Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3067 and GFF3068 are separated by 28 nucleotides GFF3068 and GFF3069 are separated by 140 nucleotides GFF3069 and GFF3070 are separated by 18 nucleotides GFF3070 and GFF3071 overlap by 4 nucleotides GFF3071 and GFF3072 overlap by 16 nucleotides
GFF3067 - Nitrogen regulation protein NtrB (EC 2.7.13.3), at 500,946 to 502,025
GFF3067
GFF3068 - FIG00538108: hypothetical protein, at 502,054 to 502,563
GFF3068
GFF3069 - Glutamine synthetase type I (EC 6.3.1.2), at 502,704 to 504,119
GFF3069
GFF3070 - no description, at 504,138 to 504,269
GFF3070
GFF3071 - ADP-ribose pyrophosphatase of COG1058 family (EC 3.6.1.13), at 504,266 to 505,078
GFF3071
GFF3072 - Putative transmembrane protein, at 505,063 to 505,953
GFF3072
Position (kb) 502
503
504
505 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 501.779 kb on - strand, within GFF3067 at 501.779 kb on - strand, within GFF3067 at 502.025 kb on + strand at 502.025 kb on + strand at 502.026 kb on - strand at 502.026 kb on - strand at 502.048 kb on + strand at 502.048 kb on + strand at 502.048 kb on + strand at 502.048 kb on + strand at 502.049 kb on - strand at 502.157 kb on + strand, within GFF3068 at 502.157 kb on + strand, within GFF3068 at 502.157 kb on + strand, within GFF3068 at 502.157 kb on + strand, within GFF3068 at 502.157 kb on + strand, within GFF3068 at 502.158 kb on - strand, within GFF3068 at 502.158 kb on - strand, within GFF3068 at 502.166 kb on + strand, within GFF3068 at 502.211 kb on + strand, within GFF3068 at 502.211 kb on + strand, within GFF3068 at 502.211 kb on + strand, within GFF3068 at 502.212 kb on - strand, within GFF3068 at 502.212 kb on - strand, within GFF3068 at 502.469 kb on + strand, within GFF3068 at 502.469 kb on + strand, within GFF3068 at 502.469 kb on + strand, within GFF3068 at 502.469 kb on + strand, within GFF3068 at 502.469 kb on + strand, within GFF3068 at 502.470 kb on - strand, within GFF3068 at 502.470 kb on - strand, within GFF3068 at 502.472 kb on + strand, within GFF3068 at 502.568 kb on - strand at 502.568 kb on - strand at 502.673 kb on + strand at 502.673 kb on + strand at 502.673 kb on + strand at 502.673 kb on + strand at 502.673 kb on + strand at 502.673 kb on + strand at 502.673 kb on + strand at 502.673 kb on + strand at 502.673 kb on + strand at 502.673 kb on + strand at 502.673 kb on + strand at 502.673 kb on + strand at 502.673 kb on + strand at 502.673 kb on + strand at 502.673 kb on + strand at 502.674 kb on - strand at 502.674 kb on - strand at 502.674 kb on - strand at 502.674 kb on - strand at 502.674 kb on - strand at 502.674 kb on - strand at 502.674 kb on - strand at 504.153 kb on - strand, within GFF3070 at 504.153 kb on - strand, within GFF3070 at 504.153 kb on - strand, within GFF3070 at 504.153 kb on - strand, within GFF3070 at 504.153 kb on - strand, within GFF3070 at 504.153 kb on - strand, within GFF3070 at 504.153 kb on - strand, within GFF3070 at 504.319 kb on + strand at 504.319 kb on + strand at 504.330 kb on + strand at 504.330 kb on + strand at 504.330 kb on + strand at 504.331 kb on - strand at 504.331 kb on - strand at 504.331 kb on - strand at 504.388 kb on - strand, within GFF3071 at 504.444 kb on + strand, within GFF3071 at 504.540 kb on + strand, within GFF3071 at 504.540 kb on + strand, within GFF3071 at 504.541 kb on - strand, within GFF3071 at 504.639 kb on + strand, within GFF3071 at 504.639 kb on + strand, within GFF3071 at 504.639 kb on + strand, within GFF3071 at 504.639 kb on + strand, within GFF3071 at 504.639 kb on + strand, within GFF3071 at 504.640 kb on - strand, within GFF3071 at 504.640 kb on - strand, within GFF3071 at 504.640 kb on - strand, within GFF3071 at 504.640 kb on - strand, within GFF3071 at 504.720 kb on + strand, within GFF3071 at 504.720 kb on + strand, within GFF3071 at 504.939 kb on + strand, within GFF3071 at 504.939 kb on + strand, within GFF3071 at 504.939 kb on + strand, within GFF3071 at 504.939 kb on + strand, within GFF3071 at 504.940 kb on - strand, within GFF3071 at 504.940 kb on - strand, within GFF3071 at 504.940 kb on - strand, within GFF3071 at 504.940 kb on - strand, within GFF3071
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 501,779 - GFF3067 0.77 -0.8 501,779 - GFF3067 0.77 -1.6 502,025 + -0.5 502,025 + -0.6 502,026 - -0.4 502,026 - -1.1 502,048 + +1.0 502,048 + +1.2 502,048 + +0.8 502,048 + +1.2 502,049 - -0.8 502,157 + GFF3068 0.20 +3.0 502,157 + GFF3068 0.20 +2.1 502,157 + GFF3068 0.20 +3.6 502,157 + GFF3068 0.20 +3.5 502,157 + GFF3068 0.20 +3.8 502,158 - GFF3068 0.20 +3.7 502,158 - GFF3068 0.20 +3.5 502,166 + GFF3068 0.22 +2.5 502,211 + GFF3068 0.31 +3.7 502,211 + GFF3068 0.31 +3.3 502,211 + GFF3068 0.31 +2.9 502,212 - GFF3068 0.31 +3.5 502,212 - GFF3068 0.31 +4.0 502,469 + GFF3068 0.81 +3.4 502,469 + GFF3068 0.81 +2.9 502,469 + GFF3068 0.81 +4.1 502,469 + GFF3068 0.81 +3.3 502,469 + GFF3068 0.81 +4.0 502,470 - GFF3068 0.82 +4.2 502,470 - GFF3068 0.82 +3.9 502,472 + GFF3068 0.82 +3.4 502,568 - +0.4 502,568 - +0.0 502,673 + -0.0 502,673 + +0.4 502,673 + -0.7 502,673 + -0.8 502,673 + +0.8 502,673 + -0.3 502,673 + -0.5 502,673 + -0.8 502,673 + +1.5 502,673 + -1.0 502,673 + +0.3 502,673 + -0.3 502,673 + -1.1 502,673 + -0.0 502,673 + +0.4 502,674 - -0.6 502,674 - +1.0 502,674 - +0.0 502,674 - +0.4 502,674 - +0.5 502,674 - -1.0 502,674 - -1.2 504,153 - GFF3070 0.11 +0.4 504,153 - GFF3070 0.11 -1.2 504,153 - GFF3070 0.11 -0.2 504,153 - GFF3070 0.11 -0.2 504,153 - GFF3070 0.11 +0.5 504,153 - GFF3070 0.11 -0.0 504,153 - GFF3070 0.11 +0.2 504,319 + +1.0 504,319 + +1.3 504,330 + -0.3 504,330 + +0.4 504,330 + -1.2 504,331 - -0.6 504,331 - +0.2 504,331 - -0.1 504,388 - GFF3071 0.15 -0.6 504,444 + GFF3071 0.22 -0.3 504,540 + GFF3071 0.34 -0.8 504,540 + GFF3071 0.34 -0.2 504,541 - GFF3071 0.34 -0.0 504,639 + GFF3071 0.46 +0.3 504,639 + GFF3071 0.46 -0.2 504,639 + GFF3071 0.46 +0.0 504,639 + GFF3071 0.46 -0.0 504,639 + GFF3071 0.46 +0.8 504,640 - GFF3071 0.46 -0.2 504,640 - GFF3071 0.46 -0.5 504,640 - GFF3071 0.46 -0.6 504,640 - GFF3071 0.46 +0.2 504,720 + GFF3071 0.56 -0.9 504,720 + GFF3071 0.56 +0.2 504,939 + GFF3071 0.83 -1.3 504,939 + GFF3071 0.83 +1.3 504,939 + GFF3071 0.83 +1.6 504,939 + GFF3071 0.83 -0.1 504,940 - GFF3071 0.83 -0.4 504,940 - GFF3071 0.83 -0.7 504,940 - GFF3071 0.83 +0.9 504,940 - GFF3071 0.83 -0.2
Or see this region's nucleotide sequence