Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3052 and GFF3053 overlap by 4 nucleotides GFF3053 and GFF3054 overlap by 4 nucleotides GFF3054 and GFF3055 are separated by 13 nucleotides GFF3055 and GFF3056 are separated by 63 nucleotides
GFF3052 - Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54), at 486,386 to 487,369
GFF3052
GFF3053 - Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54), at 487,366 to 488,025
GFF3053
GFF3054 - Biotin carboxylase of acetyl-CoA carboxylase (EC 6.3.4.14), at 488,022 to 489,374
GFF3054
GFF3055 - Biotin carboxyl carrier protein of acetyl-CoA carboxylase, at 489,388 to 489,882
GFF3055
GFF3056 - Nitrogen assimilation regulatory protein Nac, at 489,946 to 490,917
GFF3056
Position (kb) 488
489
490 Strain fitness (log2 ratio) -2
-1
0
1 at 487.613 kb on + strand, within GFF3053 at 487.637 kb on + strand, within GFF3053 at 487.638 kb on - strand, within GFF3053 at 487.739 kb on + strand, within GFF3053 at 487.739 kb on + strand, within GFF3053 at 488.236 kb on + strand, within GFF3054 at 488.236 kb on + strand, within GFF3054 at 488.237 kb on - strand, within GFF3054 at 488.521 kb on + strand, within GFF3054 at 488.521 kb on + strand, within GFF3054 at 488.522 kb on - strand, within GFF3054 at 488.540 kb on - strand, within GFF3054 at 488.745 kb on + strand, within GFF3054 at 488.745 kb on + strand, within GFF3054 at 488.746 kb on - strand, within GFF3054 at 488.746 kb on - strand, within GFF3054 at 488.746 kb on - strand, within GFF3054 at 488.746 kb on - strand, within GFF3054 at 488.780 kb on - strand, within GFF3054 at 488.780 kb on - strand, within GFF3054 at 488.780 kb on - strand, within GFF3054 at 489.253 kb on + strand at 489.253 kb on + strand at 489.254 kb on - strand at 489.947 kb on + strand at 489.947 kb on + strand at 489.948 kb on - strand at 490.295 kb on + strand, within GFF3056 at 490.295 kb on + strand, within GFF3056 at 490.296 kb on - strand, within GFF3056 at 490.296 kb on - strand, within GFF3056
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 487,613 + GFF3053 0.37 -0.2 487,637 + GFF3053 0.41 -0.9 487,638 - GFF3053 0.41 -1.6 487,739 + GFF3053 0.57 -0.6 487,739 + GFF3053 0.57 -0.6 488,236 + GFF3054 0.16 -1.1 488,236 + GFF3054 0.16 -0.1 488,237 - GFF3054 0.16 +0.8 488,521 + GFF3054 0.37 -0.2 488,521 + GFF3054 0.37 +0.8 488,522 - GFF3054 0.37 -0.6 488,540 - GFF3054 0.38 -1.3 488,745 + GFF3054 0.53 +0.9 488,745 + GFF3054 0.53 -0.6 488,746 - GFF3054 0.54 -0.5 488,746 - GFF3054 0.54 -0.6 488,746 - GFF3054 0.54 -0.2 488,746 - GFF3054 0.54 -0.6 488,780 - GFF3054 0.56 -0.6 488,780 - GFF3054 0.56 +0.3 488,780 - GFF3054 0.56 -1.4 489,253 + -0.8 489,253 + +0.8 489,254 - +0.9 489,947 + +0.3 489,947 + -0.3 489,948 - -2.2 490,295 + GFF3056 0.36 -0.6 490,295 + GFF3056 0.36 -0.7 490,296 - GFF3056 0.36 +0.3 490,296 - GFF3056 0.36 -0.0
Or see this region's nucleotide sequence