Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2715 and GFF2716 are separated by 5 nucleotides GFF2716 and GFF2717 are separated by 19 nucleotides GFF2717 and GFF2718 overlap by 1 nucleotides GFF2718 and GFF2719 are separated by 36 nucleotides
GFF2715 - 2-ketogluconate 6-phosphate reductase (EC 1.1.1.43), at 148,799 to 149,782
GFF2715
GFF2716 - 2-dehydro-3-deoxygluconokinase (EC 2.7.1.45), at 149,788 to 150,741
GFF2716
GFF2717 - Epimerase KguE, at 150,761 to 151,510
GFF2717
GFF2718 - ABC transporter, ATP-binding protein (cluster 3, basic aa/glutamine/opines), at 151,510 to 152,265
GFF2718
GFF2719 - ABC transporter, substrate-binding protein (cluster 3, basic aa/glutamine/opines), at 152,302 to 153,099
GFF2719
Position (kb) 150
151
152 Strain fitness (log2 ratio) -1
0
1
2 at 150.023 kb on + strand, within GFF2716 at 150.023 kb on + strand, within GFF2716 at 150.024 kb on - strand, within GFF2716 at 150.024 kb on - strand, within GFF2716 at 150.024 kb on - strand, within GFF2716 at 150.026 kb on + strand, within GFF2716 at 150.414 kb on - strand, within GFF2716 at 150.414 kb on - strand, within GFF2716 at 150.729 kb on + strand at 150.729 kb on + strand at 150.729 kb on + strand at 150.762 kb on + strand at 150.763 kb on - strand at 150.763 kb on - strand at 150.785 kb on + strand at 150.785 kb on + strand at 150.786 kb on - strand at 150.966 kb on + strand, within GFF2717 at 150.966 kb on + strand, within GFF2717 at 150.966 kb on + strand, within GFF2717 at 151.329 kb on + strand, within GFF2717 at 151.329 kb on + strand, within GFF2717 at 151.330 kb on - strand, within GFF2717 at 151.853 kb on + strand, within GFF2718 at 151.853 kb on + strand, within GFF2718 at 151.892 kb on + strand, within GFF2718 at 151.892 kb on + strand, within GFF2718 at 151.892 kb on + strand, within GFF2718 at 152.219 kb on + strand at 152.219 kb on + strand at 152.220 kb on - strand at 152.292 kb on - strand at 152.303 kb on + strand at 152.304 kb on - strand at 152.471 kb on + strand, within GFF2719
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 150,023 + GFF2716 0.25 -0.4 150,023 + GFF2716 0.25 +1.1 150,024 - GFF2716 0.25 -0.4 150,024 - GFF2716 0.25 +1.1 150,024 - GFF2716 0.25 +0.8 150,026 + GFF2716 0.25 -0.1 150,414 - GFF2716 0.66 +0.9 150,414 - GFF2716 0.66 +0.0 150,729 + +1.9 150,729 + +0.6 150,729 + +0.5 150,762 + +0.4 150,763 - -0.4 150,763 - +0.7 150,785 + -0.7 150,785 + -0.6 150,786 - +1.7 150,966 + GFF2717 0.27 -0.3 150,966 + GFF2717 0.27 +0.9 150,966 + GFF2717 0.27 +0.8 151,329 + GFF2717 0.76 +0.4 151,329 + GFF2717 0.76 +0.5 151,330 - GFF2717 0.76 +0.1 151,853 + GFF2718 0.45 -0.4 151,853 + GFF2718 0.45 -0.2 151,892 + GFF2718 0.51 +0.0 151,892 + GFF2718 0.51 +0.2 151,892 + GFF2718 0.51 -0.5 152,219 + +0.6 152,219 + -0.1 152,220 - +0.5 152,292 - +0.8 152,303 + +1.6 152,304 - -0.7 152,471 + GFF2719 0.21 +0.6
Or see this region's nucleotide sequence