Strain Fitness in Variovorax sp. SCN45 around GFF2891

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2889 and GFF2890 overlap by 4 nucleotidesGFF2890 and GFF2891 are separated by 0 nucleotidesGFF2891 and GFF2892 are separated by 142 nucleotides GFF2889 - ABC transporter, ATP-binding protein 1 (cluster 4, leucine/isoleucine/valine/benzoate), at 314,730 to 315,491 GFF2889 GFF2890 - ABC transporter, permease protein 2 (cluster 4, leucine/isoleucine/valine/benzoate), at 315,488 to 316,486 GFF2890 GFF2891 - ABC transporter, permease protein 1 (cluster 4, leucine/isoleucine/valine/benzoate), at 316,487 to 317,359 GFF2891 GFF2892 - ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate), at 317,502 to 318,674 GFF2892 Position (kb) 316 317 318Strain fitness (log2 ratio) -2 -1 0 1 2at 315.603 kb on + strand, within GFF2890at 315.603 kb on + strand, within GFF2890at 315.604 kb on - strand, within GFF2890at 315.673 kb on - strand, within GFF2890at 315.813 kb on + strand, within GFF2890at 315.813 kb on + strand, within GFF2890at 315.813 kb on + strand, within GFF2890at 315.814 kb on - strand, within GFF2890at 315.814 kb on - strand, within GFF2890at 315.814 kb on - strand, within GFF2890at 315.814 kb on - strand, within GFF2890at 315.814 kb on - strand, within GFF2890at 315.960 kb on + strand, within GFF2890at 315.961 kb on - strand, within GFF2890at 315.981 kb on + strand, within GFF2890at 315.982 kb on - strand, within GFF2890at 316.246 kb on - strand, within GFF2890at 316.297 kb on - strand, within GFF2890at 316.297 kb on - strand, within GFF2890at 316.555 kb on - strandat 316.555 kb on - strandat 316.587 kb on + strand, within GFF2891at 316.587 kb on + strand, within GFF2891at 316.587 kb on + strand, within GFF2891at 316.587 kb on + strand, within GFF2891at 316.588 kb on - strand, within GFF2891at 316.588 kb on - strand, within GFF2891at 316.588 kb on - strand, within GFF2891at 316.588 kb on - strand, within GFF2891at 316.588 kb on - strand, within GFF2891at 316.588 kb on - strand, within GFF2891at 316.683 kb on + strand, within GFF2891at 316.683 kb on + strand, within GFF2891at 316.683 kb on + strand, within GFF2891at 316.683 kb on + strand, within GFF2891at 316.684 kb on - strand, within GFF2891at 316.684 kb on - strand, within GFF2891at 316.692 kb on + strand, within GFF2891at 316.692 kb on + strand, within GFF2891at 316.692 kb on + strand, within GFF2891at 316.692 kb on + strand, within GFF2891at 316.692 kb on + strand, within GFF2891at 316.692 kb on + strand, within GFF2891at 316.693 kb on - strand, within GFF2891at 316.693 kb on - strand, within GFF2891at 316.693 kb on - strand, within GFF2891at 316.693 kb on - strand, within GFF2891at 316.693 kb on - strand, within GFF2891at 316.693 kb on - strand, within GFF2891at 316.935 kb on + strand, within GFF2891at 317.034 kb on + strand, within GFF2891at 317.035 kb on - strand, within GFF2891at 317.035 kb on - strand, within GFF2891at 317.035 kb on - strand, within GFF2891at 317.107 kb on - strand, within GFF2891at 317.107 kb on - strand, within GFF2891at 317.107 kb on - strand, within GFF2891at 317.107 kb on - strand, within GFF2891at 317.119 kb on - strand, within GFF2891at 317.119 kb on - strand, within GFF2891at 317.226 kb on + strand, within GFF2891at 317.226 kb on + strand, within GFF2891at 317.227 kb on - strand, within GFF2891at 317.366 kb on + strandat 317.366 kb on + strandat 317.366 kb on + strandat 317.366 kb on + strandat 317.366 kb on + strandat 317.367 kb on - strandat 317.367 kb on - strandat 317.504 kb on - strandat 317.557 kb on + strandat 317.557 kb on + strandat 317.557 kb on + strandat 317.557 kb on + strandat 317.558 kb on - strandat 317.558 kb on - strandat 317.558 kb on - strandat 317.558 kb on - strandat 317.558 kb on - strandat 317.576 kb on - strandat 317.593 kb on + strandat 317.593 kb on + strandat 317.593 kb on + strandat 317.594 kb on - strandat 317.594 kb on - strandat 317.594 kb on - strandat 317.728 kb on + strand, within GFF2892at 317.729 kb on - strand, within GFF2892at 317.749 kb on + strand, within GFF2892at 317.750 kb on - strand, within GFF2892at 317.848 kb on + strand, within GFF2892at 317.848 kb on + strand, within GFF2892at 317.848 kb on + strand, within GFF2892at 317.848 kb on + strand, within GFF2892at 317.848 kb on + strand, within GFF2892at 317.848 kb on + strand, within GFF2892at 317.848 kb on + strand, within GFF2892at 317.849 kb on - strand, within GFF2892at 317.849 kb on - strand, within GFF2892at 317.849 kb on - strand, within GFF2892at 318.164 kb on - strand, within GFF2892at 318.265 kb on + strand, within GFF2892at 318.265 kb on + strand, within GFF2892at 318.265 kb on + strand, within GFF2892at 318.265 kb on + strand, within GFF2892at 318.265 kb on + strand, within GFF2892at 318.266 kb on - strand, within GFF2892at 318.266 kb on - strand, within GFF2892at 318.266 kb on - strand, within GFF2892at 318.266 kb on - strand, within GFF2892

