Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2863 and GFF2864 are separated by 8 nucleotides GFF2864 and GFF2865 are separated by 14 nucleotides GFF2865 and GFF2866 are separated by 112 nucleotides
GFF2863 - no description, at 286,763 to 287,440
GFF2863
GFF2864 - no description, at 287,449 to 287,967
GFF2864
GFF2865 - Uncharacterized MFS-type transporter, at 287,982 to 289,511
GFF2865
GFF2866 - Uncharacterized MFS-type transporter, at 289,624 to 290,787
GFF2866
Position (kb) 287
288
289
290 Strain fitness (log2 ratio) -2
-1
0
1
2 at 287.031 kb on + strand, within GFF2863 at 287.031 kb on + strand, within GFF2863 at 287.031 kb on + strand, within GFF2863 at 287.031 kb on + strand, within GFF2863 at 287.073 kb on + strand, within GFF2863 at 287.073 kb on + strand, within GFF2863 at 287.073 kb on + strand, within GFF2863 at 287.073 kb on + strand, within GFF2863 at 287.073 kb on + strand, within GFF2863 at 287.073 kb on + strand, within GFF2863 at 287.073 kb on + strand, within GFF2863 at 287.073 kb on + strand, within GFF2863 at 287.074 kb on - strand, within GFF2863 at 287.074 kb on - strand, within GFF2863 at 287.074 kb on - strand, within GFF2863 at 287.074 kb on - strand, within GFF2863 at 287.074 kb on - strand, within GFF2863 at 287.074 kb on - strand, within GFF2863 at 287.074 kb on - strand, within GFF2863 at 287.074 kb on - strand, within GFF2863 at 287.074 kb on - strand, within GFF2863 at 287.223 kb on + strand, within GFF2863 at 287.223 kb on + strand, within GFF2863 at 287.223 kb on + strand, within GFF2863 at 287.223 kb on + strand, within GFF2863 at 287.223 kb on + strand, within GFF2863 at 287.223 kb on + strand, within GFF2863 at 287.224 kb on - strand, within GFF2863 at 287.224 kb on - strand, within GFF2863 at 287.224 kb on - strand, within GFF2863 at 287.229 kb on + strand, within GFF2863 at 287.229 kb on + strand, within GFF2863 at 287.229 kb on + strand, within GFF2863 at 287.229 kb on + strand, within GFF2863 at 287.229 kb on + strand, within GFF2863 at 287.229 kb on + strand, within GFF2863 at 287.229 kb on + strand, within GFF2863 at 287.229 kb on + strand, within GFF2863 at 287.229 kb on + strand, within GFF2863 at 287.229 kb on + strand, within GFF2863 at 287.229 kb on + strand, within GFF2863 at 287.229 kb on + strand, within GFF2863 at 287.229 kb on + strand, within GFF2863 at 287.229 kb on + strand, within GFF2863 at 287.229 kb on + strand, within GFF2863 at 287.229 kb on + strand, within GFF2863 at 287.229 kb on + strand, within GFF2863 at 287.230 kb on - strand, within GFF2863 at 287.230 kb on - strand, within GFF2863 at 287.230 kb on - strand, within GFF2863 at 287.230 kb on - strand, within GFF2863 at 287.230 kb on - strand, within GFF2863 at 287.230 kb on - strand, within GFF2863 at 287.230 kb on - strand, within GFF2863 at 287.230 kb on - strand, within GFF2863 