Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2993 and GFF2994 are separated by 115 nucleotides GFF2994 and GFF2995 are separated by 6 nucleotides GFF2995 and GFF2996 are separated by 14 nucleotides
GFF2993 - Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases, at 424,114 to 425,544
GFF2993
GFF2994 - Transcriptional regulator, LysR family, at 425,660 to 426,610
GFF2994
GFF2995 - hypothetical protein, at 426,617 to 427,279
GFF2995
GFF2996 - Thiol-disulfide isomerase and thioredoxins, at 427,294 to 427,677
GFF2996
Position (kb) 425
426
427 Strain fitness (log2 ratio) -2
-1
0
1
2 at 425.090 kb on + strand, within GFF2993 at 425.090 kb on + strand, within GFF2993 at 425.091 kb on - strand, within GFF2993 at 425.091 kb on - strand, within GFF2993 at 425.183 kb on + strand, within GFF2993 at 425.184 kb on - strand, within GFF2993 at 425.273 kb on + strand, within GFF2993 at 425.274 kb on - strand, within GFF2993 at 425.274 kb on - strand, within GFF2993 at 425.274 kb on - strand, within GFF2993 at 425.274 kb on - strand, within GFF2993 at 425.274 kb on - strand, within GFF2993 at 425.274 kb on - strand, within GFF2993 at 425.274 kb on - strand, within GFF2993 at 425.274 kb on - strand, within GFF2993 at 425.274 kb on - strand, within GFF2993 at 425.274 kb on - strand, within GFF2993 at 425.411 kb on + strand at 425.411 kb on + strand at 425.412 kb on - strand at 425.412 kb on - strand at 425.508 kb on - strand at 425.581 kb on + strand at 425.581 kb on + strand at 425.581 kb on + strand at 425.581 kb on + strand at 425.581 kb on + strand at 425.582 kb on - strand at 425.582 kb on - strand at 425.582 kb on - strand at 425.625 kb on + strand at 425.626 kb on - strand at 425.626 kb on - strand at 425.626 kb on - strand at 425.626 kb on - strand at 425.747 kb on + strand at 425.747 kb on + strand at 425.747 kb on + strand at 425.747 kb on + strand at 425.747 kb on + strand at 425.747 kb on + strand at 425.747 kb on + strand at 425.747 kb on + strand at 425.747 kb on + strand at 425.747 kb on + strand at 425.748 kb on - strand at 426.110 kb on + strand, within GFF2994 at 426.110 kb on + strand, within GFF2994 at 426.110 kb on + strand, within GFF2994 at 426.110 kb on + strand, within GFF2994 at 426.110 kb on + strand, within GFF2994 at 426.111 kb on - strand, within GFF2994 at 426.111 kb on - strand, within GFF2994 at 426.111 kb on - strand, within GFF2994 at 426.111 kb on - strand, within GFF2994 at 426.111 kb on - strand, within GFF2994 at 426.111 kb on - strand, within GFF2994 at 426.141 kb on + strand, within GFF2994 at 426.142 kb on - strand, within GFF2994 at 426.167 kb on + strand, within GFF2994 at 426.167 kb on + strand, within GFF2994 at 426.167 kb on + strand, within GFF2994 at 426.168 kb on - strand, within