Strain Fitness in Variovorax sp. SCN45 around GFF2831

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2829 and GFF2830 are separated by 55 nucleotidesGFF2830 and GFF2831 are separated by 14 nucleotidesGFF2831 and GFF2832 overlap by 4 nucleotides GFF2829 - Uncharacterized protein CC_3060, at 256,920 to 257,420 GFF2829 GFF2830 - Uncharacterized protein CC_3061, at 257,476 to 258,285 GFF2830 GFF2831 - FAD:protein FMN transferase (EC 2.7.1.180) @ FAD:protein FMN transferase (EC 2.7.1.180), CC_3059-CC_3061-associated, at 258,300 to 259,304 GFF2831 GFF2832 - Uncharacterized protein PA4513, at 259,301 to 260,668 GFF2832 Position (kb) 258 259 260Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 257.398 kb on + strandat 257.738 kb on + strand, within GFF2830at 257.738 kb on + strand, within GFF2830at 257.738 kb on + strand, within GFF2830at 257.738 kb on + strand, within GFF2830at 257.738 kb on + strand, within GFF2830at 257.738 kb on + strand, within GFF2830at 257.738 kb on + strand, within GFF2830at 257.738 kb on + strand, within GFF2830at 257.738 kb on + strand, within GFF2830at 257.739 kb on - strand, within GFF2830at 257.739 kb on - strand, within GFF2830at 257.739 kb on - strand, within GFF2830at 257.739 kb on - strand, within GFF2830at 257.739 kb on - strand, within GFF2830at 257.739 kb on - strand, within GFF2830at 257.739 kb on - strand, within GFF2830at 257.739 kb on - strand, within GFF2830at 257.770 kb on + strand, within GFF2830at 257.770 kb on + strand, within GFF2830at 257.770 kb on + strand, within GFF2830at 257.770 kb on + strand, within GFF2830at 257.771 kb on - strand, within GFF2830at 257.771 kb on - strand, within GFF2830at 257.771 kb on - strand, within GFF2830at 257.771 kb on - strand, within GFF2830at 257.771 kb on - strand, within GFF2830at 257.771 kb on - strand, within GFF2830at 257.771 kb on - strand, within GFF2830at 257.771 kb on - strand, within GFF2830at 257.771 kb on - strand, within GFF2830at 257.771 kb on - strand, within GFF2830at 257.771 kb on - strand, within GFF2830at 257.771 kb on - strand, within GFF2830at 258.106 kb on + strand, within GFF2830at 258.106 kb on + strand, within GFF2830at 258.106 kb on + strand, within GFF2830at 258.107 kb on - strand, within GFF2830at 258.107 kb on - strand, within GFF2830at 258.187 kb on + strand, within GFF2830at 258.187 kb on + strand, within GFF2830at 258.187 kb on + strand, within GFF2830at 258.187 kb on + strand, within GFF2830at 258.187 kb on + strand, within GFF2830at 258.187 kb on + strand, within GFF2830at 258.187 kb on + strand, within GFF2830at 258.187 kb on + strand, within GFF2830at 258.187 kb on + strand, within GFF2830at 258.187 kb on + strand, within GFF2830at 258.187 kb on + strand, within GFF2830at 258.187 kb on + strand, within GFF2830at 258.187 kb on + strand, within GFF2830at 258.187 kb on + strand, within GFF2830at 258.187 kb on + strand, within GFF2830at 258.187 kb on + strand, within GFF2830at 258.187 kb on + strand, within GFF2830at 258.187 kb on + strand, within GFF2830at 258.187 kb on + strand, within GFF2830at 258.187 kb on + strand, within GFF2830at 258.187 kb on + strand, within GFF2830at 258.187 kb on + strand, within GFF2830at 258.187 kb on + strand, within GFF2830at 258.187 kb on + strand, within GFF2830at 258.187 kb on + strand, within GFF2830at 258.187 kb on + strand, within GFF2830at 258.187 kb on + strand, within GFF2830at 258.187 kb on + strand, within GFF2830at 258.187 kb on + strand, within GFF2830at 258.187 kb on + strand, within GFF2830at 258.187 kb on + strand, within GFF2830at 258.187 kb on + strand, within GFF2830at 258.188 kb on - strand, within GFF2830at 258.188 kb on - strand, within GFF2830at 258.188 kb on - strand, within GFF2830at 258.188 kb on - strand, within GFF2830at 258.188 kb on - strand, within GFF2830at 258.188 kb on - strand, within GFF2830at 258.188 kb on - strand, within GFF2830at 258.188 kb on - strand, within GFF2830at 258.188 kb on - strand, within GFF2830at 258.188 kb on - strand, within GFF2830at 258.188 kb on - strand, within GFF2830at 258.188 kb on - strand, within GFF2830at 258.188 kb on - strand, within GFF2830at 258.188 kb on - strand, within GFF2830at 258.189 kb on - strand, within GFF2830at 258.256 kb on + strandat 258.256 kb on + strandat 258.257 kb on - strandat 258.257 kb on - strandat 258.257 kb on - strandat 258.336 kb on + strandat 258.336 kb on + strandat 258.337 kb on - strandat 258.488 kb on + strand, within GFF2831at 258.488 kb on + strand, within GFF2831at 258.488 kb on + strand, within GFF2831at 258.854 kb on + strand, within GFF2831at 259.353 kb on - strandat 259.353 kb on - strandat 259.376 kb on + strandat 259.376 kb on + strandat 259.376 kb on + strandat 259.376 kb on + strandat 259.376 kb on + strandat 259.376 kb on + strandat 259.376 kb on + strandat 259.376 kb on + strandat 259.376 kb on + strandat 259.376 kb on + strandat 259.376 kb on + strandat 259.376 kb on + strandat 259.376 kb on + strandat 259.376 kb on + strandat 259.376 kb on + strandat 259.376 kb on + strandat 259.376 kb on + strandat 259.376 kb on + strandat 259.376 kb on + strandat 259.376 kb on + strandat 259.376 kb on + strandat 259.376 kb on + strandat 259.376 kb on + strandat 259.376 kb on + strandat 259.376 kb on + strandat 259.376 kb on + strandat 259.376 kb on + strandat 259.376 kb on + strandat 259.376 kb on + strandat 259.377 kb on - strandat 259.377 kb on - strandat 259.377 kb on - strandat 259.377 kb on - strandat 259.377 kb on - strandat 259.377 kb on - strandat 259.377 kb on - strandat 259.377 kb on - strandat 259.377 kb on - strandat 259.377 kb on - strandat 259.377 kb on - strandat 259.377 kb on - strandat 259.377 kb on - strandat 259.377 kb on - strandat 259.377 kb on - strandat 259.377 kb on - strandat 259.377 kb on - strandat 259.377 kb on - strandat 259.377 kb on - strandat 259.377 kb on - strandat 259.377 kb on - strandat 259.377 kb on - strandat 259.377 kb on - strandat 259.377 kb on - strandat 259.377 kb on - strandat 259.377 kb on - strandat 259.377 kb on - strandat 259.377 kb on - strandat 259.377 kb on - strandat 