Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2653 and GFF2654 are separated by 47 nucleotides GFF2654 and GFF2655 overlap by 4 nucleotides
GFF2653 - Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-), at 72,116 to 73,729
GFF2653
GFF2654 - Efflux ABC transporter for glutathione/L-cysteine, essential for assembly of bd-type respiratory oxidases => CydC subunit, at 73,777 to 75,492
GFF2654
GFF2655 - Efflux ABC transporter for glutathione/L-cysteine, essential for assembly of bd-type respiratory oxidases => CydD subunit, at 75,489 to 77,177
GFF2655
Position (kb) 73
74
75
76 Strain fitness (log2 ratio) -1
0
1
2
3 at 72.876 kb on + strand, within GFF2653 at 72.876 kb on + strand, within GFF2653 at 72.876 kb on + strand, within GFF2653 at 73.111 kb on - strand, within GFF2653 at 73.152 kb on + strand, within GFF2653 at 73.152 kb on + strand, within GFF2653 at 73.152 kb on + strand, within GFF2653 at 73.153 kb on - strand, within GFF2653 at 73.153 kb on - strand, within GFF2653 at 73.457 kb on - strand, within GFF2653 at 73.477 kb on - strand, within GFF2653 at 73.479 kb on + strand, within GFF2653 at 73.480 kb on - strand, within GFF2653 at 73.608 kb on + strand at 73.609 kb on - strand at 73.674 kb on + strand at 73.675 kb on - strand at 73.675 kb on - strand at 73.745 kb on + strand at 73.745 kb on + strand at 73.746 kb on - strand at 73.746 kb on - strand at 73.746 kb on - strand at 74.583 kb on + strand, within GFF2654 at 75.054 kb on - strand, within GFF2654 at 75.054 kb on - strand, within GFF2654 at 75.054 kb on - strand, within GFF2654 at 75.094 kb on + strand, within GFF2654 at 75.094 kb on + strand, within GFF2654 at 75.221 kb on + strand, within GFF2654 at 75.378 kb on + strand at 75.378 kb on + strand at 75.378 kb on + strand at 75.379 kb on - strand at 75.379 kb on - strand at 76.281 kb on + strand, within GFF2655 at 76.402 kb on + strand, within GFF2655 at 76.402 kb on + strand, within GFF2655 at 76.402 kb on + strand, within GFF2655 at 76.402 kb on + strand, within GFF2655 at 76.402 kb on + strand, within GFF2655 at 76.402 kb on + strand, within GFF2655 at 76.402 kb on + strand, within GFF2655 at 76.403 kb on - strand, within GFF2655 at 76.403 kb on - strand, within GFF2655 at 76.403 kb on - strand, within GFF2655 at 76.403 kb on - strand, within GFF2655 at 76.403 kb on - strand, within GFF2655 at 76.403 kb on - strand, within GFF2655 at 76.403 kb on - strand, within GFF2655 at 76.403 kb on - strand, within GFF2655
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 72,876 + GFF2653 0.47 +0.1 72,876 + GFF2653 0.47 +0.1 72,876 + GFF2653 0.47 +2.9 73,111 - GFF2653 0.62 +0.5 73,152 + GFF2653 0.64 +0.1 73,152 + GFF2653 0.64 +0.6 73,152 + GFF2653 0.64 -0.6 73,153 - GFF2653 0.64 -1.1 73,153 - GFF2653 0.64 -0.1 73,457 - GFF2653 0.83 -0.1 73,477 - GFF2653 0.84 -1.3 73,479 + GFF2653 0.84 +0.3 73,480 - GFF2653 0.85 -0.5 73,608 + -0.2 73,609 - -0.1 73,674 + -0.6 73,675 - -0.0 73,675 - +0.2 73,745 + +0.7 73,745 + -1.5 73,746 - -0.4 73,746 - -0.2 73,746 - +0.8 74,583 + GFF2654 0.47 +0.8 75,054 - GFF2654 0.74 +0.0 75,054 - GFF2654 0.74 -0.2 75,054 - GFF2654 0.74 -0.9 75,094 + GFF2654 0.77 +1.8 75,094 + GFF2654 0.77 +0.9 75,221 + GFF2654 0.84 -0.6 75,378 + +0.0 75,378 + +2.0 75,378 + -0.2 75,379 - -0.0 75,379 - -0.2 76,281 + GFF2655 0.47 +0.9 76,402 + GFF2655 0.54 -0.3 76,402 + GFF2655 0.54 -0.1 76,402 + GFF2655 0.54 +0.0 76,402 + GFF2655 0.54 +0.1 76,402 + GFF2655 0.54 -0.4 76,402 + GFF2655 0.54 -0.5 76,402 + GFF2655 0.54 -0.4 76,403 - GFF2655 0.54 +0.6 76,403 - GFF2655 0.54 -0.1 76,403 - GFF2655 0.54 +0.1 76,403 - GFF2655 0.54 +0.3 76,403 - GFF2655 0.54 +0.3 76,403 - GFF2655 0.54 +0.0 76,403 - GFF2655 0.54 -0.7 76,403 - GFF2655 0.54 -0.4
Or see this region's nucleotide sequence