Strain Fitness in Variovorax sp. SCN45 around GFF2666

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2665 and GFF2666 are separated by 71 nucleotidesGFF2666 and GFF2667 are separated by 5 nucleotidesGFF2667 and GFF2668 are separated by 9 nucleotides GFF2665 - FIG001454: Transglutaminase-like enzymes, putative cysteine proteases, at 87,493 to 89,514 GFF2665 GFF2666 - Membrane-bound lytic murein transglycosylase B, at 89,586 to 90,668 GFF2666 GFF2667 - COG4339 metal-dependent phosphohydrolase, HD superfamily, at 90,674 to 91,294 GFF2667 GFF2668 - hypothetical protein, at 91,304 to 91,792 GFF2668 Position (kb) 89 90 91Strain fitness (log2 ratio) -2 -1 0 1 2at 88.688 kb on - strand, within GFF2665at 88.693 kb on + strand, within GFF2665at 88.693 kb on + strand, within GFF2665at 88.694 kb on - strand, within GFF2665at 88.694 kb on - strand, within GFF2665at 88.694 kb on - strand, within GFF2665at 88.871 kb on - strand, within GFF2665at 88.871 kb on - strand, within GFF2665at 88.871 kb on - strand, within GFF2665at 88.871 kb on - strand, within GFF2665at 89.113 kb on + strand, within GFF2665at 89.113 kb on + strand, within GFF2665at 89.113 kb on + strand, within GFF2665at 89.114 kb on - strand, within GFF2665at 89.186 kb on - strand, within GFF2665at 89.186 kb on - strand, within GFF2665at 89.186 kb on - strand, within GFF2665at 89.186 kb on - strand, within GFF2665at 89.197 kb on + strand, within GFF2665at 89.198 kb on - strand, within GFF2665at 89.429 kb on - strandat 89.653 kb on + strandat 89.654 kb on - strandat 89.654 kb on - strandat 89.654 kb on - strandat 89.654 kb on - strandat 89.716 kb on - strand, within GFF2666at 89.881 kb on - strand, within GFF2666at 89.973 kb on + strand, within GFF2666at 89.974 kb on - strand, within GFF2666at 90.024 kb on + strand, within GFF2666at 90.024 kb on + strand, within GFF2666at 90.024 kb on + strand, within GFF2666at 90.024 kb on + strand, within GFF2666at 90.024 kb on + strand, within GFF2666at 90.024 kb on + strand, within GFF2666at 90.024 kb on + strand, within GFF2666at 90.024 kb on + strand, within GFF2666at 90.024 kb on + strand, within GFF2666at 90.025 kb on - strand, within GFF2666at 90.025 kb on - strand, within GFF2666at 90.025 kb on - strand, within GFF2666at 90.202 kb on - strand, within GFF2666at 90.202 kb on - strand, within GFF2666at 90.252 kb on + strand, within GFF2666at 90.252 kb on + strand, within GFF2666at 90.330 kb on + strand, within GFF2666at 90.330 kb on + strand, within GFF2666at 90.330 kb on + strand, within GFF2666at 90.373 kb on - strand, within GFF2666at 90.373 kb on - strand, within GFF2666at 90.555 kb on + strand, within GFF2666at 90.555 kb on + strand, within GFF2666at 90.555 kb on + strand, within GFF2666at 90.555 kb on + strand, within GFF2666at 90.556 kb on - strand, within GFF2666at 90.556 kb on - strand, within GFF2666at 90.579 kb on + strandat 90.609 kb on + strandat 90.609 kb on + strandat 90.610 kb on - strandat 90.610 kb on - strandat 90.610 kb on - strandat 90.610 kb on - strandat 90.774 kb on - strand, within GFF2667at 90.794 kb on + strand, within GFF2667at 90.905 kb on + strand, within GFF2667at 91.118 kb on + strand, within GFF2667at 91.119 kb on - strand, within GFF2667at 91.220 kb on + strand, within GFF2667at 91.221 kb on - strand, within GFF2667at 91.221 kb on - strand, within GFF2667at 91.665 kb on + strand, within GFF2668at 91.665 kb on + strand, within GFF2668at 91.666 kb on - strand, within GFF2668at 91.666 kb on - strand, within GFF2668