259.377 kb on - strandat 259.377 kb on - strandat 259.377 kb on - strandat 259.377 kb on - strandat 259.377 kb on - strandat 259.377 kb on - strandat 259.377 kb on - strandat 259.456 kb on + strand, within GFF2832at 259.456 kb on + strand, within GFF2832at 259.456 kb on + strand, within GFF2832at 259.456 kb on + strand, within GFF2832at 259.456 kb on + strand, within GFF2832at 259.456 kb on + strand, within GFF2832at 259.456 kb on + strand, within GFF2832at 259.456 kb on + strand, within GFF2832at 259.456 kb on + strand, within GFF2832at 259.456 kb on + strand, within GFF2832at 259.456 kb on + strand, within GFF2832at 259.456 kb on + strand, within GFF2832at 259.456 kb on + strand, within GFF2832at 259.456 kb on + strand, within GFF2832at 259.456 kb on + strand, within GFF2832at 259.456 kb on + strand, within GFF2832at 259.456 kb on + strand, within GFF2832at 259.456 kb on + strand, within GFF2832at 259.456 kb on + strand, within GFF2832at 259.456 kb on + strand, within GFF2832at 259.456 kb on + strand, within GFF2832at 259.456 kb on + strand, within GFF2832at 259.456 kb on + strand, within GFF2832at 259.457 kb on - strand, within GFF2832at 259.457 kb on - strand, within GFF2832at 259.457 kb on - strand, within GFF2832at 259.457 kb on - strand, within GFF2832at 259.457 kb on - strand, within GFF2832at 259.457 kb on - strand, within GFF2832at 259.457 kb on - strand, within GFF2832at 259.457 kb on - strand, within GFF2832at 259.457 kb on - strand, within GFF2832at 259.457 kb on - strand, within GFF2832at 259.457 kb on - strand, within GFF2832at 259.457 kb on - strand, within GFF2832at 259.457 kb on - strand, within GFF2832at 259.457 kb on - strand, within GFF2832at 259.457 kb on - strand, within GFF2832at 259.457 kb on - strand, within GFF2832at 259.457 kb on - strand, within GFF2832at 259.457 kb on - strand, within GFF2832at 259.457 kb on - strand, within GFF2832at 259.457 kb on - strand, within GFF2832at 259.457 kb on - strand, within GFF2832at 259.552 kb on + strand, within GFF2832at 259.622 kb on + strand, within GFF2832at 259.622 kb on + strand, within GFF2832at 259.622 kb on + strand, within GFF2832at 259.622 kb on + strand, within GFF2832at 259.623 kb on - strand, within GFF2832at 259.623 kb on - strand, within GFF2832at 259.623 kb on - strand, within GFF2832at 259.623 kb on - strand, within GFF2832at 259.623 kb on - strand, within GFF2832at 259.623 kb on - strand, within GFF2832at 259.623 kb on - strand, within GFF2832at 259.623 kb on - strand, within GFF2832at 259.701 kb on + strand, within GFF2832at 259.701 kb on + strand, within GFF2832at 259.707 kb on - strand, within GFF2832at 259.707 kb on - strand, within GFF2832at 259.736 kb on + strand, within GFF2832at 259.736 kb on + strand, within GFF2832at 259.736 kb on + strand, within GFF2832at 259.737 kb on - strand, within GFF2832at 259.737 kb on - strand, within GFF2832at 259.737 kb on - strand, within GFF2832at 259.885 kb on - strand, within GFF2832at 259.885 kb on - strand, within GFF2832at 260.078 kb on + strand, within GFF2832at 260.078 kb on + strand, within GFF2832at 260.078 kb on + strand, within GFF2832at 260.078 kb on + strand, within GFF2832at 260.079 kb on - strand, within GFF2832at 260.079 kb on - strand, within GFF2832