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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315,603 + GFF2890 0.12 -0.4
315,603 + GFF2890 0.12 +0.1
315,604 - GFF2890 0.12 -0.7
315,673 - GFF2890 0.19 -1.2
315,813 + GFF2890 0.33 -0.2
315,813 + GFF2890 0.33 -0.0
315,813 + GFF2890 0.33 +0.0
315,814 - GFF2890 0.33 -0.3
315,814 - GFF2890 0.33 -0.1
315,814 - GFF2890 0.33 -0.1
315,814 - GFF2890 0.33 -0.9
315,814 - GFF2890 0.33 -0.6
315,960 + GFF2890 0.47 -0.1
315,961 - GFF2890 0.47 +1.2
315,981 + GFF2890 0.49 -0.0
315,982 - GFF2890 0.49 -0.2
316,246 - GFF2890 0.76 +0.1
316,297 - GFF2890 0.81 -0.7
316,297 - GFF2890 0.81 +1.9
316,555 - -0.5
316,555 - -0.4
316,587 + GFF2891 0.11 +0.3
316,587 + GFF2891 0.11 +0.9
316,587 + GFF2891 0.11 -1.9
316,587 + GFF2891 0.11 +0.3
316,588 - GFF2891 0.12 -0.1
316,588 - GFF2891 0.12 -0.4
316,588 - GFF2891 0.12 +0.1
316,588 - GFF2891 0.12 +0.0
316,588 - GFF2891 0.12 -2.1
316,588 - GFF2891 0.12 +0.7
316,683 + GFF2891 0.22 -0.4
316,683 + GFF2891 0.22 -1.2
316,683 + GFF2891 0.22 -0.3
316,683 + GFF2891 0.22 -0.9
316,684 - GFF2891 0.23 -0.4
316,684 - GFF2891 0.23 -1.7
316,692 + GFF2891 0.23 -0.4
316,692 + GFF2891 0.23 +0.2
316,692 + GFF2891 0.23 +0.0
316,692 + GFF2891 0.23 -0.6
316,692 + GFF2891 0.23 +0.2
316,692 + GFF2891 0.23 +0.4
316,693 - GFF2891 0.24 -0.2
316,693 - GFF2891 0.24 -0.4
316,693 - GFF2891 0.24 +1.4
316,693 - GFF2891 0.24 -0.9
316,693 - GFF2891 0.24 -0.8
316,693 - GFF2891 0.24 -0.1
316,935 + GFF2891 0.51 -0.1
317,034 + GFF2891 0.63 +0.3
317,035 - GFF2891 0.63 -0.9
317,035 - GFF2891 0.63 -0.8
317,035 - GFF2891 0.63 -0.2
317,107 - GFF2891 0.71 -0.3
317,107 - GFF2891 0.71 +0.4
317,107 - GFF2891 0.71 +0.7
317,107 - GFF2891 0.71 +1.9
317,119 - GFF2891 0.72 -1.4
317,119 - GFF2891 0.72 -0.2
317,226 + GFF2891 0.85 +0.3
317,226 + GFF2891 0.85 +0.3
317,227 - GFF2891 0.85 -1.2
317,366 + +0.0
317,366 + +0.1
317,366 + -0.3
317,366 + -0.1
317,366 + -0.4
317,367 - -0.5
317,367 - +1.4
317,504 - +1.9
317,557 + -0.4
317,557 + +0.5
317,557 + -0.7
317,557 + +1.9
317,558 - -0.7
317,558 - +1.9
317,558 - -1.7
317,558 - -0.3
317,558 - +0.4
317,576 - +1.0
317,593 + +0.5
317,593 + +0.0
317,593 + -0.7
317,594 - +1.5
317,594 - -0.4
317,594 - -0.1
317,728 + GFF2892 0.19 -0.1
317,729 - GFF2892 0.19 -0.6
317,749 + GFF2892 0.21 +0.5
317,750 - GFF2892 0.21 -0.1
317,848 + GFF2892 0.29 -0.1
317,848 + GFF2892 0.29 -0.7
317,848 + GFF2892 0.29 +1.6
317,848 + GFF2892 0.29 +0.0
317,848 + GFF2892 0.29 -1.0
317,848 + GFF2892 0.29 -0.8
317,848 + GFF2892 0.29 +0.3
317,849 - GFF2892 0.30 -0.1
317,849 - GFF2892 0.30 -0.2
317,849 - GFF2892 0.30 -0.9
318,164 - GFF2892 0.56 -0.5
318,265 + GFF2892 0.65 -0.3
318,265 + GFF2892 0.65 +0.1
318,265 + GFF2892 0.65 -0.4
318,265 + GFF2892 0.65 +1.5
318,265 + GFF2892 0.65 -1.3
318,266 - GFF2892 0.65 +0.3
318,266 - GFF2892 0.65 +0.3
318,266 - GFF2892 0.65 -0.4
318,266 - GFF2892 0.65 +0.3

Or see this region's nucleotide sequence