Strain Fitness in Variovorax sp. SCN45 around GFF2681

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2679 and GFF2680 are separated by 30 nucleotidesGFF2680 and GFF2681 are separated by 278 nucleotidesGFF2681 and GFF2682 are separated by 37 nucleotides GFF2679 - Glycerol kinase (EC 2.7.1.30), at 101,400 to 102,896 GFF2679 GFF2680 - Protein of unknown function DUF1058, at 102,927 to 103,388 GFF2680 GFF2681 - Phosphoethanolamine transferase EptC [E.coli], specific for LPS heptose I residue, at 103,667 to 105,241 GFF2681 GFF2682 - Protein containing domains DUF403, at 105,279 to 106,235 GFF2682 Position (kb) 103 104 105 106Strain fitness (log2 ratio) -2 -1 0 1 2at 102.738 kb on + strand, within GFF2679at 102.739 kb on - strand, within GFF2679at 102.739 kb on - strand, within GFF2679at 102.739 kb on - strand, within GFF2679at 102.739 kb on - strand, within GFF2679at 102.765 kb on + strandat 102.765 kb on + strandat 102.766 kb on - strandat 102.929 kb on - strandat 102.929 kb on - strandat 103.033 kb on + strand, within GFF2680at 103.471 kb on + strandat 103.472 kb on - strandat 103.862 kb on + strand, within GFF2681at 103.862 kb on + strand, within GFF2681at 103.862 kb on + strand, within GFF2681at 103.863 kb on - strand, within GFF2681at 103.863 kb on - strand, within GFF2681at 103.863 kb on - strand, within GFF2681at 103.877 kb on + strand, within GFF2681at 103.877 kb on + strand, within GFF2681at 103.877 kb on + strand, within GFF2681at 103.877 kb on + strand, within GFF2681at 103.877 kb on + strand, within GFF2681at 103.877 kb on + strand, within GFF2681at 103.878 kb on - strand, within GFF2681at 103.878 kb on - strand, within GFF2681at 103.878 kb on - strand, within GFF2681at 103.878 kb on - strand, within GFF2681at 103.949 kb on + strand, within GFF2681at 103.950 kb on - strand, within GFF2681at 103.950 kb on - strand, within GFF2681at 104.120 kb on + strand, within GFF2681at 104.120 kb on + strand, within GFF2681at 104.121 kb on - strand, within GFF2681at 104.339 kb on + strand, within GFF2681at 104.345 kb on + strand, within GFF2681at 104.531 kb on + strand, within GFF2681at 104.531 kb on + strand, within GFF2681at 104.531 kb on + strand, within GFF2681at 104.744 kb on + strand, within GFF2681at 104.744 kb on + strand, within GFF2681at 104.745 kb on - strand, within GFF2681at 104.745 kb on - strand, within GFF2681at 104.858 kb on + strand, within GFF2681at 104.858 kb on + strand, within GFF2681at 104.858 kb on + strand, within GFF2681at 104.859 kb on - strand, within GFF2681at 104.859 kb on - strand, within GFF2681at 104.876 kb on + strand, within GFF2681at 104.877 kb on - strand, within GFF2681at 104.877 kb on - strand, within GFF2681at 104.954 kb on + strand, within GFF2681at 104.954 kb on + strand, within GFF2681at 104.954 kb on + strand, within GFF2681at 104.954 kb on + strand, within GFF2681at 104.955 kb on - strand, within GFF2681at 104.955 kb on - strand, within GFF2681at 104.955 kb on - strand, within GFF2681at 104.955 kb on - strand, within GFF2681at 104.955 kb on - strand, within GFF2681at 104.955 kb on - strand, within GFF2681at 104.955 kb on - strand, within GFF2681at 104.955 kb on - strand, within GFF2681at 104.955 kb on - strand, within GFF2681at 104.955 kb on - strand, within GFF2681at 105.189 kb on - strandat 105.355 kb on + strandat 105.355 kb on + strandat 105.356 kb on - strandat 105.356 kb on - strandat 105.356 kb on - strandat 105.356 kb on - strandat 105.356 kb on - strandat 105.356 kb on - strandat 105.356 kb on - strandat 105.397 kb on + strand, within GFF2682at 105.583 kb on + strand, within GFF2682at 105.628 kb on + strand, within GFF2682at 105.628 kb on + strand, within GFF2682at 105.628 kb on + strand, within GFF2682at 105.628 kb on + strand, within GFF2682at 105.629 kb on - strand, within GFF2682at 105.637 kb on + strand, within GFF2682at 105.638 kb on - strand, within GFF2682at 105.740 kb on + strand, within GFF2682at 105.740 kb on + strand, within GFF2682at 105.757 kb on + strand, within GFF2682at 105.757 kb on + strand, within GFF2682at 105.758 kb on - strand, within GFF2682at 105.758 kb on - strand, within GFF2682at 106.049 kb on - strand, within GFF2682at 106.060 kb on + strand, within GFF2682at 106.061 kb on - strand, within GFF2682at 106.061 kb on - strand, within GFF2682at 106.061 kb on - strand, within GFF2682at 106.105 kb on + strand, within GFF2682at 106.106 kb on - strand, within GFF2682at 106.106 kb on - strand, within GFF2682at 106.106 kb on - strand, within GFF2682at 106.147 kb on + strandat 106.192 kb on + strandat 106.192 kb on + strandat 106.193 kb on - strandat 106.207 kb on + strandat 106.207 kb on + strandat 106.208 kb on - strandat 106.208 kb on - strandat 106.208 kb on - strandat 106.208 kb on - strandat 106.208 kb on - strandat 106.208 kb on - strandat 106.223 kb on + strandat 106.223 kb on + strandat 106.223 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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102,738 + GFF2679 0.89 -0.6
102,739 - GFF2679 0.89 +0.3
102,739 - GFF2679 0.89 +0.5
102,739 - GFF2679 0.89 +0.3
102,739 - GFF2679 0.89 -0.4
102,765 + -0.4
102,765 + +0.4
102,766 - -0.1
102,929 - +0.1
102,929 - -0.0
103,033 + GFF2680 0.23 +0.6
103,471 + +0.1
103,472 - -0.3
103,862 + GFF2681 0.12 +0.3
103,862 + GFF2681 0.12 -0.0
103,862 + GFF2681 0.12 -0.9
103,863 - GFF2681 0.12 +0.5
103,863 - GFF2681 0.12 +0.1
103,863 - GFF2681 0.12 -0.9
103,877 + GFF2681 0.13 -0.6
103,877 + GFF2681 0.13 +0.7
103,877 + GFF2681 0.13 +0.2
103,877 + GFF2681 0.13 -0.3
103,877 + GFF2681 0.13 -0.0
103,877 + GFF2681 0.13 +0.3
103,878 - GFF2681 0.13 +0.2
103,878 - GFF2681 0.13 -0.6
103,878 - GFF2681 0.13 +0.8
103,878 - GFF2681 0.13 +1.2
103,949 + GFF2681 0.18 +0.3
103,950 - GFF2681 0.18 -0.9
103,950 - GFF2681 0.18 +0.5
104,120 + GFF2681 0.29 -0.9
104,120 + GFF2681 0.29 +0.2
104,121 - GFF2681 0.29 -0.1
104,339 + GFF2681 0.43 +0.7
104,345 + GFF2681 0.43 +0.7
104,531 + GFF2681 0.55 +0.2
104,531 + GFF2681 0.55 +0.4
104,531 + GFF2681 0.55 +0.7
104,744 + GFF2681 0.68 -1.0
104,744 + GFF2681 0.68 -1.6
104,745 - GFF2681 0.68 -0.7
104,745 - GFF2681 0.68 -0.5
104,858 + GFF2681 0.76 -0.7
104,858 + GFF2681 0.76 +1.4
104,858 + GFF2681 0.76 +1.6
104,859 - GFF2681 0.76 +0.7
104,859 - GFF2681 0.76 -0.0
104,876 + GFF2681 0.77 +0.2
104,877 - GFF2681 0.77 +0.2
104,877 - GFF2681 0.77 +0.5
104,954 + GFF2681 0.82 -0.1
104,954 + GFF2681 0.82 +0.1
104,954 + GFF2681 0.82 +0.1
104,954 + GFF2681 0.82 +0.6
104,955 - GFF2681 0.82 -1.2
104,955 - GFF2681 0.82 +0.3
104,955 - GFF2681 0.82 -0.6
104,955 - GFF2681 0.82 +0.9
104,955 - GFF2681 0.82 -1.2
104,955 - GFF2681 0.82 -0.4
104,955 - GFF2681 0.82 -0.9
104,955 - GFF2681 0.82 +0.9
104,955 - GFF2681 0.82 -0.8
104,955 - GFF2681 0.82 -1.1
105,189 - +1.9
105,355 + -0.4
105,355 + +0.7
105,356 - +0.2
105,356 - -2.4
105,356 - +1.4
105,356 - +0.6
105,356 - +1.0
105,356 - -0.4
105,356 - -0.7
105,397 + GFF2682 0.12 -0.4
105,583 + GFF2682 0.32 -0.8
105,628 + GFF2682 0.36 +0.1
105,628 + GFF2682 0.36 -0.6
105,628 + GFF2682 0.36 +0.6
105,628 + GFF2682 0.36 +0.6
105,629 - GFF2682 0.37 +0.1
105,637 + GFF2682 0.37 +0.5
105,638 - GFF2682 0.38 +1.9
105,740 + GFF2682 0.48 +0.2
105,740 + GFF2682 0.48 -1.1
105,757 + GFF2682 0.50 +0.9
105,757 + GFF2682 0.50 -1.0
105,758 - GFF2682 0.50 -1.1
105,758 - GFF2682 0.50 -1.5
106,049 - GFF2682 0.80 +0.0
106,060 + GFF2682 0.82 +0.0
106,061 - GFF2682 0.82 -0.1
106,061 - GFF2682 0.82 +1.1
106,061 - GFF2682 0.82 +0.1
106,105 + GFF2682 0.86 +1.9
106,106 - GFF2682 0.86 +0.3
106,106 - GFF2682 0.86 +1.3
106,106 - GFF2682 0.86 +0.4
106,147 + +0.7
106,192 + -0.0
106,192 + -0.2
106,193 - -0.5
106,207 + -0.2
106,207 + -0.3
106,208 - +0.3
106,208 - -0.1
106,208 - -0.6
106,208 - +0.5
106,208 - +1.3
106,208 - -0.0
106,223 + -0.5
106,223 + -0.6
106,223 + -0.2

Or see this region's nucleotide sequence