Strain Fitness in Variovorax sp. SCN45 around GFF2731

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2730 and GFF2731 are separated by 66 nucleotidesGFF2731 and GFF2732 are separated by 14 nucleotidesGFF2732 and GFF2733 are separated by 19 nucleotides GFF2730 - DNA topoisomerase IV subunit A (EC 5.99.1.3), at 163,971 to 166,376 GFF2730 GFF2731 - hypothetical protein, at 166,443 to 167,564 GFF2731 GFF2732 - Soluble lytic murein transglycosylase (EC 4.2.2.n1), at 167,579 to 168,481 GFF2732 GFF2733 - no description, at 168,501 to 168,959 GFF2733 Position (kb) 166 167 168Strain fitness (log2 ratio) -2 -1 0 1 2at 165.886 kb on + strand, within GFF2730at 165.886 kb on + strand, within GFF2730at 165.887 kb on - strand, within GFF2730at 165.967 kb on + strand, within GFF2730at 165.968 kb on - strand, within GFF2730at 165.968 kb on - strand, within GFF2730at 166.205 kb on - strandat 166.291 kb on + strandat 166.292 kb on - strandat 166.516 kb on + strandat 166.516 kb on + strandat 166.516 kb on + strandat 166.516 kb on + strandat 166.516 kb on + strandat 166.517 kb on - strandat 166.517 kb on - strandat 166.517 kb on - strandat 166.517 kb on - strandat 166.517 kb on - strandat 166.517 kb on - strandat 166.517 kb on - strandat 166.517 kb on - strandat 166.606 kb on + strand, within GFF2731at 166.606 kb on + strand, within GFF2731at 166.606 kb on + strand, within GFF2731at 166.607 kb on - strand, within GFF2731at 166.607 kb on - strand, within GFF2731at 166.607 kb on - strand, within GFF2731at 166.607 kb on - strand, within GFF2731at 166.612 kb on + strand, within GFF2731at 166.699 kb on + strand, within GFF2731at 166.699 kb on + strand, within GFF2731at 166.700 kb on - strand, within GFF2731at 166.746 kb on + strand, within GFF2731at 166.746 kb on + strand, within GFF2731at 166.746 kb on + strand, within GFF2731at 166.747 kb on - strand, within GFF2731at 166.747 kb on - strand, within GFF2731at 166.747 kb on - strand, within GFF2731at 166.774 kb on + strand, within GFF2731at 166.774 kb on + strand, within GFF2731at 166.774 kb on + strand, within GFF2731at 166.774 kb on + strand, within GFF2731at 166.774 kb on + strand, within GFF2731at 166.775 kb on - strand, within GFF2731at 166.775 kb on - strand, within GFF2731at 166.798 kb on + strand, within GFF2731at 166.798 kb on + strand, within GFF2731at 166.798 kb on + strand, within GFF2731at 166.798 kb on + strand, within GFF2731at 166.798 kb on + strand, within GFF2731at 166.799 kb on - strand, within GFF2731at 166.799 kb on - strand, within GFF2731at 166.799 kb on - strand, within GFF2731at 166.799 kb on - strand, within GFF2731at 166.844 kb on + strand, within GFF2731at 166.921 kb on + strand, within GFF2731at 166.921 kb on + strand, within GFF2731at 166.921 kb on + strand, within GFF2731at 166.922 kb on - strand, within GFF2731at 166.922 kb on - strand, within GFF2731at 166.922 kb on - strand, within GFF2731at 166.922 kb on - strand, within GFF2731at 166.922 kb on - strand, within GFF2731at 166.922 