Strain Fitness in Variovorax sp. SCN45 around GFF2945

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2943 and GFF2944 are separated by 39 nucleotidesGFF2944 and GFF2945 are separated by 23 nucleotidesGFF2945 and GFF2946 overlap by 4 nucleotidesGFF2946 and GFF2947 overlap by 4 nucleotides GFF2943 - S-formylglutathione hydrolase (EC 3.1.2.12), at 369,556 to 370,434 GFF2943 GFF2944 - Acetyltransferase, at 370,474 to 370,977 GFF2944 GFF2945 - Possible glyoxylase family protein (Lactoylglutathione lyase) (EC 4.4.1.5), at 371,001 to 371,390 GFF2945 GFF2946 - Regulator of competence-specific genes, at 371,387 to 371,797 GFF2946 GFF2947 - 3'-5' exonuclease, at 371,794 to 372,408 GFF2947 Position (kb) 371 372Strain fitness (log2 ratio) -2 -1 0 1at 370.144 kb on + strand, within GFF2943at 370.145 kb on - strand, within GFF2943at 370.357 kb on + strandat 370.357 kb on + strandat 370.358 kb on - strandat 370.369 kb on + strandat 370.369 kb on + strandat 370.369 kb on + strandat 370.369 kb on + strandat 370.370 kb on - strandat 370.372 kb on + strandat 370.372 kb on + strandat 370.372 kb on + strandat 370.372 kb on + strandat 370.372 kb on + strandat 370.372 kb on + strandat 370.372 kb on + strandat 370.372 kb on + strandat 370.372 kb on + strandat 370.372 kb on + strandat 370.372 kb on + strandat 370.373 kb on - strandat 370.373 kb on - strandat 370.373 kb on - strandat 370.373 kb on - strandat 370.373 kb on - strandat 370.373 kb on - strandat 370.373 kb on - strandat 370.373 kb on - strandat 370.373 kb on - strandat 370.373 kb on - strandat 370.373 kb on - strandat 370.373 kb on - strandat 370.470 kb on + strandat 370.471 kb on - strandat 370.729 kb on + strand, within GFF2944at 370.729 kb on + strand, within GFF2944at 370.729 kb on + strand, within GFF2944at 370.729 kb on + strand, within GFF2944at 370.730 kb on - strand, within GFF2944at 370.730 kb on - strand, within GFF2944at 370.730 kb on - strand, within GFF2944at 370.867 kb on + strand, within GFF2944at 370.868 kb on - strand, within GFF2944at 370.868 kb on - strand, within GFF2944at 370.868 kb on - strand, within GFF2944at 370.868 kb on - strand, within GFF2944at 370.868 kb on - strand, within GFF2944at 370.936 kb on + strandat 370.936 kb on + strandat 370.937 kb on - strandat 371.058 kb on + strand, within GFF2945at 371.058 kb on + strand, within GFF2945at 371.058 kb on + strand, within GFF2945at 371.058 kb on + strand, within GFF2945at 371.059 kb on - strand, within GFF2945at 371.059 kb on - strand, within GFF2945at 371.059 kb on - strand, within GFF2945at 371.059 kb on - strand, within GFF2945at 371.059 kb on - strand, within GFF2945at 371.059 kb on - strand, within GFF2945at 371.059 kb on - strand, within GFF2945at 371.059 kb on - strand, within GFF2945at 371.059 kb on - strand, within GFF2945at 371.059 kb on - strand, within GFF2945at 371.059 kb on - strand, within GFF2945at 371.059 kb on - strand, within GFF2945at 371.059 kb on - strand, within GFF2945at 371.059 kb on - strand, within GFF2945at 371.059 kb on - strand, within GFF2945at 371.059 kb on - strand, within GFF2945at 371.059 kb on - strand, within GFF2945at 371.059 kb on - strand, within GFF2945at 371.059 kb on - strand, within GFF2945at 371.067 kb on + strand, within GFF2945at 371.067 kb on + strand, within GFF2945at 371.067 kb on + strand, within GFF2945at 371.068 kb on - strand, within GFF2945at 371.094 kb on + strand, within GFF2945at 371.094 kb on + strand, within GFF2945at 371.094 kb on + strand, within GFF2945at 371.095 kb on - strand, within GFF2945at 371.095 kb on - strand, within GFF2945at 371.095 kb on - strand, within GFF2945at 371.153 kb on + strand, within GFF2945at 371.334 kb on + strand, within GFF2945at 371.334 kb on + strand, within GFF2945at 371.337 kb on + strand, within GFF2945at 371.337 kb on + strand, within GFF2945at 371.337 kb on + strand, within GFF2945at 371.338 kb on - strand, within GFF2945at 371.338 kb on - strand, within GFF2945at 371.338 kb on - strand, within GFF2945at 371.519 kb on + strand, within GFF2946at 371.519 kb on + strand, within GFF2946at 371.519 kb on + strand, within GFF2946at 371.519 kb on + strand, within GFF2946at 371.519 kb on + strand, within GFF2946at 371.519 kb on + strand, within GFF2946at 371.520 kb on - strand, within GFF2946at 371.520 kb on - strand, within GFF2946at 371.520 kb on - strand, within GFF2946at 371.549 kb on + strand, within GFF2946at 371.549 kb on + strand, within GFF2946at 371.549 kb on + strand, within GFF2946at 371.549 kb on + strand, within GFF2946at 371.550 kb on - strand, within GFF2946at 371.550 kb on - strand, within GFF2946at 371.582 kb on + strand, within GFF2946at 371.582 kb on + strand, within GFF2946at 371.582 kb on + strand, within GFF2946at 371.582 kb on + strand, within GFF2946at 371.583 kb on - strand, within GFF2946at 371.583 kb on - strand, within GFF2946at 371.583 kb on - strand, within GFF2946at 371.615 kb on + strand, within GFF2946at 371.616 kb on - strand, within GFF2946at 371.681 kb on + strand, within GFF2946at 372.156 kb on - strand, within GFF2947at 372.156 kb on - strand, within GFF2947at 372.364 kb on + strandat 372.364 kb on + strandat 372.364 kb on + strandat 372.364 kb on + strandat 372.365 kb on - strandat 372.365 kb on - strandat 372.365 kb on - strandat 372.382 kb on + strandat 372.382 kb on + strandat 372.382 kb on + strandat 372.382 kb on + strandat 372.382 kb on + strandat 372.382 kb on + strandat 372.383 kb on - strandat 372.383 kb on - strandat 372.383 kb on - strandat 372.383 kb on - strandat 372.383 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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370,144 + GFF2943 0.67 -0.2
370,145 - GFF2943 0.67 -0.3
370,357 + -0.5
370,357 + -0.7
370,358 - -1.0
370,369 + -0.3
370,369 + +1.5
370,369 + +1.3
370,369 + -0.0
370,370 - -0.5
370,372 + -0.1
370,372 + +0.5
370,372 + +1.2
370,372 + +0.3
370,372 + -1.0