GFF2994 at 426.168 kb on - strand, within GFF2994 at 426.168 kb on - strand, within GFF2994 at 426.315 kb on - strand, within GFF2994 at 426.784 kb on - strand, within GFF2995 at 426.784 kb on - strand, within GFF2995 at 426.843 kb on + strand, within GFF2995 at 426.843 kb on + strand, within GFF2995 at 426.843 kb on + strand, within GFF2995 at 426.843 kb on + strand, within GFF2995 at 426.843 kb on + strand, within GFF2995 at 426.843 kb on + strand, within GFF2995 at 426.843 kb on + strand, within GFF2995 at 426.843 kb on + strand, within GFF2995 at 426.843 kb on + strand, within GFF2995 at 426.843 kb on + strand, within GFF2995 at 426.844 kb on - strand, within GFF2995 at 426.844 kb on - strand, within GFF2995 at 426.844 kb on - strand, within GFF2995 at 426.844 kb on - strand, within GFF2995 at 426.844 kb on - strand, within GFF2995 at 426.844 kb on - strand, within GFF2995 at 426.844 kb on - strand, within GFF2995 at 426.844 kb on - strand, within GFF2995 at 426.844 kb on - strand, within GFF2995 at 426.951 kb on + strand, within GFF2995 at 426.951 kb on + strand, within GFF2995 at 426.951 kb on + strand, within GFF2995 at 426.951 kb on + strand, within GFF2995 at 426.951 kb on + strand, within GFF2995 at 426.951 kb on + strand, within GFF2995 at 426.951 kb on + strand, within GFF2995 at 426.951 kb on + strand, within GFF2995 at 426.952 kb on - strand, within GFF2995 at 426.952 kb on - strand, within GFF2995 at 426.952 kb on - strand, within GFF2995 at 426.952 kb on - strand, within GFF2995 at 426.952 kb on - strand, within GFF2995 at 426.952 kb on - strand, within GFF2995 at 426.952 kb on - strand, within GFF2995 at 426.952 kb on - strand, within GFF2995 at 427.014 kb on + strand, within GFF2995 at 427.014 kb on + strand, within GFF2995 at 427.014 kb on + strand, within GFF2995 at 427.014 kb on + strand, within GFF2995 at 427.014 kb on + strand, within GFF2995 at 427.015 kb on - strand, within GFF2995 at 427.015 kb on - strand, within GFF2995 at 427.015 kb on - strand, within GFF2995 at 427.029 kb on + strand, within GFF2995 at 427.029 kb on + strand, within GFF2995 at 427.030 kb on - strand, within GFF2995 at 427.030 kb on - strand, within GFF2995 at 427.030 kb on - strand, within GFF2995 at 427.116 kb on + strand, within GFF2995 at 427.116 kb on + strand, within GFF2995 at 427.117 kb on - strand, within GFF2995 at 427.122 kb on + strand, within GFF2995 at 427.122 kb on + strand, within GFF2995 at 427.122 kb on + strand, within GFF2995 at 427.122 kb on + strand, within GFF2995 at 427.122 kb on + strand, within GFF2995 at 427.122 kb on + strand, within GFF2995 at 427.122 kb on + strand, within GFF2995 at 427.122 kb on + strand, within GFF2995 at 427.122 kb on + strand, within GFF2995 at 427.122 kb on + strand, within GFF2995 at 427.122 kb on + strand, within GFF2995 at 427.122 kb on + strand, within GFF2995 at 427.122 kb on + strand, within GFF2995 at 427.122 kb on + strand, within GFF2995 at 427.122 kb on + strand, within GFF2995 at 427.122 kb on + strand, within GFF2995 at 427.122 kb on + strand, within GFF2995 at 427.122 kb on + strand, within GFF2995 at 427.122 kb on + strand, within GFF2995 at 427.122 kb on + strand, within GFF2995 at 427.123 kb on - strand, within GFF2995 at 427.123 kb on - strand, within GFF2995 at 427.123 kb on - strand, within GFF2995 at 427.123 kb on - strand, within GFF2995 at 427.123 kb on - strand, within GFF2995 at 427.123 kb on - strand, within GFF2995 at 427.123 kb on - strand, within GFF2995 at 427.123 kb on - strand, within GFF2995 at 427.123 kb on - strand, within GFF2995 at 427.123 kb on - strand, within GFF2995 at 427.123 kb on - strand, within GFF2995 at 427.123 kb on - strand, within GFF2995 at 427.123 kb on - strand, within GFF2995 at 427.123 kb on - strand, within GFF2995 at 427.123 kb on - strand, within GFF2995 at 427.123 kb on - strand, within GFF2995 at 427.123 kb on - strand, within GFF2995 at 427.184 kb on + strand, within GFF2995 at 427.184 kb on + strand, within GFF2995 at 427.184 kb on + strand, within GFF2995 at 427.185 kb on - strand, within GFF2995
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 425,090 + GFF2993 0.68 +1.3 425,090 + GFF2993 0.68 +1.8 425,091 - GFF2993 0.68 -0.2 425,091 - GFF2993 0.68 -0.2 425,183 + GFF2993 0.75 +0.3 425,184 - GFF2993 0.75 -0.4 425,273 + GFF2993 0.81 +0.1 425,274 - GFF2993 0.81 -0.7 425,274 - GFF2993 0.81 +1.3 425,274 - GFF2993 0.81 -1.0 425,274 - GFF2993 0.81 -0.5 425,274 - GFF2993 0.81 -2.4 425,274 - GFF2993 0.81 -1.2 425,274 - GFF2993 0.81 -0.5 425,274 - GFF2993 0.81 +0.5 425,274 - GFF2993 0.81 -0.7 425,274 - GFF2993 0.81 +0.4 425,411 + +0.3 425,411 + -0.6 425,412 - -0.6 425,412 - -0.1 425,508 - +0.6 425,581 + +0.4 425,581 + -0.2 425,581 + +1.2 425,581 + +0.4 425,581 + -0.2 425,582 - -1.0 425,582 - -0.4 425,582 - -0.1 425,625 + -1.0 425,626 - +0.8 425,626 - -1.0 425,626 - -0.4 425,626 - +0.4 425,747 + +0.2 425,747 + +0.2 425,747 + -0.6 425,747 + +0.2 425,747 + +0.9 425,747 + -0.0 425,747 + -0.6 425,747 + -1.2 425,747 + +0.0 425,747 + +0.6 425,748 - -0.4 426,110 + GFF2994 0.47 -1.3 426,110 + GFF2994 0.47 +0.4 426,110 + GFF2994 0.47 +0.7 426,110 + GFF2994 0.47 +1.2 426,110 + GFF2994 0.47 +0.7 426,111 - GFF2994 0.47 +0.6 426,111 - GFF2994 0.47 -0.5 426,111 - GFF2994 0.47 +1.1 426,111 - GFF2994 0.47 -0.2 426,111 - GFF2994 0.47 +1.2 426,111 - GFF2994 0.47 -1.0 426,141 + GFF2994 0.51 -0.5 426,142 - GFF2994 0.51 +1.8 426,167 + GFF2994 0.53 +1.1 426,167 + GFF2994 0.53 +0.3 426,167 + GFF2994 0.53 -0.9 426,168 - GFF2994 0.53 -0.7 426,168 - GFF2994 0.53 +0.4 426,168 - GFF2994 0.53 +0.1 426,315 - GFF2994 0.69 +0.5 426,784 - GFF2995 0.25 -0.7 426,784 - GFF2995 0.25 +0.8 426,843 + GFF2995 0.34 -0.4 426,843 + GFF2995 0.34 -0.7 426,843 + GFF2995 0.34 +0.1 426,843 + GFF2995 0.34 +0.0 426,843 + GFF2995 0.34 +0.8 426,843 + GFF2995 0.34 +0.2 426,843 + GFF2995 0.34 +0.8 426,843 + GFF2995 0.34 +0.1 426,843 + GFF2995 0.34 -0.7 426,843 + GFF2995 0.34 -0.6 426,844 - GFF2995 0.34 +1.0 426,844 - GFF2995 0.34 +0.1 426,844 - GFF2995 0.34 +0.0 426,844 - GFF2995 0.34 -0.5 426,844 - GFF2995 0.34 -0.6 426,844 - GFF2995 0.34 -0.6 426,844 - GFF2995 0.34 -0.0 426,844 - GFF2995 0.34 -0.3 426,844 - GFF2995 0.34 -0.9 426,951 + GFF2995 0.50 -0.2 426,951 + GFF2995 0.50 +0.4 426,951 + GFF2995 0.50 +1.8 426,951 + GFF2995 0.50 -0.9 426,951 + GFF2995 0.50 -0.3 426,951 + GFF2995 0.50 +0.8 426,951 + GFF2995 0.50 -0.2 426,951 + GFF2995 0.50 +0.5 426,952 - GFF2995 0.51 +0.1 426,952 - GFF2995 0.51 +1.2 426,952 - GFF2995 0.51 +0.3 426,952 - GFF2995 0.51 -0.1 426,952 - GFF2995 0.51 +0.2 426,952 - GFF2995 0.51 +1.4 426,952 - GFF2995 0.51 +0.2 426,952 - GFF2995 0.51 +0.1 427,014 + GFF2995 0.60 +0.5 427,014 + GFF2995 0.60 +0.5 427,014 + GFF2995 0.60 -0.0 427,014 + GFF2995 0.60 +0.3 427,014 + GFF2995 0.60 -0.1 427,015 - GFF2995 0.60 +0.3 427,015 - GFF2995 0.60 +1.5 427,015 - GFF2995 0.60 -0.3 427,029 + GFF2995 0.62 -1.0 427,029 + GFF2995 0.62 -0.2 427,030 - GFF2995 0.62 -1.2 427,030 - GFF2995 0.62 -0.1 427,030 - GFF2995 0.62 +0.3 427,116 + GFF2995 0.75 +0.4 427,116 + GFF2995 0.75 -0.3 427,117 - GFF2995 0.75 -0.7 427,122 + GFF2995 0.76 -0.2 427,122 + GFF2995 0.76 -0.3 427,122 + GFF2995 0.76 +0.2 427,122 + GFF2995 0.76 +0.8 427,122 + GFF2995 0.76 +1.0 427,122 + GFF2995 0.76 -1.9 427,122 + GFF2995 0.76 +0.5 427,122 + GFF2995 0.76 -0.1 427,122 + GFF2995 0.76 -0.9 427,122 + GFF2995 0.76 -0.1 427,122 + GFF2995 0.76 -0.7 427,122 + GFF2995 0.76 +0.0 427,122 + GFF2995 0.76 +0.5 427,122 + GFF2995 0.76 -1.1 427,122 + GFF2995 0.76 -0.2 427,122 + GFF2995 0.76 -0.2 427,122 + GFF2995 0.76 +0.7 427,122 + GFF2995 0.76 +1.2 427,122 + GFF2995 0.76 -1.0 427,122 + GFF2995 0.76 -0.5 427,123 - GFF2995 0.76 +0.6 427,123 - GFF2995 0.76 +0.4 427,123 - GFF2995 0.76 -0.9 427,123 - GFF2995 0.76 -0.4 427,123 - GFF2995 0.76 -0.4 427,123 - GFF2995 0.76 +0.3 427,123 - GFF2995 0.76 -0.4 427,123 - GFF2995 0.76 +0.6 427,123 - GFF2995 0.76 -1.0 427,123 - GFF2995 0.76 +0.4 427,123 - GFF2995 0.76 +0.1 427,123 - GFF2995 0.76 +1.7 427,123 - GFF2995 0.76 +0.1 427,123 - GFF2995 0.76 +0.7 427,123 - GFF2995 0.76 +1.0 427,123 - GFF2995 0.76 -0.6 427,123 - GFF2995 0.76 -0.4 427,184 + GFF2995 0.86 -1.4 427,184 + GFF2995 0.86 +1.0 427,184 + GFF2995 0.86 +1.0 427,185 - GFF2995 0.86 -0.1
Or see this region's nucleotide sequence