at 287.230 kb on - strand, within GFF2863 at 287.230 kb on - strand, within GFF2863 at 287.230 kb on - strand, within GFF2863 at 287.230 kb on - strand, within GFF2863 at 287.230 kb on - strand, within GFF2863 at 287.230 kb on - strand, within GFF2863 at 287.230 kb on - strand, within GFF2863 at 287.230 kb on - strand, within GFF2863 at 287.230 kb on - strand, within GFF2863 at 287.230 kb on - strand, within GFF2863 at 287.230 kb on - strand, within GFF2863 at 287.230 kb on - strand, within GFF2863 at 287.230 kb on - strand, within GFF2863 at 287.230 kb on - strand, within GFF2863 at 287.230 kb on - strand, within GFF2863 at 287.603 kb on - strand, within GFF2864 at 287.603 kb on - strand, within GFF2864 at 287.603 kb on - strand, within GFF2864 at 287.603 kb on - strand, within GFF2864 at 287.603 kb on - strand, within GFF2864 at 287.664 kb on + strand, within GFF2864 at 287.664 kb on + strand, within GFF2864 at 287.664 kb on + strand, within GFF2864 at 287.664 kb on + strand, within GFF2864 at 287.664 kb on + strand, within GFF2864 at 287.664 kb on + strand, within GFF2864 at 287.664 kb on + strand, within GFF2864 at 287.664 kb on + strand, within GFF2864 at 287.664 kb on + strand, within GFF2864 at 287.664 kb on + strand, within GFF2864 at 287.664 kb on + strand, within GFF2864 at 287.664 kb on + strand, within GFF2864 at 287.665 kb on - strand, within GFF2864 at 287.665 kb on - strand, within GFF2864 at 287.665 kb on - strand, within GFF2864 at 287.665 kb on - strand, within GFF2864 at 287.954 kb on + strand at 287.954 kb on + strand at 287.954 kb on + strand at 287.954 kb on + strand at 287.954 kb on + strand at 287.954 kb on + strand at 287.954 kb on + strand at 287.954 kb on + strand at 287.955 kb on - strand at 287.955 kb on - strand at 287.955 kb on - strand at 287.955 kb on - strand at 287.955 kb on - strand at 287.955 kb on - strand at 287.955 kb on - strand at 287.955 kb on - strand at 287.955 kb on - strand at 287.955 kb on - strand at 287.955 kb on - strand at 287.955 kb on - strand at 288.430 kb on + strand, within GFF2865 at 288.430 kb on + strand, within GFF2865 at 288.430 kb on + strand, within GFF2865 at 288.431 kb on - strand, within GFF2865 at 288.485 kb on + strand, within GFF2865 at 288.485 kb on + strand, within GFF2865 at 288.485 kb on + strand, within GFF2865 at 288.485 kb on + strand, within GFF2865 at 288.485 kb on + strand, within GFF2865 at 288.485 kb on + strand, within GFF2865 at 288.485 kb on + strand, within GFF2865 at 288.486 kb on - strand, within GFF2865 at 288.486 kb on - strand, within GFF2865 at 288.486 kb on - strand, within GFF2865 at 288.486 kb on - strand, within GFF2865 at 288.486 kb on - strand, within GFF2865 at 288.486 kb on - strand, within GFF2865 at 288.486 kb on - strand, within GFF2865 at 288.486 kb on - strand, within GFF2865 at 288.486 kb on - strand, within