339,042 - GFF305 0.83 -0.3
339,042 - GFF305 0.83 -1.0
339,042 - GFF305 0.83 -1.0
339,042 - GFF305 0.83 +0.6
339,042 - GFF305 0.83 -0.8
339,042 - GFF305 0.83 -0.3
339,042 - GFF305 0.83 -2.0
339,042 - GFF305 0.83 -0.3
339,045 + GFF305 0.84 -0.2
339,045 + GFF305 0.84 -1.6
339,045 + GFF305 0.84 -0.9
339,045 + GFF305 0.84 +1.2
339,045 + GFF305 0.84 -0.6
339,045 + GFF305 0.84 -0.5
339,045 + GFF305 0.84 +0.2
339,045 + GFF305 0.84 +0.7
339,046 - GFF305 0.84 +0.4
339,046 - GFF305 0.84 -0.2
339,046 - GFF305 0.84 -0.0
339,046 - GFF305 0.84 -0.4
339,046 - GFF305 0.84 +2.1
339,097 - GFF305 0.89 +0.4
339,131 + -0.0
339,131 + +0.3
339,132 - -1.0
339,132 - -0.6
339,132 - +1.6
339,322 - -0.4
339,384 + GFF306 0.14 +0.3
339,384 + GFF306 0.14 -0.4
339,384 + GFF306 0.14 +0.7
339,385 - GFF306 0.14 -0.2
339,444 + GFF306 0.22 +0.4
339,445 - GFF306 0.22 -0.6
339,666 + GFF306 0.50 -0.2
339,666 + GFF306 0.50 +1.2
339,666 + GFF306 0.50 -1.4
339,666 + GFF306 0.50 -0.4
339,666 + GFF306 0.50 -0.1
339,667 - GFF306 0.50 +0.6
339,667 - GFF306 0.50 -0.4
339,667 - GFF306 0.50 +0.3
339,667 - GFF306 0.50 -0.0
339,667 - GFF306 0.50 -0.6
339,667 - GFF306 0.50 +0.6
339,667 - GFF306 0.50 +0.5
339,667 - GFF306 0.50 +0.1
339,667 - GFF306 0.50 -0.6
339,667 - GFF306 0.50 +0.1
339,865 - GFF306 0.75 -0.4
339,865 - GFF306 0.75 +0.1
339,987 + GFF306 0.90 -0.5
339,987 + GFF306 0.90 -0.4
339,987 + GFF306 0.90 +0.3
339,987 + GFF306 0.90 -0.3
339,987 + GFF306 0.90 +0.6
339,987 + GFF306 0.90 +0.5
339,987 + GFF306 0.90 -1.2
339,988 - -0.0
339,988 - -0.4
339,988 - -0.6
340,076 + +0.2
340,076 + -0.4
340,076 + -0.4
340,076 + -0.1
340,077 - -0.7
340,077 - +2.0
340,077 - -0.7
340,077 - -1.6
340,137 + GFF307 0.13 -0.2
340,470 + GFF307 0.56 -0.3
340,470 + GFF307 0.56 +0.4
340,470 + GFF307 0.56 -1.5
340,470 + GFF307 0.56 +0.3
340,471 - GFF307 0.56 -0.5
340,471 - GFF307 0.56 -0.8
340,471 - GFF307 0.56 -0.7
340,505 + GFF307 0.61 +1.0
340,506 - GFF307 0.61 -1.0
340,652 + GFF307 0.80 -1.0
340,652 + GFF307 0.80 +0.1
340,652 + GFF307 0.80 -0.4
340,652 + GFF307 0.80 -0.5
340,653 - GFF307 0.80 -0.6
340,653 - GFF307 0.80 +0.4
340,840 - -0.9
340,846 + -0.3
341,374 + -0.2
341,374 + +0.2
341,602 + GFF308 0.37 +0.2
341,602 + GFF308 0.37 -0.3
341,602 + GFF308 0.37 -0.4
341,602 + GFF308 0.37 +0.2
341,602 + GFF308 0.37 +1.2
341,602 + GFF308 0.37 -0.6
341,602 + GFF308 0.37 -0.6
341,602 + GFF308 0.37 -1.4
341,602 + GFF308 0.37 -1.2
341,603 - GFF308 0.37 +0.2
341,603 - GFF308 0.37 -0.6
341,603 - GFF308 0.37 +1.6
341,603 - GFF308 0.37 -0.3
341,603 - GFF308 0.37 -0.8
341,603 - GFF308 0.37 -1.4
341,603 - GFF308 0.37 +0.2

Or see this region's nucleotide sequence