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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257,398 + +0.1
257,738 + GFF2830 0.32 +0.2
257,738 + GFF2830 0.32 -1.2
257,738 + GFF2830 0.32 -0.8
257,738 + GFF2830 0.32 -0.5
257,738 + GFF2830 0.32 -0.6
257,738 + GFF2830 0.32 +0.0
257,738 + GFF2830 0.32 +0.1
257,738 + GFF2830 0.32 -0.8
257,738 + GFF2830 0.32 +1.2
257,739 - GFF2830 0.32 -1.1
257,739 - GFF2830 0.32 -0.7
257,739 - GFF2830 0.32 -0.4
257,739 - GFF2830 0.32 -0.1
257,739 - GFF2830 0.32 +0.9
257,739 - GFF2830 0.32 -0.2
257,739 - GFF2830 0.32 -0.5
257,739 - GFF2830 0.32 -0.6
257,770 + GFF2830 0.36 +0.4
257,770 + GFF2830 0.36 -1.1
257,770 + GFF2830 0.36 -0.6
257,770 + GFF2830 0.36 +0.0
257,771 - GFF2830 0.36 -0.4
257,771 - GFF2830 0.36 +0.6
257,771 - GFF2830 0.36 -0.4
257,771 - GFF2830 0.36 -0.4
257,771 - GFF2830 0.36 -0.9
257,771 - GFF2830 0.36 -1.9
257,771 - GFF2830 0.36 +0.5
257,771 - GFF2830 0.36 -0.6
257,771 - GFF2830 0.36 -0.9
257,771 - GFF2830 0.36 -0.0
257,771 - GFF2830 0.36 -0.3
257,771 - GFF2830 0.36 -1.2
258,106 + GFF2830 0.78 -0.4
258,106 + GFF2830 0.78 -0.1
258,106 + GFF2830 0.78 -1.0
258,107 - GFF2830 0.78 -1.2
258,107 - GFF2830 0.78 -0.5
258,187 + GFF2830 0.88 -0.6
258,187 + GFF2830 0.88 -0.3
258,187 + GFF2830 0.88 -0.2
258,187 + GFF2830 0.88 -0.9
258,187 + GFF2830 0.88 -1.4
258,187 + GFF2830 0.88 -0.1
258,187 + GFF2830 0.88 -0.9
258,187 + GFF2830 0.88 -0.9
258,187 + GFF2830 0.88 -0.6
258,187 + GFF2830 0.88 -0.4
258,187 + GFF2830 0.88 -0.7
258,187 + GFF2830 0.88 -0.6
258,187 + GFF2830 0.88 -2.1
258,187 + GFF2830 0.88 -0.3
258,187 + GFF2830 0.88 -0.5
258,187 + GFF2830 0.88 -0.1
258,187 + GFF2830 0.88 -0.5
258,187 + GFF2830 0.88 -0.9
258,187 + GFF2830 0.88 -0.4
258,187 + GFF2830 0.88 +0.0
258,187 + GFF2830 0.88 -1.9
258,187 + GFF2830 0.88 +0.1
258,187 + GFF2830 0.88 -0.6
258,187 + GFF2830 0.88 -0.7
258,187 + GFF2830 0.88 +0.8
258,187 + GFF2830 0.88 +0.0
258,187 + GFF2830 0.88 +0.6
258,187 + GFF2830 0.88 -0.5
258,187 + GFF2830 0.88 +0.1
258,187 + GFF2830 0.88 -0.3
258,187 + GFF2830 0.88 -1.9
258,187 + GFF2830 0.88 -0.1
258,188 - GFF2830 0.88 +1.5
258,188 - GFF2830 0.88 -1.1
258,188 - GFF2830 0.88 -0.6
258,188 - GFF2830 0.88 -1.0
258,188 - GFF2830 0.88 -0.1
258,188 - GFF2830 0.88 +0.2
258,188 - GFF2830 0.88 +0.4
258,188 - GFF2830 0.88 -0.1
258,188 - GFF2830 0.88 -0.8
258,188 - GFF2830 0.88 -0.6
258,188 - GFF2830 0.88 -0.4
258,188 - GFF2830 0.88 +0.1
258,188 - GFF2830 0.88 -0.1
258,188 - GFF2830 0.88 -0.3
258,189 - GFF2830 0.88 +1.9
258,256 + +1.9
258,256 + -0.4
258,257 - +0.8
258,257 - -0.4
258,257 - -0.4
258,336 + +2.9
258,336 + -1.4
258,337 - -1.8
258,488 + GFF2831 0.19 +0.2
258,488 + GFF2831 0.19 -1.3
258,488 + GFF2831 0.19 -0.9
258,854 + GFF2831 0.55 -1.0
259,353 - -1.1
259,353 - -1.1
259,376 + -0.9
259,376 + -0.4
259,376 + -0.3
259,376 + -0.6
259,376 + -1.4
