Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2766 and GFF2767 are separated by 9 nucleotides GFF2767 and GFF2768 are separated by 38 nucleotides GFF2768 and GFF2769 are separated by 92 nucleotides GFF2769 and GFF2770 are separated by 75 nucleotides
GFF2766 - Pentapeptide repeat family protein, at 196,869 to 197,555
GFF2766
GFF2767 - MaoC domain protein dehydratase, at 197,565 to 198,044
GFF2767
GFF2768 - 3-ketoacyl-CoA thiolase 2 [fadN-fadA-fadE operon] (EC 2.3.1.16), at 198,083 to 199,216
GFF2768
GFF2769 - Transcriptional regulator, AcrR family, at 199,309 to 199,896
GFF2769
GFF2770 - BUG/TctC family periplasmic protein, at 199,972 to 200,964
GFF2770
Position (kb) 198
199
200 Strain fitness (log2 ratio) -2
-1
0
1
2 at 198.004 kb on + strand at 198.004 kb on + strand at 198.005 kb on - strand at 198.005 kb on - strand at 198.005 kb on - strand at 198.005 kb on - strand at 198.005 kb on - strand at 198.147 kb on + strand at 198.792 kb on + strand, within GFF2768 at 198.792 kb on + strand, within GFF2768 at 198.792 kb on + strand, within GFF2768 at 198.793 kb on - strand, within GFF2768 at 198.793 kb on - strand, within GFF2768 at 198.793 kb on - strand, within GFF2768 at 198.793 kb on - strand, within GFF2768 at 198.793 kb on - strand, within GFF2768 at 198.793 kb on - strand, within GFF2768 at 198.793 kb on - strand, within GFF2768 at 198.793 kb on - strand, within GFF2768 at 198.793 kb on - strand, within GFF2768 at 198.793 kb on - strand, within GFF2768 at 198.793 kb on - strand, within GFF2768 at 198.793 kb on - strand, within GFF2768 at 198.793 kb on - strand, within GFF2768 at 199.047 kb on + strand, within GFF2768 at 199.234 kb on - strand at 199.415 kb on + strand, within GFF2769 at 199.415 kb on + strand, within GFF2769 at 199.415 kb on + strand, within GFF2769 at 199.415 kb on + strand, within GFF2769 at 199.415 kb on + strand, within GFF2769 at 199.415 kb on + strand, within GFF2769 at 199.415 kb on + strand, within GFF2769 at 199.415 kb on + strand, within GFF2769 at 199.415 kb on + strand, within GFF2769 at 199.415 kb on + strand, within GFF2769 at 199.416 kb on - strand, within GFF2769 at 199.416 kb on - strand, within GFF2769 at 199.416 kb on - strand, within GFF2769 at 199.416 kb on - strand, within GFF2769 at 199.416 kb on - strand, within GFF2769 at 199.416 kb on - strand, within GFF2769 at 199.416 kb on - strand, within GFF2769 at 199.416 kb on - strand, within GFF2769 at 199.416 kb on - strand, within GFF2769 at 199.416 kb on - strand, within GFF2769 at 199.416 kb on - strand, within GFF2769 at 199.610 kb on + strand, within GFF2769 at 199.610 kb on + strand, within GFF2769 at 199.610 kb on + strand, within GFF2769 at 199.610 kb on + strand, within GFF2769 at 199.610 kb on + strand, within GFF2769 at 199.611 kb on - strand, within GFF2769 at 199.611 kb on - strand, within GFF2769 at 199.611 kb on - strand, within GFF2769 at 199.611 kb on - strand, within GFF2769 at 199.739 kb on + strand, within GFF2769 at 199.739 kb on + strand, within GFF2769 at 199.739 kb on + strand, within GFF2769 at 199.740 kb on - strand, within GFF2769 at 199.740 kb on - strand, within GFF2769 at 199.740 kb on - strand, within GFF2769 at 199.740 kb on - strand, within GFF2769 at 199.799 kb on + strand, within GFF2769 at 199.800 kb on - strand, within GFF2769 at 199.898 kb on + strand at 199.898 kb on + strand at 199.898 kb on + strand at 199.899 kb on - strand at 199.899 kb on - strand at 199.899 kb on - strand at 199.902 kb on + strand at 199.906 kb on - strand at 199.906 kb on - strand at 199.907 kb on + strand at 199.907 kb on + strand at 199.908 kb on - strand at 199.908 kb on - strand at 199.908 kb on - strand at 200.036 kb on + strand at 200.141 kb on + strand, within GFF2770 at 200.141 kb on + strand, within GFF2770 at 200.141 kb on + strand, within GFF2770 at 200.142 kb on - strand, within GFF2770 at 200.142 kb on - strand, within GFF2770 at 200.142 kb on - strand, within GFF2770 at 200.142 kb on - strand, within GFF2770 at 200.216 kb on + strand, within GFF2770 at 200.216 kb on + strand, within GFF2770 at 200.216 kb on + strand, within GFF2770
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 198,004 + +0.1 198,004 + -0.8 198,005 - +0.3 198,005 - -0.3 198,005 - -1.7 198,005 - -0.8 198,005 - -0.9 198,147 + +0.3 198,792 + GFF2768 0.63 +0.1 198,792 + GFF2768 0.63 -0.2 198,792 + GFF2768 0.63 +0.9 198,793 - GFF2768 0.63 +0.6 198,793 - GFF2768 0.63 +1.5 198,793 - GFF2768 0.63 +0.5 198,793 - GFF2768 0.63 -0.1 198,793 - GFF2768 0.63 +0.4 198,793 - GFF2768 0.63 +0.6 198,793 - GFF2768 0.63 -0.6 198,793 - GFF2768 0.63 +1.3 198,793 - GFF2768 0.63 -0.3 198,793 - GFF2768 0.63 +0.3 198,793 - GFF2768 0.63 +0.6 198,793 - GFF2768 0.63 -0.4 198,793 - GFF2768 0.63 -0.6 199,047 + GFF2768 0.85 -0.7 199,234 - +1.9 199,415 + GFF2769 0.18 -0.6 199,415 + GFF2769 0.18 -0.8 199,415 + GFF2769 0.18 -0.6 199,415 + GFF2769 0.18 +1.3 199,415 + GFF2769 0.18 -0.1 199,415 + GFF2769 0.18 -0.2 199,415 + GFF2769 0.18 -0.2 199,415 + GFF2769 0.18 +0.5 199,415 + GFF2769 0.18 +0.1 199,415 + GFF2769 0.18 -0.7 199,416 - GFF2769 0.18 +0.0 199,416 - GFF2769 0.18 +0.3 199,416 - GFF2769 0.18 +0.0 199,416 - GFF2769 0.18 +0.3 199,416 - GFF2769 0.18 -0.3 199,416 - GFF2769 0.18 -1.1 199,416 - GFF2769 0.18 -0.3 199,416 - GFF2769 0.18 -0.5 199,416 - GFF2769 0.18 +0.3 199,416 - GFF2769 0.18 -0.5 199,416 - GFF2769 0.18 +0.6 199,610 + GFF2769 0.51 -0.1 199,610 + GFF2769 0.51 -0.6 199,610 + GFF2769 0.51 +0.7 199,610 + GFF2769 0.51 -0.2 199,610 + GFF2769 0.51 -0.5 199,611 - GFF2769 0.51 -1.0 199,611 - GFF2769 0.51 -0.4 199,611 - GFF2769 0.51 -0.8 199,611 - GFF2769 0.51 -0.4 199,739 + GFF2769 0.73 -0.5 199,739 + GFF2769 0.73 -0.7 199,739 + GFF2769 0.73 -0.5 199,740 - GFF2769 0.73 -0.1 199,740 - GFF2769 0.73 -0.1 199,740 - GFF2769 0.73 +0.5 199,740 - GFF2769 0.73 +0.6 199,799 + GFF2769 0.83 +0.0 199,800 - GFF2769 0.84 +0.3 199,898 + -1.4 199,898 + +0.7 199,898 + +0.5 199,899 - -0.1 199,899 - -0.0 199,899 - +0.4 199,902 + +1.9 199,906 - -0.9 199,906 - -0.6 199,907 + +0.6 199,907 + +0.2 199,908 - +0.3 199,908 - -0.3 199,908 - -1.3 200,036 + -0.0 200,141 + GFF2770 0.17 -0.3 200,141 + GFF2770 0.17 -0.3 200,141 + GFF2770 0.17 +0.2 200,142 - GFF2770 0.17 +1.2 200,142 - GFF2770 0.17 -0.5 200,142 - GFF2770 0.17 -0.4 200,142 - GFF2770 0.17 -0.4 200,216 + GFF2770 0.25 -2.0 200,216 + GFF2770 0.25 +0.6 200,216 + GFF2770 0.25 -0.3
Or see this region's nucleotide sequence