Strain Fitness in Variovorax sp. SCN45 around GFF2817

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2814 and GFF2815 are separated by 21 nucleotidesGFF2815 and GFF2816 are separated by 76 nucleotidesGFF2816 and GFF2817 are separated by 116 nucleotidesGFF2817 and GFF2818 are separated by 126 nucleotides GFF2814 - SSU ribosomal protein S18p @ SSU ribosomal protein S18p, zinc-independent, at 241,743 to 242,024 GFF2814 GFF2815 - Primosomal replication protein N, at 242,046 to 242,288 GFF2815 GFF2816 - SSU ribosomal protein S6p, at 242,365 to 242,739 GFF2816 GFF2817 - Probable proline-rich protein, at 242,856 to 243,326 GFF2817 GFF2818 - Phosphoenolpyruvate synthase (EC 2.7.9.2), at 243,453 to 245,846 GFF2818 Position (kb) 242 243 244Strain fitness (log2 ratio) -2 -1 0 1 2 3at 242.070 kb on - strandat 242.070 kb on - strandat 242.070 kb on - strandat 242.214 kb on - strand, within GFF2815at 242.214 kb on - strand, within GFF2815at 242.214 kb on - strand, within GFF2815at 242.214 kb on - strand, within GFF2815at 242.214 kb on - strand, within GFF2815at 242.385 kb on - strandat 242.385 kb on - strandat 242.385 kb on - strandat 242.824 kb on + strandat 242.824 kb on + strandat 242.824 kb on + strandat 242.824 kb on + strandat 242.824 kb on + strandat 242.825 kb on - strandat 242.825 kb on - strandat 242.825 kb on - strandat 242.825 kb on - strandat 242.825 kb on - strandat 242.825 kb on - strandat 242.825 kb on - strandat 242.832 kb on + strandat 242.832 kb on + strandat 242.833 kb on - strandat 242.833 kb on - strandat 242.833 kb on - strandat 242.944 kb on + strand, within GFF2817at 242.944 kb on + strand, within GFF2817at 242.944 kb on + strand, within GFF2817at 242.944 kb on + strand, within GFF2817at 242.944 kb on + strand, within GFF2817at 242.944 kb on + strand, within GFF2817at 242.944 kb on + strand, within GFF2817at 242.944 kb on + strand, within GFF2817at 242.944 kb on + strand, within GFF2817at 242.944 kb on + strand, within GFF2817at 242.944 kb on + strand, within GFF2817at 242.944 kb on + strand, within GFF2817at 242.944 kb on + strand, within GFF2817at 242.944 kb on + strand, within GFF2817at 242.944 kb on + strand, within GFF2817at 242.944 kb on + strand, within GFF2817at 242.945 kb on - strand, within GFF2817at 242.945 kb on - strand, within GFF2817at 242.945 kb on - strand, within GFF2817at 242.945 kb on - strand, within GFF2817at 242.945 kb on - strand, within GFF2817at 242.945 kb on - strand, within GFF2817at 242.945 kb on - strand, within GFF2817at 242.945 kb on - strand, within GFF2817at 242.945 kb on - strand, within GFF2817at 242.945 kb on - strand, within GFF2817at 242.945 kb on - strand, within GFF2817at 242.945 kb on - strand, within GFF2817at 242.945 kb on - strand, within GFF2817at 242.945 kb on - strand, within GFF2817at 243.026 kb on - strand, within GFF2817at 243.037 kb on + strand, within GFF2817at 243.037 kb on + strand, within GFF2817at 243.037 kb on + strand, within GFF2817at 243.037 kb on + strand, within GFF2817at 243.038 kb on - strand, within GFF2817at 243.038 kb on - strand, within GFF2817at 243.038 kb on - strand, within GFF2817at 243.038 kb on - strand, within GFF2817at 243.038 kb on - strand, within GFF2817at 243.038 kb on - strand, within GFF2817at 243.038 kb on - strand, within GFF2817at 243.038 kb on - strand, within GFF2817at 243.287 kb on + strandat 243.287 kb on + strandat 243.287 kb on + strandat 243.288 kb on - strandat 243.288 kb on - strandat 243.288 kb on - strandat 243.288 kb on - strandat 243.380 kb on + strandat 243.381 kb on - strandat 243.586 kb on + strandat 243.586 kb on + strandat 243.586 kb on + strandat 243.586 kb on + strandat 243.586 kb on + strandat 243.586 kb on + strandat 243.586 kb on + strandat 243.586 kb on + strandat 243.586 kb on + strandat 243.586 kb on + strandat 243.586 kb on + strandat 243.586 kb on + strandat 243.586 kb on + strandat 243.586 kb on + strandat 243.587 kb on - strandat 243.587 kb on - strandat 243.587 kb on - strandat 243.587 kb on - strandat 243.587 kb on - strandat 243.587 kb on - strandat 243.994 kb on + strand, within GFF2818at 244.046 kb on - strand, within GFF2818at 244.072 kb on + strand, within GFF2818at 244.168 kb on + strand, within GFF2818at 244.168 kb on + strand, within GFF2818at 244.168 kb on + strand, within GFF2818at 244.168 kb on + strand, within GFF2818at 244.168 kb on + strand, within GFF2818at 244.168 kb on + strand, within GFF2818at 244.168 kb on + strand, within GFF2818at 244.168 kb on + strand, within GFF2818at 244.168 kb on + strand, within GFF2818at 244.168 kb on + strand, within GFF2818at 244.168 kb on + strand, within GFF2818at 244.168 kb on + strand, within GFF2818at 244.168 kb on + strand, within GFF2818at 244.169 kb on - strand, within GFF2818at 244.169 kb on - strand, within GFF2818at 244.169 kb on - strand, within GFF2818at 244.169 kb on - strand, within GFF2818at 244.169 kb on - strand, within GFF2818at 244.243 kb on + strand, within GFF2818at 244.244 kb on - strand, within GFF2818

