Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2857 and GFF2858 overlap by 4 nucleotides GFF2858 and GFF2859 are separated by 60 nucleotides GFF2859 and GFF2860 are separated by 93 nucleotides
GFF2857 - Permease of the drug/metabolite transporter (DMT) superfamily, at 280,423 to 281,310
GFF2857
GFF2858 - CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC 2.7.8.5), at 281,307 to 281,873
GFF2858
GFF2859 - Excinuclease ABC subunit C, at 281,934 to 283,901
GFF2859
GFF2860 - FIG00974036: hypothetical protein, at 283,995 to 285,065
GFF2860
Position (kb) 281
282
283
284 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 281.051 kb on + strand, within GFF2857 at 281.168 kb on + strand, within GFF2857 at 281.169 kb on - strand, within GFF2857 at 281.169 kb on - strand, within GFF2857 at 281.201 kb on + strand, within GFF2857 at 281.201 kb on + strand, within GFF2857 at 281.201 kb on + strand, within GFF2857 at 281.202 kb on - strand, within GFF2857 at 281.315 kb on + strand at 281.316 kb on - strand at 281.316 kb on - strand at 281.950 kb on + strand at 281.950 kb on + strand at 281.950 kb on + strand at 281.950 kb on + strand at 281.950 kb on + strand at 281.950 kb on + strand at 281.950 kb on + strand at 281.950 kb on + strand at 281.951 kb on - strand at 281.951 kb on - strand at 281.951 kb on - strand at 281.951 kb on - strand at 281.951 kb on - strand at 281.951 kb on - strand at 281.951 kb on - strand at 281.951 kb on - strand at 281.951 kb on - strand at 281.951 kb on - strand at 281.951 kb on - strand at 281.951 kb on - strand at 281.951 kb on - strand at 281.951 kb on - strand at 281.951 kb on - strand at 282.083 kb on + strand at 282.083 kb on + strand at 282.211 kb on + strand, within GFF2859 at 282.211 kb on + strand, within GFF2859 at 282.211 kb on + strand, within GFF2859 at 282.212 kb on - strand, within GFF2859 at 282.212 kb on - strand, within GFF2859 at 282.485 kb on - strand, within GFF2859 at 282.517 kb on + strand, within GFF2859 at 282.518 kb on - strand, within GFF2859 at 282.550 kb on + strand, within GFF2859 at 282.550 kb on + strand, within GFF2859 at 282.550 kb on + strand, within GFF2859 at 282.550 kb on + strand, within GFF2859 at 282.551 kb on - strand, within GFF2859 at 282.559 kb on + strand, within GFF2859 at 282.559 kb on + strand, within GFF2859 at 282.560 kb on - strand, within GFF2859 at 282.560 kb on - strand, within GFF2859 at 282.585 kb on + strand, within GFF2859 at 282.916 kb on + strand, within GFF2859 at 282.916 kb on + strand, within GFF2859 at 282.916 kb on + strand, within GFF2859 at 282.916 kb on + strand, within GFF2859 at 282.916 kb on + strand, within GFF2859 at 282.916 kb on + strand, within GFF2859 at 282.916 kb on + strand, within GFF2859 at 282.917 kb on - strand, within GFF2859 at 282.917 kb on - strand, within GFF2859 at 282.917 kb on - strand, within GFF2859 at 282.917 kb on - strand, within GFF2859 at 282.917 kb on - strand, within GFF2859 at 282.917 kb on - strand, within GFF2859 at 282.917 kb on - strand, within GFF2859 at 283.052 kb on - strand, within GFF2859 at 283.336 kb on + strand, within GFF2859 at 283.336 kb on + strand, within GFF2859 at 283.336 kb on + strand, within GFF2859 at 283.336 kb on + strand, within GFF2859 at 283.337 kb on - strand, within GFF2859 at 283.337 kb on - strand, within GFF2859 at 283.390 kb on + strand, within GFF2859 at 283.391 kb on - strand, within GFF2859 at 283.391 kb on - strand, within GFF2859 at 283.421 kb on - strand, within GFF2859 at 283.421 kb on - strand, within GFF2859 at 283.421 kb