259,376 + -0.5
259,376 + -0.6
259,376 + -0.2
259,376 + -0.5
259,376 + +0.4
259,376 + -0.7
259,376 + +0.4
259,376 + +0.9
259,376 + -0.3
259,376 + +0.6
259,376 + +0.4
259,376 + +0.0
259,376 + -1.0
259,376 + -0.6
259,376 + -0.8
259,376 + -0.5
259,376 + +0.9
259,376 + -1.0
259,376 + -0.4
259,376 + -1.6
259,376 + -0.2
259,376 + -1.0
259,376 + -0.4
259,376 + +0.5
259,377 - -0.1
259,377 - +0.6
259,377 - -1.0
259,377 - -1.1
259,377 - -0.8
259,377 - -0.3
259,377 - -0.0
259,377 - +0.2
259,377 - -0.4
259,377 - +0.5
259,377 - -0.5
259,377 - -0.2
259,377 - -1.2
259,377 - -0.8
259,377 - -1.5
259,377 - -0.6
259,377 - -0.6
259,377 - -0.6
259,377 - +0.3
259,377 - -1.2
259,377 - -0.2
259,377 - -0.6
259,377 - -2.6
259,377 - -2.0
259,377 - +0.3
259,377 - -0.1
259,377 - -0.1
259,377 - -0.7
259,377 - +0.3
259,377 - -0.6
259,377 - +0.1
259,377 - -1.8
259,377 - -0.7
259,377 - -0.6
259,377 - -1.7
259,377 - -0.0
259,456 + GFF2832 0.11 -1.2
259,456 + GFF2832 0.11 -1.6
259,456 + GFF2832 0.11 -0.3
259,456 + GFF2832 0.11 +1.0
259,456 + GFF2832 0.11 -1.9
259,456 + GFF2832 0.11 +0.4
259,456 + GFF2832 0.11 -0.5
259,456 + GFF2832 0.11 +0.6
259,456 + GFF2832 0.11 -0.2
259,456 + GFF2832 0.11 +0.4
259,456 + GFF2832 0.11 -0.2
259,456 + GFF2832 0.11 +0.7
259,456 + GFF2832 0.11 -0.2
259,456 + GFF2832 0.11 +1.9
259,456 + GFF2832 0.11 +0.2
259,456 + GFF2832 0.11 -0.7
259,456 + GFF2832 0.11 -0.3
259,456 + GFF2832 0.11 +0.1
259,456 + GFF2832 0.11 -0.1
259,456 + GFF2832 0.11 +1.9
259,456 + GFF2832 0.11 -3.1
259,456 + GFF2832 0.11 +1.4
259,456 + GFF2832 0.11 -1.5
259,457 - GFF2832 0.11 +0.6
259,457 - GFF2832 0.11 -0.5
259,457 - GFF2832 0.11 +0.4
259,457 - GFF2832 0.11 -0.8
259,457 - GFF2832 0.11 -0.8
259,457 - GFF2832 0.11 +1.1
259,457 - GFF2832 0.11 -0.0
259,457 - GFF2832 0.11 -0.5
259,457 - GFF2832 0.11 -2.1
259,457 - GFF2832 0.11 -0.6
259,457 - GFF2832 0.11 -0.1
259,457 - GFF2832 0.11 -0.4
259,457 - GFF2832 0.11 -0.1
259,457 - GFF2832 0.11 -1.1
259,457 - GFF2832 0.11 +0.4
259,457 - GFF2832 0.11 +0.5
259,457 - GFF2832 0.11 -1.0
259,457 - GFF2832 0.11 +0.4
259,457 - GFF2832 0.11 -0.7
259,457 - GFF2832 0.11 -0.1
259,457 - GFF2832 0.11 -1.2
259,552 + GFF2832 0.18 +0.1
259,622 + GFF2832 0.23 -0.3
259,622 + GFF2832 0.23 +0.4
259,622 + GFF2832 0.23 -0.5
259,622 + GFF2832 0.23 +0.0
259,623 - GFF2832 0.24 -0.1
259,623 - GFF2832 0.24 +0.4
259,623 - GFF2832 0.24 -0.5
259,623 - GFF2832 0.24 +0.5
259,623 - GFF2832 0.24 -0.5
259,623 - GFF2832 0.24 -0.7
259,623 - GFF2832 0.24 +0.2
259,623 - GFF2832 0.24 +1.4
259,701 + GFF2832 0.29 +0.7
259,701 + GFF2832 0.29 +0.0
259,707 - GFF2832 0.30 -0.2
259,707 - GFF2832 0.30 -0.9
259,736 + GFF2832 0.32 -0.8
259,736 + GFF2832 0.32 +0.3
259,736 + GFF2832 0.32 -0.2
259,737 - GFF2832 0.32 -1.2
259,737 - GFF2832 0.32 +0.9
259,737 - GFF2832 0.32 -0.3
259,885 - GFF2832 0.43 -0.9
259,885 - GFF2832 0.43 -0.6
260,078 + GFF2832 0.57 -1.9
260,078 + GFF2832 0.57 +0.5
260,078 + GFF2832 0.57 +0.5
260,078 + GFF2832 0.57 -0.4
260,079 - GFF2832 0.57 -0.7
260,079 - GFF2832 0.57 +1.1

Or see this region's nucleotide sequence