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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88,688 - GFF2665 0.59 +0.1
88,693 + GFF2665 0.59 -1.9
88,693 + GFF2665 0.59 +1.9
88,694 - GFF2665 0.59 -0.7
88,694 - GFF2665 0.59 +0.5
88,694 - GFF2665 0.59 -1.5
88,871 - GFF2665 0.68 +1.1
88,871 - GFF2665 0.68 -0.1
88,871 - GFF2665 0.68 +0.2
88,871 - GFF2665 0.68 +0.3
89,113 + GFF2665 0.80 +0.3
89,113 + GFF2665 0.80 +0.5
89,113 + GFF2665 0.80 +0.3
89,114 - GFF2665 0.80 -0.3
89,186 - GFF2665 0.84 +0.7
89,186 - GFF2665 0.84 -0.3
89,186 - GFF2665 0.84 -1.0
89,186 - GFF2665 0.84 +1.4
89,197 + GFF2665 0.84 +0.2
89,198 - GFF2665 0.84 -1.2
89,429 - -0.9
89,653 + +1.7
89,654 - -0.3
89,654 - -0.6
89,654 - +0.2
89,654 - +0.3
89,716 - GFF2666 0.12 +0.8
89,881 - GFF2666 0.27 +0.2
89,973 + GFF2666 0.36 -0.4
89,974 - GFF2666 0.36 -0.0
90,024 + GFF2666 0.40 -0.2
90,024 + GFF2666 0.40 -0.3
90,024 + GFF2666 0.40 -0.1
90,024 + GFF2666 0.40 +1.4
90,024 + GFF2666 0.40 -1.0
90,024 + GFF2666 0.40 -0.4
90,024 + GFF2666 0.40 +0.2
90,024 + GFF2666 0.40 +0.2
90,024 + GFF2666 0.40 -0.1
90,025 - GFF2666 0.41 +0.0
90,025 - GFF2666 0.41 -0.4
90,025 - GFF2666 0.41 +1.0
90,202 - GFF2666 0.57 +0.3
90,202 - GFF2666 0.57 +0.9
90,252 + GFF2666 0.61 -1.2
90,252 + GFF2666 0.61 +0.1
90,330 + GFF2666 0.69 +0.9
90,330 + GFF2666 0.69 -1.6
90,330 + GFF2666 0.69 -0.3
90,373 - GFF2666 0.73 +0.2
90,373 - GFF2666 0.73 -1.4
90,555 + GFF2666 0.89 +0.8
90,555 + GFF2666 0.89 +0.9
90,555 + GFF2666 0.89 -0.0
90,555 + GFF2666 0.89 -0.2
90,556 - GFF2666 0.90 -0.5
90,556 - GFF2666 0.90 -0.3
90,579 + -0.4
90,609 + +0.9
90,609 + +1.6
90,610 - -1.8
90,610 - +0.0
90,610 - +0.4
90,610 - -0.0
90,774 - GFF2667 0.16 -0.2
90,794 + GFF2667 0.19 -0.3
90,905 + GFF2667 0.37 -0.1
91,118 + GFF2667 0.71 +0.7
91,119 - GFF2667 0.72 +0.6
91,220 + GFF2667 0.88 -0.6
91,221 - GFF2667 0.88 +0.4
91,221 - GFF2667 0.88 +1.9
91,665 + GFF2668 0.74 +0.3
91,665 + GFF2668 0.74 -0.2
91,666 - GFF2668 0.74 -0.6
91,666 - GFF2668 0.74 +0.4

Or see this region's nucleotide sequence