GFF2865 at 288.486 kb on - strand, within GFF2865 at 288.486 kb on - strand, within GFF2865 at 288.486 kb on - strand, within GFF2865 at 288.487 kb on + strand, within GFF2865 at 288.487 kb on + strand, within GFF2865 at 288.655 kb on + strand, within GFF2865 at 288.655 kb on + strand, within GFF2865 at 288.853 kb on + strand, within GFF2865 at 288.853 kb on + strand, within GFF2865 at 288.853 kb on + strand, within GFF2865 at 288.853 kb on + strand, within GFF2865 at 288.853 kb on + strand, within GFF2865 at 288.853 kb on + strand, within GFF2865 at 288.853 kb on + strand, within GFF2865 at 288.853 kb on + strand, within GFF2865 at 288.854 kb on - strand, within GFF2865 at 288.854 kb on - strand, within GFF2865 at 288.854 kb on - strand, within GFF2865 at 288.854 kb on - strand, within GFF2865 at 288.881 kb on + strand, within GFF2865 at 288.881 kb on + strand, within GFF2865 at 288.881 kb on + strand, within GFF2865 at 288.882 kb on - strand, within GFF2865 at 288.882 kb on - strand, within GFF2865 at 288.882 kb on - strand, within GFF2865 at 289.279 kb on + strand, within GFF2865 at 289.279 kb on + strand, within GFF2865 at 289.279 kb on + strand, within GFF2865 at 289.279 kb on + strand, within GFF2865 at 289.279 kb on + strand, within GFF2865 at 289.279 kb on + strand, within GFF2865 at 289.280 kb on - strand, within GFF2865 at 289.280 kb on - strand, within GFF2865 at 289.280 kb on - strand, within GFF2865 at 289.280 kb on - strand, within GFF2865 at 289.280 kb on - strand, within GFF2865 at 289.333 kb on + strand, within GFF2865 at 289.333 kb on + strand, within GFF2865 at 289.333 kb on + strand, within GFF2865 at 289.333 kb on + strand, within GFF2865 at 289.334 kb on - strand, within GFF2865 at 289.334 kb on - strand, within GFF2865 at 289.334 kb on - strand, within GFF2865 at 289.334 kb on - strand, within GFF2865 at 289.334 kb on - strand, within GFF2865 at 289.334 kb on - strand, within GFF2865 at 289.447 kb on + strand at 289.447 kb on + strand at 289.447 kb on + strand at 289.447 kb on + strand at 289.448 kb on - strand at 289.448 kb on - strand at 289.448 kb on - strand at 289.499 kb on + strand at 289.499 kb on + strand at 289.499 kb on + strand at 289.499 kb on + strand at 289.500 kb on - strand at 289.500 kb on - strand at 289.500 kb on - strand at 289.500 kb on - strand at 289.546 kb on - strand at 289.546 kb on - strand at 289.563 kb on + strand at 289.564 kb on - strand at 289.564 kb on - strand at 289.564 kb on - strand at 289.644 kb on + strand at 289.644 kb on + strand at 289.644 kb on + strand at 289.644 kb on + strand at 289.644 kb on + strand at 289.644 kb on + strand at 289.644 kb on + strand at 289.644 kb on + strand at 289.644 kb on + strand at 289.644 kb on + strand at 289.645 kb on - strand at 289.645 kb on - strand at 289.645 kb on - strand at 289.645 kb on - strand at 289.645 kb on - strand at 289.910 kb on + strand, within GFF2866 at 289.910 kb on + strand, within GFF2866 at 289.911 kb on - strand, within GFF2866 at 289.911 kb on - strand, within GFF2866 at 289.911 kb on - strand, within GFF2866