kb on - strand, within GFF2731at 167.074 kb on + strand, within GFF2731at 167.074 kb on + strand, within GFF2731at 167.075 kb on - strand, within GFF2731at 167.075 kb on - strand, within GFF2731at 167.075 kb on - strand, within GFF2731at 167.075 kb on - strand, within GFF2731at 167.075 kb on - strand, within GFF2731at 167.075 kb on - strand, within GFF2731at 167.075 kb on - strand, within GFF2731at 167.075 kb on - strand, within GFF2731at 167.080 kb on + strand, within GFF2731at 167.080 kb on + strand, within GFF2731at 167.080 kb on + strand, within GFF2731at 167.080 kb on + strand, within GFF2731at 167.080 kb on + strand, within GFF2731at 167.080 kb on + strand, within GFF2731at 167.080 kb on + strand, within GFF2731at 167.080 kb on + strand, within GFF2731at 167.080 kb on + strand, within GFF2731at 167.081 kb on - strand, within GFF2731at 167.081 kb on - strand, within GFF2731at 167.081 kb on - strand, within GFF2731at 167.081 kb on - strand, within GFF2731at 167.081 kb on - strand, within GFF2731at 167.081 kb on - strand, within GFF2731at 167.131 kb on + strand, within GFF2731at 167.131 kb on + strand, within GFF2731at 167.131 kb on + strand, within GFF2731at 167.131 kb on + strand, within GFF2731at 167.131 kb on + strand, within GFF2731at 167.132 kb on - strand, within GFF2731at 167.132 kb on - strand, within GFF2731at 167.132 kb on - strand, within GFF2731at 167.221 kb on + strand, within GFF2731at 167.221 kb on + strand, within GFF2731at 167.221 kb on + strand, within GFF2731at 167.221 kb on + strand, within GFF2731at 167.221 kb on + strand, within GFF2731at 167.221 kb on + strand, within GFF2731at 167.222 kb on - strand, within GFF2731at 167.222 kb on - strand, within GFF2731at 167.222 kb on - strand, within GFF2731at 167.222 kb on - strand, within GFF2731at 167.222 kb on - strand, within GFF2731at 167.222 kb on - strand, within GFF2731at 167.222 kb on - strand, within GFF2731at 167.222 kb on - strand, within GFF2731at 167.222 kb on - strand, within GFF2731at 167.222 kb on - strand, within GFF2731at 167.222 kb on - strand, within GFF2731at 167.222 kb on - strand, within GFF2731at 167.222 kb on - strand, within GFF2731at 167.222 kb on - strand, within GFF2731at 167.234 kb on - strand, within GFF2731at 167.234 kb on - strand, within GFF2731at 167.234 kb on - strand, within GFF2731at 167.234 kb on - strand, within GFF2731at 167.234 kb on - strand, within GFF2731at 167.234 kb on - strand, within GFF2731at 167.447 kb on - strand, within GFF2731at 167.447 kb on - strand, within GFF2731at 167.799 kb on + strand, within GFF2732at 167.799 kb on + strand, within GFF2732at 167.799 kb on + strand, within GFF2732at 167.799 kb on + strand, within GFF2732at 167.799 kb on + strand, within GFF2732at 167.799 kb on + strand, within GFF2732at 167.800 kb on - strand, within GFF2732at 167.800 kb on - strand, within GFF2732at 167.800 kb on - strand, within GFF2732at 167.805 kb on + strand, within GFF2732at 167.805 kb on + strand, within GFF2732at 167.805 kb on + strand, within GFF2732at 167.805 kb on + strand, within GFF2732at 167.805 kb on + strand, within GFF2732at 167.805 kb on + strand, within GFF2732at 167.805 kb on + strand, within GFF2732at 167.805 kb on + strand, within GFF2732at 167.805 kb on + strand, within GFF2732at 167.806 kb on - strand, within GFF2732at 167.806 kb on - strand, within GFF2732at 167.806 kb on - strand, within GFF2732at 167.806 kb on - strand, within GFF2732at 167.806 kb on - strand, within GFF2732at 167.829 kb on + strand, within GFF2732at 167.829 kb on + strand, within GFF2732at 167.829 kb on + strand, within GFF2732at 167.829 kb on + strand, within GFF2732at 167.829 kb on + strand, within GFF2732at 167.829 kb on + strand, within GFF2732at 167.829 kb on + strand, within GFF2732at 167.830 kb on - strand, within GFF2732at 167.830 kb on - strand, within GFF2732at 167.830 kb on - strand, within GFF2732at 167.830 kb on - strand, within GFF2732at 167.830 kb on - strand, within GFF2732at 167.830 kb on - strand, within GFF2732at 167.830 kb on - strand, within GFF2732at 167.847 kb on + strand, within GFF2732at 167.847 kb on + strand, within GFF2732at 167.847 kb on + strand, within GFF2732at 167.847 kb on + strand, within GFF2732at 167.847 kb on + strand, within GFF2732at 167.848 kb on - strand, within GFF2732at 167.848 kb on - strand, within GFF2732at 167.898 kb on + strand, within GFF2732at 167.898 kb on + strand, within GFF2732at 167.899 kb on - strand, within GFF2732at 167.899 kb on - strand, within GFF2732at 167.899 kb on - strand, within GFF2732at 167.899 kb on - strand, within GFF2732at 167.955 kb on + strand, within GFF2732at 167.955 kb on + strand, within GFF2732at 167.972 kb on + strand, within GFF2732at 167.972 kb on + strand, within GFF2732at 167.972 kb on + strand, within GFF2732at 167.973 kb on - strand, within GFF2732at 167.973 kb on - strand, within GFF2732at 167.973 kb on - strand, within GFF2732at 168.147 kb on + strand, within GFF2732at 168.147 kb on + strand, within GFF2732at 168.147 kb on + strand, within GFF2732at 168.147 kb on + strand, within GFF2732at 168.148 kb on - strand, within GFF2732at 168.201 kb on + strand, within GFF2732at 168.201 kb on + strand, within GFF2732at 168.202 kb on - strand, within GFF2732at 168.202 kb on - strand, within GFF2732at 168.343 kb on - strand, within GFF2732at 168.396 kb on + strandat 168.396 kb on + strandat 168.396 kb on + strandat 168.397 kb on - strandat 168.397 kb on - strandat 168.402 kb on + strandat 168.402 kb on + strandat 168.402 kb on + strandat 168.402 kb on + strandat 168.402 kb on + strandat 168.402 kb on + strandat 168.402 kb on + strandat 168.402 kb on + strandat 168.403 kb on - strandat 168.403 kb on - strandat 168.403 kb on - strandat 168.403 kb on - strandat 168.403 kb on - strandat 168.403 kb on - strandat 168.403 kb on - strandat 168.403 kb on - strandat 168.403 kb on - strandat 168.403 kb on - strandat 168.474 kb on + strandat 168.474 kb on + strandat 168.475 kb on - strandat 168.475 kb on - strandat 168.475 kb on - strandat 168.502 kb on + strandat 168.502 kb on + strandat 168.503 kb on - strandat 168.517 kb on + strandat 168.518 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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165,886 + GFF2730 0.80 +1.9