370,372 + -1.1
370,372 + -0.7
370,372 + -2.6
370,372 + -0.3
370,372 + +0.2
370,372 + -0.4
370,373 - -0.6
370,373 - -0.1
370,373 - -0.7
370,373 - +0.4
370,373 - +0.7
370,373 - -0.5
370,373 - -0.8
370,373 - +0.3
370,373 - -0.5
370,373 - -2.1
370,373 - +0.3
370,373 - -1.0
370,470 + -0.2
370,471 - -0.1
370,729 + GFF2944 0.51 -0.8
370,729 + GFF2944 0.51 -1.1
370,729 + GFF2944 0.51 -0.5
370,729 + GFF2944 0.51 -0.6
370,730 - GFF2944 0.51 -0.3
370,730 - GFF2944 0.51 -0.6
370,730 - GFF2944 0.51 -0.2
370,867 + GFF2944 0.78 +0.2
370,868 - GFF2944 0.78 +0.1
370,868 - GFF2944 0.78 +1.1
370,868 - GFF2944 0.78 -0.9
370,868 - GFF2944 0.78 -0.4
370,868 - GFF2944 0.78 +0.3
370,936 + -0.1
370,936 + -0.8
370,937 - +0.3
371,058 + GFF2945 0.15 +0.3
371,058 + GFF2945 0.15 +0.6
371,058 + GFF2945 0.15 -0.1
371,058 + GFF2945 0.15 -0.2
371,059 - GFF2945 0.15 -0.6
371,059 - GFF2945 0.15 -0.3
371,059 - GFF2945 0.15 +0.2
371,059 - GFF2945 0.15 -0.7
371,059 - GFF2945 0.15 +0.1
371,059 - GFF2945 0.15 -0.1
371,059 - GFF2945 0.15 +0.2
371,059 - GFF2945 0.15 +0.2
371,059 - GFF2945 0.15 -0.8
371,059 - GFF2945 0.15 -0.7
371,059 - GFF2945 0.15 +0.4
371,059 - GFF2945 0.15 -0.6
371,059 - GFF2945 0.15 +0.8
371,059 - GFF2945 0.15 -0.3
371,059 - GFF2945 0.15 +1.5
371,059 - GFF2945 0.15 -1.2
371,059 - GFF2945 0.15 -0.0
371,059 - GFF2945 0.15 -0.7
371,059 - GFF2945 0.15 -0.2
371,067 + GFF2945 0.17 -0.2
371,067 + GFF2945 0.17 -0.7
371,067 + GFF2945 0.17 -0.0
371,068 - GFF2945 0.17 +0.1
371,094 + GFF2945 0.24 -1.0
371,094 + GFF2945 0.24 +0.1
371,094 + GFF2945 0.24 -0.7
371,095 - GFF2945 0.24 -0.3
371,095 - GFF2945 0.24 -0.4
371,095 - GFF2945 0.24 +0.1
371,153 + GFF2945 0.39 -0.1
371,334 + GFF2945 0.85 +1.1
371,334 + GFF2945 0.85 -0.5
371,337 + GFF2945 0.86 -1.8
371,337 + GFF2945 0.86 +0.1
371,337 + GFF2945 0.86 +1.3
371,338 - GFF2945 0.86 -0.5
371,338 - GFF2945 0.86 +0.7
371,338 - GFF2945 0.86 +0.2
371,519 + GFF2946 0.32 +0.1
371,519 + GFF2946 0.32 -0.2
371,519 + GFF2946 0.32 -0.4
371,519 + GFF2946 0.32 -0.6
371,519 + GFF2946 0.32 +0.0
371,519 + GFF2946 0.32 +0.3
371,520 - GFF2946 0.32 +0.4
371,520 - GFF2946 0.32 -0.2
371,520 - GFF2946 0.32 -0.3
371,549 + GFF2946 0.39 +1.3
371,549 + GFF2946 0.39 -0.2
371,549 + GFF2946 0.39 -0.5
371,549 + GFF2946 0.39 -1.0
371,550 - GFF2946 0.40 +0.4
371,550 - GFF2946 0.40 -2.0
371,582 + GFF2946 0.47 -0.8
371,582 + GFF2946 0.47 +0.4
371,582 + GFF2946 0.47 -0.3
371,582 + GFF2946 0.47 +0.4
371,583 - GFF2946 0.48 -0.8
371,583 - GFF2946 0.48 -0.1
371,583 - GFF2946 0.48 +0.2
371,615 + GFF2946 0.55 +0.5
371,616 - GFF2946 0.56 -0.8
371,681 + GFF2946 0.72 +0.3
372,156 - GFF2947 0.59 -0.3
372,156 - GFF2947 0.59 +0.6
372,364 + +0.3
372,364 + +0.5
372,364 + +0.4
372,364 + -0.6
372,365 - -0.9
372,365 - +0.6
372,365 - -0.2
372,382 + -0.7
372,382 + -0.5
372,382 + -0.1
372,382 + -0.3
372,382 + +0.5
372,382 + -0.7
372,383 - -1.0
372,383 - -2.7
372,383 - -1.3
372,383 - -0.3
372,383 - +0.9

Or see this region's nucleotide sequence