on - strand, within GFF2859 at 283.421 kb on - strand, within GFF2859 at 283.421 kb on - strand, within GFF2859 at 283.421 kb on - strand, within GFF2859 at 283.513 kb on + strand, within GFF2859 at 283.514 kb on - strand, within GFF2859 at 283.544 kb on - strand, within GFF2859 at 283.544 kb on - strand, within GFF2859 at 283.544 kb on - strand, within GFF2859 at 283.546 kb on + strand, within GFF2859 at 283.546 kb on + strand, within GFF2859 at 283.546 kb on + strand, within GFF2859 at 283.546 kb on + strand, within GFF2859 at 283.546 kb on + strand, within GFF2859 at 283.585 kb on + strand, within GFF2859 at 283.591 kb on + strand, within GFF2859 at 283.591 kb on + strand, within GFF2859 at 283.591 kb on + strand, within GFF2859 at 283.591 kb on + strand, within GFF2859 at 283.591 kb on + strand, within GFF2859 at 283.591 kb on + strand, within GFF2859 at 283.592 kb on - strand, within GFF2859 at 283.592 kb on - strand, within GFF2859 at 283.592 kb on - strand, within GFF2859 at 283.592 kb on - strand, within GFF2859 at 283.592 kb on - strand, within GFF2859 at 283.592 kb on - strand, within GFF2859 at 283.621 kb on + strand, within GFF2859 at 283.621 kb on + strand, within GFF2859 at 283.621 kb on + strand, within GFF2859 at 283.621 kb on + strand, within GFF2859 at 283.621 kb on + strand, within GFF2859 at 283.621 kb on + strand, within GFF2859 at 283.621 kb on + strand, within GFF2859 at 283.621 kb on + strand, within GFF2859 at 283.622 kb on - strand, within GFF2859 at 283.622 kb on - strand, within GFF2859 at 283.759 kb on + strand at 283.759 kb on + strand at 283.759 kb on + strand at 283.759 kb on + strand at 283.759 kb on + strand at 283.759 kb on + strand at 283.759 kb on + strand at 283.759 kb on + strand at 283.759 kb on + strand at 283.760 kb on - strand at 283.760 kb on - strand at 283.760 kb on - strand at 283.760 kb on - strand at 283.760 kb on - strand at 283.801 kb on + strand at 283.801 kb on + strand at 283.801 kb on + strand at 283.801 kb on + strand at 283.801 kb on + strand at 283.801 kb on + strand at 283.801 kb on + strand at 283.802 kb on - strand at 283.802 kb on - strand at 283.802 kb on - strand at 283.802 kb on - strand at 283.802 kb on - strand at 283.802 kb on - strand at 283.802 kb on - strand at 283.828 kb on + strand at 283.829 kb on - strand at 283.834 kb on + strand at 283.834 kb on + strand at 283.834 kb on + strand at 283.834 kb on + strand at 283.834 kb on + strand at 283.834 kb on + strand at 283.834 kb on + strand at 283.834 kb on + strand at 283.835 kb on - strand at 283.835 kb on - strand at 283.835 kb on - strand at 283.908 kb on + strand at 283.909 kb on - strand at 283.909 kb on - strand at 283.909 kb on - strand at 283.909 kb on - strand at 283.994 kb on + strand at 283.994 kb on + strand at 283.994 kb on + strand at 283.994 kb on + strand at 283.994 kb on + strand at 283.994 kb on + strand at 283.995 kb on - strand at 283.995 kb on - strand at 283.995 kb on - strand at 283.995 kb on - strand at 283.995 kb on - strand at 283.995 kb on - strand at 283.995 kb on - strand at 283.995 kb on - strand at 283.995 kb on - strand at 283.995 kb on - strand at 283.995 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 281,051 + GFF2857 0.71 -0.9 281,168 + GFF2857 0.84 -0.7 281,169 - GFF2857 0.84 +1.6 281,169 - GFF2857 0.84 +0.2 281,201 + GFF2857 0.88 +0.1 281,201 + GFF2857 0.88 +0.1 281,201 + GFF2857 0.88 -1.1 281,202 - GFF2857 0.88 -0.4 281,315 + -1.4 281,316 - -2.0 281,316 - -0.5 281,950 + -2.6 281,950 + +0.3 281,950 + +0.6 281,950 + -0.3 281,950 + +0.3 281,950 + +0.3 281,950 + -0.5 281,950 + -0.5 281,951 - -0.5 281,951 - -1.7 281,951 - -0.5 281,951 - -0.2 281,951 - +0.1 281,951 - -1.0 281,951 - -1.0 281,951 - +0.6 281,951 - -0.2 281,951 - +0.7 281,951 - -2.3 281,951 - +1.1 281,951 - -0.4 281,951 - +1.0 281,951 - -0.4 282,083 + -0.2 282,083 + -0.2 282,211 + GFF2859 0.14 -0.7 282,211 + GFF2859 0.14 +0.2 282,211 + GFF2859 0.14 -1.0 282,212 - GFF2859 0.14 -0.6 282,212 - GFF2859 0.14 +0.9 282,485 - GFF2859 0.28 -1.1 282,517 + GFF2859 0.30 -0.4 282,518 - GFF2859 0.30 +1.9 282,550 + GFF2859 0.31 -0.1 282,550 + GFF2859 0.31 +0.2 282,550 + GFF2859 0.31 -0.7 282,550 + GFF2859 0.31 -0.4 282,551 - GFF2859 0.31 +0.7 282,559 + GFF2859 0.32 +0.3 282,559 + GFF2859 0.32 -0.1 282,560 - GFF2859 0.32 -0.5 282,560 - GFF2859 0.32 +1.9 282,585 + GFF2859 0.33 -0.4 282,916 + GFF2859 0.50 -0.5 282,916 + GFF2859 0.50 -1.5 282,916 + GFF2859 0.50 -0.6 282,916 + GFF2859 0.50 -1.2 282,916 + GFF2859 0.50 -1.1 282,916 + GFF2859 0.50 +3.1 282,916 + GFF2859 0.50 -0.2 282,917 - GFF2859 0.50 -0.3 282,917 - GFF2859 0.50 +0.1 282,917 - GFF2859 0.50 -0.7 282,917 - GFF2859 0.50 -0.2 282,917 - GFF2859 0.50 -0.1 282,917 - GFF2859 0.50 -1.2 282,917 - GFF2859 0.50 -0.2 283,052 - GFF2859 0.57 -1.1 283,336 + GFF2859 0.71 +0.2 283,336 + GFF2859 0.71 -0.3 283,336 + GFF2859 0.71 -0.2 283,336 + GFF2859 0.71 -1.0 283,337 - GFF2859 0.71 -1.4 283,337 - GFF2859 0.71 +0.6 283,390 + GFF2859 0.74 +1.5 283,391 - GFF2859 0.74 +0.2 283,391 - GFF2859 0.74 -0.1 283,421 - GFF2859 0.76 -1.1 283,421 - GFF2859 0.76 -1.2 283,421 - GFF2859 0.76 +0.3 283,421 - GFF2859 0.76 -0.3 283,421 - GFF2859 0.76 -0.3 283,421 - GFF2859 0.76 +0.6 283,513 + GFF2859 0.80 +0.2 283,514 - GFF2859 0.80 +0.6 283,544 - GFF2859 0.82 +0.5 283,544 - GFF2859 0.82 -0.7 283,544 - GFF2859 0.82 +0.3 283,546 + GFF2859 0.82 -0.1 283,546 + GFF2859 0.82 +0.0 283,546 + GFF2859 0.82 +1.3 283,546 + GFF2859 0.82 -1.7 283,546 + GFF2859 0.82 -0.3 283,585 + GFF2859 0.84 -0.7 283,591 + GFF2859 0.84 -0.7 283,591 + GFF2859 0.84 +1.7 283,591 + GFF2859 0.84 -0.3 283,591 + GFF2859 0.84 -1.2 283,591 + GFF2859 0.84 +0.1 283,591 + GFF2859 0.84 -2.4 283,592 - GFF2859 0.84 +0.2 283,592 - GFF2859 0.84 -0.8 283,592 - GFF2859 0.84 -1.9 283,592 - GFF2859 0.84 -2.0 283,592 - GFF2859 0.84 +0.3 283,592 - GFF2859 0.84 +0.3 283,621 + GFF2859 0.86 -0.5 283,621 + GFF2859 0.86 -1.2 283,621 + GFF2859 0.86 +0.4 283,621 + GFF2859 0.86 -0.5 283,621 + GFF2859 0.86 -1.4 283,621 + GFF2859 0.86 -1.1 283,621 + GFF2859 0.86 +0.6 283,621 + GFF2859 0.86 -0.5 283,622 - GFF2859 0.86 -0.4 283,622 - GFF2859 0.86 -0.1 283,759 + -1.4 283,759 + -1.2 283,759 + -0.1 283,759 + -0.7 283,759 + -0.6 283,759 + -1.1 283,759 + -0.5 283,759 + +1.9 283,759 + -0.2 283,760 - -1.1 283,760 - +0.7 283,760 - +1.7 283,760 - -0.7 283,760 - -0.1 283,801 + -0.3 283,801 + -0.1 283,801 + -0.2 283,801 + -0.1 283,801 + -1.2 283,801 + +0.9 283,801 + +0.1 283,802 - -0.2 283,802 - -0.6 283,802 - -0.6 283,802 - -0.8 283,802 - -0.9 283,802 - -0.7 283,802 - -1.3 283,828 + +1.3 283,829 - -2.9 283,834 + -0.7 283,834 + -0.4 283,834 + -1.1 283,834 + +1.2 283,834 + -0.9 283,834 + +0.2 283,834 + -0.4 283,834 + -0.6 283,835 - -0.1 283,835 - +0.6 283,835 - +0.8 283,908 + +0.9 283,909 - +0.5 283,909 - -0.7 283,909 - -0.5 283,909 - -0.7 283,994 + +1.9 283,994 + -1.7 283,994 + -0.9 283,994 + +0.9 283,994 + +0.7 283,994 + -1.4 283,995 - -0.1 283,995 - -0.2 283,995 - -1.1 283,995 - +0.5 283,995 - +0.3 283,995 - -1.3 283,995 - -1.4 283,995 - +0.2 283,995 - -1.8 283,995 - -0.8 283,995 - +0.1
Or see this region's nucleotide sequence