Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2883 and GFF2884 overlap by 4 nucleotides GFF2884 and GFF2885 are separated by 101 nucleotides
GFF2883 - CaiB/BaiF family protein, at 309,100 to 310,305
GFF2883
GFF2884 - Pyruvate:Oxaloacetate transcarboxylase domain protein, at 310,302 to 311,249
GFF2884
GFF2885 - Transcriptional regulator, LysR family, at 311,351 to 312,253
GFF2885
Position (kb) 310
311
312 Strain fitness (log2 ratio) -1
0
1 at 309.335 kb on + strand, within GFF2883 at 309.335 kb on + strand, within GFF2883 at 309.335 kb on + strand, within GFF2883 at 309.335 kb on + strand, within GFF2883 at 309.587 kb on - strand, within GFF2883 at 309.587 kb on - strand, within GFF2883 at 309.602 kb on + strand, within GFF2883 at 309.602 kb on + strand, within GFF2883 at 309.603 kb on - strand, within GFF2883 at 309.603 kb on - strand, within GFF2883 at 309.603 kb on - strand, within GFF2883 at 309.603 kb on - strand, within GFF2883 at 309.603 kb on - strand, within GFF2883 at 309.603 kb on - strand, within GFF2883 at 309.662 kb on + strand, within GFF2883 at 309.662 kb on + strand, within GFF2883 at 309.663 kb on - strand, within GFF2883 at 309.663 kb on - strand, within GFF2883 at 309.852 kb on - strand, within GFF2883 at 309.852 kb on - strand, within GFF2883 at 309.852 kb on - strand, within GFF2883 at 309.852 kb on - strand, within GFF2883 at 309.852 kb on - strand, within GFF2883 at 309.852 kb on - strand, within GFF2883 at 309.852 kb on - strand, within GFF2883 at 309.852 kb on - strand, within GFF2883 at 309.938 kb on + strand, within GFF2883 at 309.938 kb on + strand, within GFF2883 at 309.938 kb on + strand, within GFF2883 at 309.938 kb on + strand, within GFF2883 at 309.938 kb on + strand, within GFF2883 at 309.938 kb on + strand, within GFF2883 at 309.938 kb on + strand, within GFF2883 at 309.939 kb on - strand, within GFF2883 at 309.939 kb on - strand, within GFF2883 at 309.939 kb on - strand, within GFF2883 at 309.939 kb on - strand, within GFF2883 at 309.939 kb on - strand, within GFF2883 at 309.939 kb on - strand, within GFF2883 at 309.939 kb on - strand, within GFF2883 at 309.939 kb on - strand, within GFF2883 at 309.939 kb on - strand, within GFF2883 at 309.939 kb on - strand, within GFF2883 at 309.986 kb on + strand, within GFF2883 at 309.986 kb on + strand, within GFF2883 at 309.986 kb on + strand, within GFF2883 at 309.986 kb on + strand, within GFF2883 at 309.986 kb on + strand, within GFF2883 at 309.986 kb on + strand, within GFF2883 at 309.987 kb on - strand, within GFF2883 at 309.987 kb on - strand, within GFF2883 at 309.987 kb on - strand, within GFF2883 at 309.987 kb on - strand, within GFF2883 at 309.987 kb on - strand, within GFF2883 at 309.987 kb on - strand, within GFF2883 at 309.989 kb on + strand, within GFF2883 at 310.299 kb on + strand at 310.299 kb on + strand at 310.300 kb on - strand at 310.300 kb on - strand at 310.300 kb on - strand at 310.300 kb on - strand at 310.300 kb on - strand at 310.560 kb on + strand, within GFF2884 at 310.560 kb on + strand, within GFF2884 at 310.560 kb on + strand, within GFF2884 at 310.560 kb on + strand, within GFF2884 at 310.561 kb on - strand, within GFF2884 at 310.561 kb on - strand, within GFF2884 at 310.561 kb on - strand, within GFF2884 at 310.561 kb on - strand, within GFF2884 at 310.561 kb on - strand, within GFF2884 at 310.561 kb on - strand, within GFF2884 at 310.561 kb on - strand, within GFF2884 at 310.561 kb on - strand, within GFF2884 at 310.576 kb on + strand, within GFF2884 at 310.576 kb on + strand, within GFF2884 at 310.577 kb on - strand, within GFF2884 at 310.577 kb on - strand, within GFF2884 at 310.577 kb on - strand, within GFF2884 at 311.038 kb on + strand, within GFF2884 at 311.038 kb on + strand, within GFF2884 at 311.039 kb on - strand, within GFF2884 at 311.273 kb on + strand at 311.274 kb on - strand at 311.287 kb on + strand at 311.287 kb on + strand at 311.287 kb on + strand at 311.288 kb on - strand at 311.288 kb on - strand at 311.288 kb on - strand at 311.313 kb on + strand at 311.612 kb on + strand, within GFF2885 at 311.613 kb on - strand, within GFF2885 at 311.613 kb on - strand, within GFF2885 at 311.722 kb on + strand, within GFF2885 at 311.723 kb on - strand, within GFF2885 at 311.843 kb on + strand, within GFF2885 at 311.843 kb on + strand, within GFF2885 at 311.843 kb on + strand, within GFF2885 at 311.844 kb on - strand, within GFF2885 at 311.844 kb on - strand, within GFF2885 at 312.119 kb on + strand, within GFF2885 at 312.119 kb on + strand, within GFF2885
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 309,335 + GFF2883 0.19 -0.7 309,335 + GFF2883 0.19 -0.1 309,335 + GFF2883 0.19 +0.2 309,335 + GFF2883 0.19 +0.9 309,587 - GFF2883 0.40 +0.5 309,587 - GFF2883 0.40 +0.6 309,602 + GFF2883 0.42 -1.2 309,602 + GFF2883 0.42 -0.4 309,603 - GFF2883 0.42 +0.9 309,603 - GFF2883 0.42 +0.2 309,603 - GFF2883 0.42 +0.4 309,603 - GFF2883 0.42 +0.3 309,603 - GFF2883 0.42 -1.1 309,603 - GFF2883 0.42 +0.2 309,662 + GFF2883 0.47 -1.4 309,662 + GFF2883 0.47 -0.4 309,663 - GFF2883 0.47 -0.3 309,663 - GFF2883 0.47 -0.5 309,852 - GFF2883 0.62 -0.9 309,852 - GFF2883 0.62 -1.0 309,852 - GFF2883 0.62 -0.5 309,852 - GFF2883 0.62 -0.5 309,852 - GFF2883 0.62 -1.4 309,852 - GFF2883 0.62 +0.1 309,852 - GFF2883 0.62 +0.9 309,852 - GFF2883 0.62 +0.7 309,938 + GFF2883 0.69 -0.5 309,938 + GFF2883 0.69 -0.5 309,938 + GFF2883 0.69 -0.5 309,938 + GFF2883 0.69 -0.1 309,938 + GFF2883 0.69 -0.8 309,938 + GFF2883 0.69 +0.5 309,938 + GFF2883 0.69 -0.3 309,939 - GFF2883 0.70 +0.1 309,939 - GFF2883 0.70 -0.2 309,939 - GFF2883 0.70 +0.0 309,939 - GFF2883 0.70 -0.6 309,939 - GFF2883 0.70 +1.2 309,939 - GFF2883 0.70 -0.3 309,939 - GFF2883 0.70 -0.3 309,939 - GFF2883 0.70 +0.2 309,939 - GFF2883 0.70 -0.8 309,939 - GFF2883 0.70 -0.4 309,986 + GFF2883 0.73 -0.4 309,986 + GFF2883 0.73 +0.5 309,986 + GFF2883 0.73 -0.2 309,986 + GFF2883 0.73 +1.1 309,986 + GFF2883 0.73 +1.3 309,986 + GFF2883 0.73 -0.2 309,987 - GFF2883 0.74 +1.2 309,987 - GFF2883 0.74 +0.3 309,987 - GFF2883 0.74 -0.6 309,987 - GFF2883 0.74 +0.1 309,987 - GFF2883 0.74 -1.0 309,987 - GFF2883 0.74 -1.2 309,989 + GFF2883 0.74 +0.1 310,299 + +1.5 310,299 + +1.1 310,300 - -0.7 310,300 - +0.5 310,300 - +0.3 310,300 - -0.3 310,300 - -0.8 310,560 + GFF2884 0.27 +1.2 310,560 + GFF2884 0.27 -1.2 310,560 + GFF2884 0.27 +0.3 310,560 + GFF2884 0.27 -1.3 310,561 - GFF2884 0.27 -0.4 310,561 - GFF2884 0.27 -0.5 310,561 - GFF2884 0.27 -1.4 310,561 - GFF2884 0.27 +0.9 310,561 - GFF2884 0.27 -1.5 310,561 - GFF2884 0.27 +0.5 310,561 - GFF2884 0.27 +0.7 310,561 - GFF2884 0.27 -0.2 310,576 + GFF2884 0.29 -0.8 310,576 + GFF2884 0.29 -0.4 310,577 - GFF2884 0.29 +0.1 310,577 - GFF2884 0.29 -1.0 310,577 - GFF2884 0.29 -1.1 311,038 + GFF2884 0.78 -1.1 311,038 + GFF2884 0.78 -0.5 311,039 - GFF2884 0.78 -0.4 311,273 + +1.3 311,274 - -0.3 311,287 + +0.2 311,287 + -0.1 311,287 + -0.1 311,288 - -0.1 311,288 - -0.2 311,288 - +0.2 311,313 + -0.5 311,612 + GFF2885 0.29 -0.2 311,613 - GFF2885 0.29 -1.6 311,613 - GFF2885 0.29 +0.1 311,722 + GFF2885 0.41 -0.4 311,723 - GFF2885 0.41 -0.5 311,843 + GFF2885 0.54 +1.2 311,843 + GFF2885 0.54 -0.7 311,843 + GFF2885 0.54 +0.7 311,844 - GFF2885 0.55 +0.9 311,844 - GFF2885 0.55 +0.0 312,119 + GFF2885 0.85 -0.1 312,119 + GFF2885 0.85 +0.9
Or see this region's nucleotide sequence