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 287,031 + GFF2863 0.40 +0.9 287,031 + GFF2863 0.40 -0.5 287,031 + GFF2863 0.40 -0.7 287,031 + GFF2863 0.40 -0.4 287,073 + GFF2863 0.46 -2.1 287,073 + GFF2863 0.46 +1.9 287,073 + GFF2863 0.46 +1.9 287,073 + GFF2863 0.46 -0.0 287,073 + GFF2863 0.46 -0.5 287,073 + GFF2863 0.46 +0.3 287,073 + GFF2863 0.46 -0.5 287,073 + GFF2863 0.46 +0.3 287,074 - GFF2863 0.46 +1.2 287,074 - GFF2863 0.46 +0.3 287,074 - GFF2863 0.46 -0.1 287,074 - GFF2863 0.46 +0.7 287,074 - GFF2863 0.46 -0.3 287,074 - GFF2863 0.46 -0.6 287,074 - GFF2863 0.46 -0.2 287,074 - GFF2863 0.46 +0.7 287,074 - GFF2863 0.46 +0.1 287,223 + GFF2863 0.68 -0.3 287,223 + GFF2863 0.68 +0.3 287,223 + GFF2863 0.68 +0.2 287,223 + GFF2863 0.68 -0.3 287,223 + GFF2863 0.68 +0.8 287,223 + GFF2863 0.68 +0.1 287,224 - GFF2863 0.68 +1.2 287,224 - GFF2863 0.68 +0.3 287,224 - GFF2863 0.68 -0.0 287,229 + GFF2863 0.69 -1.2 287,229 + GFF2863 0.69 +0.8 287,229 + GFF2863 0.69 +0.9 287,229 + GFF2863 0.69 -1.1 287,229 + GFF2863 0.69 +1.4 287,229 + GFF2863 0.69 -0.4 287,229 + GFF2863 0.69 -0.2 287,229 + GFF2863 0.69 -1.1 287,229 + GFF2863 0.69 +2.5 287,229 + GFF2863 0.69 +0.1 287,229 + GFF2863 0.69 -1.1 287,229 + GFF2863 0.69 +0.9 287,229 + GFF2863 0.69 -0.1 287,229 + GFF2863 0.69 +0.6 287,229 + GFF2863 0.69 -0.4 287,229 + GFF2863 0.69 -0.2 287,229 + GFF2863 0.69 -1.8 287,230 - GFF2863 0.69 -0.2 287,230 - GFF2863 0.69 +0.2 287,230 - GFF2863 0.69 +0.2 287,230 - GFF2863 0.69 +0.3 287,230 - GFF2863 0.69 +0.1 287,230 - GFF2863 0.69 -0.4 287,230 - GFF2863 0.69 +0.3 287,230 - GFF2863 0.69 -1.2 287,230 - GFF2863 0.69 +0.3 287,230 - GFF2863 0.69 +0.0 287,230 - GFF2863 0.69 -0.1 287,230 - GFF2863 0.69 -1.1 287,230 - GFF2863 0.69 -0.4 287,230 - GFF2863 0.69 +0.3 287,230 - GFF2863 0.69 -0.6 287,230 - GFF2863 0.69 -0.7 287,230 - GFF2863 0.69 -1.8 287,230 - GFF2863 0.69 +0.2 287,230 - GFF2863 0.69 -0.3 287,230 - GFF2863 0.69 -0.1 287,230 - GFF2863 0.69 +0.3 287,230 - GFF2863 0.69 -2.0 287,230 - GFF2863 0.69 +0.6 287,603 - GFF2864 0.30 +1.9 287,603 - GFF2864 0.30 +0.1 287,603 - GFF2864 0.30 +0.9 287,603 - GFF2864 0.30 +0.7 287,603 - GFF2864 0.30 -0.7 287,664 + GFF2864 0.41 -0.4 287,664 + GFF2864 0.41 -0.7 287,664 + GFF2864 0.41 -0.1 287,664 + GFF2864 0.41 +0.6 287,664 + GFF2864 0.41 +0.6 287,664 + GFF2864 0.41 +0.0 287,664 + GFF2864 0.41 +0.4 287,664 + GFF2864 0.41 -0.7 287,664 + GFF2864 0.41 -1.1 287,664 + GFF2864 0.41 -0.6 287,664 + GFF2864 0.41 -0.1 287,664 + GFF2864 0.41 +0.1 287,665 - GFF2864 0.42 +0.3 287,665 - GFF2864 0.42 +0.1 287,665 - GFF2864 0.42 -0.2 287,665 - GFF2864 0.42 +0.3 287,954 + +0.2 