165,886 + GFF2730 0.80 +0.2
165,887 - GFF2730 0.80 -0.9
165,967 + GFF2730 0.83 -0.7
165,968 - GFF2730 0.83 -0.9
165,968 - GFF2730 0.83 -1.0
166,205 - -1.4
166,291 + +0.7
166,292 - +0.9
166,516 + +0.9
166,516 + +0.0
166,516 + -0.0
166,516 + +1.0
166,516 + +1.4
166,517 - -0.7
166,517 - +1.6
166,517 - +0.2
166,517 - +1.7
166,517 - -2.0
166,517 - +0.9
166,517 - +0.5
166,517 - -0.4
166,606 + GFF2731 0.15 -0.9
166,606 + GFF2731 0.15 -0.3
166,606 + GFF2731 0.15 -0.1
166,607 - GFF2731 0.15 +0.9
166,607 - GFF2731 0.15 +0.6
166,607 - GFF2731 0.15 +0.2
166,607 - GFF2731 0.15 -0.4
166,612 + GFF2731 0.15 +0.3
166,699 + GFF2731 0.23 +0.1
166,699 + GFF2731 0.23 +0.8
166,700 - GFF2731 0.23 +0.0
166,746 + GFF2731 0.27 +0.0
166,746 + GFF2731 0.27 +0.4
166,746 + GFF2731 0.27 +0.2
166,747 - GFF2731 0.27 +0.5
166,747 - GFF2731 0.27 +1.2
166,747 - GFF2731 0.27 -0.3
166,774 + GFF2731 0.30 -2.1
166,774 + GFF2731 0.30 -0.2
166,774 + GFF2731 0.30 +0.9
166,774 + GFF2731 0.30 +0.2
166,774 + GFF2731 0.30 +0.7
166,775 - GFF2731 0.30 -0.1
166,775 - GFF2731 0.30 -0.9
166,798 + GFF2731 0.32 +0.0
166,798 + GFF2731 0.32 -0.8
166,798 + GFF2731 0.32 -1.3
166,798 + GFF2731 0.32 -0.1
166,798 + GFF2731 0.32 -0.1
166,799 - GFF2731 0.32 +1.3
166,799 - GFF2731 0.32 -1.6
166,799 - GFF2731 0.32 +0.6
166,799 - GFF2731 0.32 +0.3
166,844 + GFF2731 0.36 +0.4
166,921 + GFF2731 0.43 -0.3
166,921 + GFF2731 0.43 -0.2
166,921 + GFF2731 0.43 +0.6
166,922 - GFF2731 0.43 +0.2
166,922 - GFF2731 0.43 +0.6
166,922 - GFF2731 0.43 -1.3
166,922 - GFF2731 0.43 +0.1
166,922 - GFF2731 0.43 -0.1
166,922 - GFF2731 0.43 -0.3
167,074 + GFF2731 0.56 +1.2
167,074 + GFF2731 0.56 -0.1
167,075 - GFF2731 0.56 -0.1
167,075 - GFF2731 0.56 +0.2
167,075 - GFF2731 0.56 +0.6
167,075 - GFF2731 0.56 +0.1
167,075 - GFF2731 0.56 +0.3
167,075 - GFF2731 0.56 -1.7
167,075 - GFF2731 0.56 -0.1
167,075 - GFF2731 0.56 +0.6
167,080 + GFF2731 0.57 -0.2
167,080 + GFF2731 0.57 +0.3
167,080 + GFF2731 0.57 -0.4
167,080 + GFF2731 0.57 +0.3
167,080 + GFF2731 0.57 -0.6
167,080 + GFF2731 0.57 -0.1
167,080 + GFF2731 0.57 +1.2
167,080 + GFF2731 0.57 -0.4
167,080 + GFF2731 0.57 -0.0
167,081 - GFF2731 0.57 +0.1
167,081 - GFF2731 0.57 +0.2
167,081 - GFF2731 0.57 +0.7
167,081 - GFF2731 0.57 -0.6
167,081 - GFF2731 0.57 -0.1
167,081 - GFF2731 0.57 +0.0
167,131 + GFF2731 0.61 -1.0
167,131 + GFF2731 0.61 +1.2
167,131 + GFF2731 0.61 +0.8
167,131 + GFF2731 0.61 -1.6
167,131 + GFF2731 0.61 +0.7
167,132 - GFF2731 0.61 -0.3
167,132 - GFF2731 0.61 +0.3
167,132 - GFF2731 0.61 +0.7
167,221 + GFF2731 0.69 +0.2
167,221 + GFF2731 0.69 +0.2
167,221 + GFF2731 0.69 -0.5
167,221 + GFF2731 0.69 +0.0
167,221 + GFF2731 0.69 +1.5
167,221 + GFF2731 0.69 +2.6
167,222 - GFF2731 0.69 -0.0
167,222 - GFF2731 0.69 -0.5