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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242,070 - +0.1
242,070 - +0.7
242,070 - -1.3
242,214 - GFF2815 0.69 -0.2
242,214 - GFF2815 0.69 +1.2
242,214 - GFF2815 0.69 -0.5
242,214 - GFF2815 0.69 -0.1
242,214 - GFF2815 0.69 -0.5
242,385 - -0.1
242,385 - -0.1
242,385 - -0.6
242,824 + +0.8
242,824 + -0.8
242,824 + -0.4
242,824 + -0.1
242,824 + +0.8
242,825 - -0.8
242,825 - -0.6
242,825 - +1.1
242,825 - -0.3
242,825 - +0.5
242,825 - -0.4
242,825 - +0.1
242,832 + +0.7
242,832 + +0.6
242,833 - -1.0
242,833 - -1.0
242,833 - -0.2
242,944 + GFF2817 0.19 +1.1
242,944 + GFF2817 0.19 -1.3
242,944 + GFF2817 0.19 -0.1
242,944 + GFF2817 0.19 -0.4
242,944 + GFF2817 0.19 -0.7
242,944 + GFF2817 0.19 +1.2
242,944 + GFF2817 0.19 -1.4
242,944 + GFF2817 0.19 -0.2
242,944 + GFF2817 0.19 -1.4
242,944 + GFF2817 0.19 -0.8
242,944 + GFF2817 0.19 -0.1
242,944 + GFF2817 0.19 -1.4
242,944 + GFF2817 0.19 +1.9
242,944 + GFF2817 0.19 +0.4
242,944 + GFF2817 0.19 -1.3
242,944 + GFF2817 0.19 -0.2
242,945 - GFF2817 0.19 +0.0
242,945 - GFF2817 0.19 -0.1
242,945 - GFF2817 0.19 -0.3
242,945 - GFF2817 0.19 +0.8
242,945 - GFF2817 0.19 -1.2
242,945 - GFF2817 0.19 -0.4
242,945 - GFF2817 0.19 -0.5
242,945 - GFF2817 0.19 -0.3
242,945 - GFF2817 0.19 -0.4
242,945 - GFF2817 0.19 -0.0
242,945 - GFF2817 0.19 -0.3
242,945 - GFF2817 0.19 +1.4
242,945 - GFF2817 0.19 -0.2
242,945 - GFF2817 0.19 +0.0
243,026 - GFF2817 0.36 -0.5
243,037 + GFF2817 0.38 -0.9
243,037 + GFF2817 0.38 -0.1
243,037 + GFF2817 0.38 -1.1
243,037 + GFF2817 0.38 -0.5
243,038 - GFF2817 0.39 +0.3
243,038 - GFF2817 0.39 -0.8
243,038 - GFF2817 0.39 -0.6
243,038 - GFF2817 0.39 -0.2
243,038 - GFF2817 0.39 +2.9
243,038 - GFF2817 0.39 +1.7
243,038 - GFF2817 0.39 -1.8
243,038 - GFF2817 0.39 -1.6
243,287 + +0.2
243,287 + -0.4
243,287 + -1.6
243,288 - +0.8
243,288 - +0.5
243,288 - +0.7
243,288 - +0.4
243,380 + -0.3
243,381 - +0.1
243,586 + -0.5
243,586 + -0.1
243,586 + +0.1
243,586 + -0.1
243,586 + -1.2
243,586 + +0.7
243,586 + +0.4
243,586 + -0.4
243,586 + -0.3
243,586 + +0.0
243,586 + -0.1
243,586 + +0.5
243,586 + +1.1
243,586 + +0.4
243,587 - -1.1
243,587 - -1.4
243,587 - +0.1
243,587 - +0.2
243,587 - +1.9
243,587 - -1.3
243,994 + GFF2818 0.23 +0.4
244,046 - GFF2818 0.25 -1.2
244,072 + GFF2818 0.26 -1.3
244,168 + GFF2818 0.30 +0.4
244,168 + GFF2818 0.30 -0.4
244,168 + GFF2818 0.30 -0.4
244,168 + GFF2818 0.30 +1.4
244,168 + GFF2818 0.30 -1.9
244,168 + GFF2818 0.30 -0.8
244,168 + GFF2818 0.30 +0.1
244,168 + GFF2818 0.30 +0.0
244,168 + GFF2818 0.30 -0.5
244,168 + GFF2818 0.30 +0.5
244,168 + GFF2818 0.30 -0.6
244,168 + GFF2818 0.30 -0.9
244,168 + GFF2818 0.30 +0.6
244,169 - GFF2818 0.30 -0.2
244,169 - GFF2818 0.30 -1.0
244,169 - GFF2818 0.30 -0.3
244,169 - GFF2818 0.30 +1.4
244,169 - GFF2818 0.30 +0.7
244,243 + GFF2818 0.33 +0.5
244,244 - GFF2818 0.33 -0.3

Or see this region's nucleotide sequence