287,954 + -0.7 287,954 + -0.5 287,954 + +0.0 287,954 + +0.6 287,954 + -0.4 287,954 + -0.3 287,954 + -1.1 287,955 - +1.2 287,955 - +0.5 287,955 - +0.5 287,955 - -0.6 287,955 - +1.1 287,955 - -0.1 287,955 - +0.1 287,955 - -0.1 287,955 - -0.7 287,955 - +0.1 287,955 - +0.9 287,955 - -0.5 288,430 + GFF2865 0.29 +0.0 288,430 + GFF2865 0.29 +0.3 288,430 + GFF2865 0.29 -0.4 288,431 - GFF2865 0.29 +0.1 288,485 + GFF2865 0.33 -0.6 288,485 + GFF2865 0.33 -1.1 288,485 + GFF2865 0.33 -0.1 288,485 + GFF2865 0.33 -0.4 288,485 + GFF2865 0.33 +0.1 288,485 + GFF2865 0.33 -0.1 288,485 + GFF2865 0.33 -1.1 288,486 - GFF2865 0.33 +0.0 288,486 - GFF2865 0.33 +0.9 288,486 - GFF2865 0.33 -1.1 288,486 - GFF2865 0.33 +1.6 288,486 - GFF2865 0.33 -0.5 288,486 - GFF2865 0.33 -0.2 288,486 - GFF2865 0.33 -1.2 288,486 - GFF2865 0.33 -1.1 288,486 - GFF2865 0.33 -0.1 288,486 - GFF2865 0.33 +0.3 288,486 - GFF2865 0.33 -0.4 288,486 - GFF2865 0.33 -1.4 288,487 + GFF2865 0.33 -0.0 288,487 + GFF2865 0.33 +1.3 288,655 + GFF2865 0.44 +0.8 288,655 + GFF2865 0.44 -0.3 288,853 + GFF2865 0.57 +0.3 288,853 + GFF2865 0.57 -1.0 288,853 + GFF2865 0.57 -1.2 288,853 + GFF2865 0.57 -0.9 288,853 + GFF2865 0.57 -0.4 288,853 + GFF2865 0.57 +0.9 288,853 + GFF2865 0.57 -0.2 288,853 + GFF2865 0.57 -0.1 288,854 - GFF2865 0.57 +0.2 288,854 - GFF2865 0.57 +0.3 288,854 - GFF2865 0.57 -1.0 288,854 - GFF2865 0.57 -1.2 288,881 + GFF2865 0.59 -0.2 288,881 + GFF2865 0.59 -1.6 288,881 + GFF2865 0.59 +0.1 288,882 - GFF2865 0.59 -0.5 288,882 - GFF2865 0.59 +0.3 288,882 - GFF2865 0.59 -0.8 289,279 + GFF2865 0.85 -1.4 289,279 + GFF2865 0.85 -1.8 289,279 + GFF2865 0.85 -0.0 289,279 + GFF2865 0.85 -0.1 289,279 + GFF2865 0.85 +0.4 289,279 + GFF2865 0.85 +1.3 289,280 - GFF2865 0.85 +0.0 289,280 - GFF2865 0.85 -0.6 289,280 - GFF2865 0.85 -0.3 289,280 - GFF2865 0.85 -1.8 289,280 - GFF2865 0.85 -1.2 289,333 + GFF2865 0.88 +1.3 289,333 + GFF2865 0.88 -0.2 289,333 + GFF2865 0.88 -0.5 289,333 + GFF2865 0.88 -0.3 289,334 - GFF2865 0.88 -1.1 289,334 - GFF2865 0.88 -0.8 289,334 - GFF2865 0.88 -0.2 289,334 - GFF2865 0.88 +0.9 289,334 - GFF2865 0.88 -0.9 289,334 - GFF2865 0.88 -0.8 289,447 + +0.9 289,447 + +0.5 289,447 + -0.5 289,447 + -0.9 289,448 - +0.3 289,448 - +0.2 289,448 - -0.1 289,499 + -0.7 289,499 + -0.3 289,499 + +1.1 289,499 + -0.6 289,500 - +0.3 289,500 - -0.9 289,500 - -2.2 289,500 - +0.1 289,546 - -0.2 289,546 - -1.0 289,563 + -0.7 289,564 - -0.3 289,564 - -0.3 289,564 - -0.6 289,644 + -0.9 289,644 + -0.3 289,644 + -0.3 289,644 + -1.7 289,644 + +0.5 289,644 + +0.1 289,644 + +1.3 289,644 + -0.1 289,644 + -0.4 289,644 + -1.1 289,645 - +0.1 289,645 - -0.2 289,645 - -1.5 289,645 - -0.2 289,645 - -1.0 289,910 + GFF2866 0.25 +0.3 289,910 + GFF2866 0.25 +0.2 289,911 - GFF2866 0.25 +0.6 289,911 - GFF2866 0.25 +0.3 289,911 - GFF2866 0.25 +0.1
Or see this region's nucleotide sequence