167,222 - GFF2731 0.69 -0.0
167,222 - GFF2731 0.69 +0.7
167,222 - GFF2731 0.69 -0.9
167,222 - GFF2731 0.69 +1.2
167,222 - GFF2731 0.69 -0.5
167,222 - GFF2731 0.69 -0.6
167,222 - GFF2731 0.69 +0.1
167,222 - GFF2731 0.69 -0.2
167,222 - GFF2731 0.69 -0.4
167,222 - GFF2731 0.69 +0.6
167,222 - GFF2731 0.69 -1.6
167,222 - GFF2731 0.69 +0.2
167,234 - GFF2731 0.70 -0.4
167,234 - GFF2731 0.70 -0.8
167,234 - GFF2731 0.70 -0.5
167,234 - GFF2731 0.70 -0.2
167,234 - GFF2731 0.70 -0.6
167,234 - GFF2731 0.70 -0.1
167,447 - GFF2731 0.89 -0.4
167,447 - GFF2731 0.89 +0.7
167,799 + GFF2732 0.24 +0.7
167,799 + GFF2732 0.24 +1.0
167,799 + GFF2732 0.24 +0.0
167,799 + GFF2732 0.24 -0.9
167,799 + GFF2732 0.24 +0.6
167,799 + GFF2732 0.24 +0.3
167,800 - GFF2732 0.24 +1.1
167,800 - GFF2732 0.24 -0.3
167,800 - GFF2732 0.24 -0.1
167,805 + GFF2732 0.25 -0.0
167,805 + GFF2732 0.25 -0.6
167,805 + GFF2732 0.25 +0.2
167,805 + GFF2732 0.25 +0.1
167,805 + GFF2732 0.25 +0.7
167,805 + GFF2732 0.25 -0.4
167,805 + GFF2732 0.25 +0.1
167,805 + GFF2732 0.25 +0.6
167,805 + GFF2732 0.25 +1.2
167,806 - GFF2732 0.25 -0.9
167,806 - GFF2732 0.25 -0.0
167,806 - GFF2732 0.25 -1.5
167,806 - GFF2732 0.25 -0.3
167,806 - GFF2732 0.25 +1.5
167,829 + GFF2732 0.28 -0.6
167,829 + GFF2732 0.28 -0.9
167,829 + GFF2732 0.28 -1.4
167,829 + GFF2732 0.28 +0.9
167,829 + GFF2732 0.28 +0.4
167,829 + GFF2732 0.28 -0.4
167,829 + GFF2732 0.28 +0.3
167,830 - GFF2732 0.28 +1.8
167,830 - GFF2732 0.28 +0.9
167,830 - GFF2732 0.28 +1.7
167,830 - GFF2732 0.28 -0.3
167,830 - GFF2732 0.28 +0.2
167,830 - GFF2732 0.28 -0.9
167,830 - GFF2732 0.28 -0.3
167,847 + GFF2732 0.30 -0.0
167,847 + GFF2732 0.30 -1.5
167,847 + GFF2732 0.30 -0.4
167,847 + GFF2732 0.30 -0.3
167,847 + GFF2732 0.30 +0.7
167,848 - GFF2732 0.30 -0.5
167,848 - GFF2732 0.30 +0.8
167,898 + GFF2732 0.35 +0.8
167,898 + GFF2732 0.35 -0.6
167,899 - GFF2732 0.35 +2.6
167,899 - GFF2732 0.35 -0.4
167,899 - GFF2732 0.35 -0.1
167,899 - GFF2732 0.35 -0.1
167,955 + GFF2732 0.42 +0.5
167,955 + GFF2732 0.42 +0.2
167,972 + GFF2732 0.44 -0.6
167,972 + GFF2732 0.44 -1.1
167,972 + GFF2732 0.44 +0.1
167,973 - GFF2732 0.44 +0.3
167,973 - GFF2732 0.44 +0.0
167,973 - GFF2732 0.44 -0.0
168,147 + GFF2732 0.63 +1.9
168,147 + GFF2732 0.63 +1.3
168,147 + GFF2732 0.63 -0.1
168,147 + GFF2732 0.63 -1.7
168,148 - GFF2732 0.63 +0.3
168,201 + GFF2732 0.69 +0.4
168,201 + GFF2732 0.69 +0.4
168,202 - GFF2732 0.69 +1.3
168,202 - GFF2732 0.69 +0.3
168,343 - GFF2732 0.85 -0.1
168,396 + -0.4
168,396 + +1.3
168,396 + +0.3
168,397 - -0.3
168,397 - -0.1
168,402 + -1.0
168,402 + -0.2
168,402 + +2.3
168,402 + -0.4
168,402 + +0.8
168,402 + +0.0
168,402 + +0.4
168,402 + +0.2
168,403 - +0.1
168,403 - +0.9
168,403 - +1.3
168,403 - +0.2
168,403 - +0.2
168,403 - +0.1
168,403 - -0.4
168,403 - +0.1
168,403 - +0.5
168,403 - -0.0
168,474 + +0.9
168,474 + -0.3
168,475 - -0.9
168,475 - +0.3
168,475 - -0.2
168,502 + +0.4
168,502 + -0.2
168,503 - -0.1
168,517 + +0.6
168,518 - -0.4

Or see this region's nucleotide sequence