Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2907 and GFF2908 are separated by 2 nucleotides GFF2908 and GFF2909 are separated by 38 nucleotides
GFF2907 - Glucarate dehydratase (EC 4.2.1.40), at 334,535 to 335,893
GFF2907
GFF2908 - BUG/TctC family periplasmic protein, at 335,896 to 336,897
GFF2908
GFF2909 - 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41), at 336,936 to 337,847
GFF2909
Position (kb) 335
336
337 Strain fitness (log2 ratio) -1
0
1 at 335.100 kb on + strand, within GFF2907 at 335.101 kb on - strand, within GFF2907 at 335.382 kb on + strand, within GFF2907 at 335.382 kb on + strand, within GFF2907 at 335.415 kb on + strand, within GFF2907 at 335.415 kb on + strand, within GFF2907 at 335.416 kb on - strand, within GFF2907 at 335.438 kb on + strand, within GFF2907 at 335.887 kb on + strand at 335.887 kb on + strand at 335.888 kb on - strand at 336.122 kb on + strand, within GFF2908 at 336.122 kb on + strand, within GFF2908 at 336.123 kb on - strand, within GFF2908 at 336.123 kb on - strand, within GFF2908 at 336.123 kb on - strand, within GFF2908 at 336.317 kb on + strand, within GFF2908 at 336.318 kb on - strand, within GFF2908 at 336.318 kb on - strand, within GFF2908 at 336.318 kb on - strand, within GFF2908 at 336.518 kb on + strand, within GFF2908 at 336.518 kb on + strand, within GFF2908 at 336.518 kb on + strand, within GFF2908 at 336.518 kb on + strand, within GFF2908 at 336.519 kb on - strand, within GFF2908 at 336.519 kb on - strand, within GFF2908 at 336.543 kb on - strand, within GFF2908 at 336.608 kb on + strand, within GFF2908 at 336.609 kb on - strand, within GFF2908 at 336.609 kb on - strand, within GFF2908 at 336.874 kb on - strand at 337.103 kb on - strand, within GFF2909 at 337.168 kb on + strand, within GFF2909 at 337.168 kb on + strand, within GFF2909 at 337.168 kb on + strand, within GFF2909 at 337.169 kb on - strand, within GFF2909 at 337.169 kb on - strand, within GFF2909 at 337.217 kb on - strand, within GFF2909 at 337.241 kb on - strand, within GFF2909 at 337.241 kb on - strand, within GFF2909 at 337.252 kb on + strand, within GFF2909 at 337.252 kb on + strand, within GFF2909 at 337.252 kb on + strand, within GFF2909 at 337.253 kb on - strand, within GFF2909 at 337.253 kb on - strand, within GFF2909 at 337.283 kb on - strand, within GFF2909 at 337.309 kb on + strand, within GFF2909 at 337.426 kb on + strand, within GFF2909 at 337.427 kb on - strand, within GFF2909 at 337.507 kb on + strand, within GFF2909 at 337.507 kb on + strand, within GFF2909 at 337.508 kb on - strand, within GFF2909 at 337.508 kb on - strand, within GFF2909 at 337.508 kb on - strand, within GFF2909 at 337.750 kb on + strand, within GFF2909 at 337.750 kb on + strand, within GFF2909 at 337.751 kb on - strand, within GFF2909 at 337.751 kb on - strand, within GFF2909
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 335,100 + GFF2907 0.42 -0.2 335,101 - GFF2907 0.42 -0.6 335,382 + GFF2907 0.62 -0.4 335,382 + GFF2907 0.62 +0.3 335,415 + GFF2907 0.65 +0.1 335,415 + GFF2907 0.65 -0.7 335,416 - GFF2907 0.65 +0.1 335,438 + GFF2907 0.66 -0.2 335,887 + +0.3 335,887 + +0.1 335,888 - +1.4 336,122 + GFF2908 0.23 -0.4 336,122 + GFF2908 0.23 -0.1 336,123 - GFF2908 0.23 +1.1 336,123 - GFF2908 0.23 +0.2 336,123 - GFF2908 0.23 -0.3 336,317 + GFF2908 0.42 +0.7 336,318 - GFF2908 0.42 +0.3 336,318 - GFF2908 0.42 -0.5 336,318 - GFF2908 0.42 +1.1 336,518 + GFF2908 0.62 +1.1 336,518 + GFF2908 0.62 -0.5 336,518 + GFF2908 0.62 -0.9 336,518 + GFF2908 0.62 -1.6 336,519 - GFF2908 0.62 -0.0 336,519 - GFF2908 0.62 -0.9 336,543 - GFF2908 0.65 -0.4 336,608 + GFF2908 0.71 +0.1 336,609 - GFF2908 0.71 -0.2 336,609 - GFF2908 0.71 +0.5 336,874 - -0.4 337,103 - GFF2909 0.18 -0.3 337,168 + GFF2909 0.25 +0.3 337,168 + GFF2909 0.25 +0.6 337,168 + GFF2909 0.25 -0.3 337,169 - GFF2909 0.26 -1.7 337,169 - GFF2909 0.26 +0.0 337,217 - GFF2909 0.31 +0.4 337,241 - GFF2909 0.33 -0.7 337,241 - GFF2909 0.33 -0.4 337,252 + GFF2909 0.35 -1.1 337,252 + GFF2909 0.35 +0.9 337,252 + GFF2909 0.35 +0.7 337,253 - GFF2909 0.35 -0.6 337,253 - GFF2909 0.35 -0.4 337,283 - GFF2909 0.38 -1.1 337,309 + GFF2909 0.41 -0.3 337,426 + GFF2909 0.54 +0.3 337,427 - GFF2909 0.54 -0.2 337,507 + GFF2909 0.63 +0.3 337,507 + GFF2909 0.63 -0.1 337,508 - GFF2909 0.63 -0.3 337,508 - GFF2909 0.63 +0.7 337,508 - GFF2909 0.63 -0.5 337,750 + GFF2909 0.89 +0.9 337,750 + GFF2909 0.89 -1.2 337,751 - GFF2909 0.89 +0.2 337,751 - GFF2909 0.89 -0.1
Or see this region's nucleotide sequence