Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF263 and GFF264 are separated by 257 nucleotides GFF264 and GFF265 are separated by 103 nucleotides
GFF263 - Secreted and surface protein containing fasciclin-like repeats, at 295,252 to 295,812
GFF263
GFF264 - Efflux transport system, outer membrane factor (OMF) lipoprotein, at 296,070 to 297,680
GFF264
GFF265 - RND efflux system, membrane fusion protein, at 297,784 to 298,941
GFF265
Position (kb) 296
297
298 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 295.178 kb on + strand at 295.179 kb on - strand at 295.179 kb on - strand at 295.179 kb on - strand at 295.220 kb on + strand at 295.220 kb on + strand at 295.220 kb on + strand at 295.220 kb on + strand at 295.220 kb on + strand at 295.220 kb on + strand at 295.221 kb on - strand at 295.221 kb on - strand at 295.231 kb on + strand at 295.231 kb on + strand at 295.231 kb on + strand at 295.232 kb on - strand at 295.232 kb on - strand at 295.253 kb on + strand at 295.253 kb on + strand at 295.253 kb on + strand at 295.253 kb on + strand at 295.253 kb on + strand at 295.253 kb on + strand at 295.253 kb on + strand at 295.253 kb on + strand at 295.253 kb on + strand at 295.253 kb on + strand at 295.253 kb on + strand at 295.253 kb on + strand at 295.253 kb on + strand at 295.253 kb on + strand at 295.253 kb on + strand at 295.254 kb on - strand at 295.254 kb on - strand at 295.254 kb on - strand at 295.254 kb on - strand at 295.254 kb on - strand at 295.254 kb on - strand at 295.254 kb on - strand at 295.254 kb on - strand at 295.254 kb on - strand at 295.254 kb on - strand at 295.254 kb on - strand at 295.304 kb on + strand at 295.484 kb on + strand, within GFF263 at 295.484 kb on + strand, within GFF263 at 295.484 kb on + strand, within GFF263 at 295.484 kb on + strand, within GFF263 at 295.484 kb on + strand, within GFF263 at 295.484 kb on + strand, within GFF263 at 295.484 kb on + strand, within GFF263 at 295.485 kb on - strand, within GFF263 at 295.485 kb on - strand, within GFF263 at 295.485 kb on - strand, within GFF263 at 295.485 kb on - strand, within GFF263 at 295.485 kb on - strand, within GFF263 at 295.485 kb on - strand, within GFF263 at 295.485 kb on - strand, within GFF263 at 295.485 kb on - strand, within GFF263 at 295.485 kb on - strand, within GFF263 at 295.485 kb on - strand, within GFF263 at 295.485 kb on - strand, within GFF263 at 295.485 kb on - strand, within GFF263 at 295.485 kb on - strand, within GFF263 at 295.485 kb on - strand, within GFF263 at 295.692 kb on - strand, within GFF263 at 295.870 kb on + strand at 295.871 kb on - strand at 295.871 kb on - strand at 295.871 kb on - strand at 295.966 kb on + strand at 295.966 kb on + strand at 295.966 kb on + strand at 295.966 kb on + strand at 295.966 kb on + strand at 295.966 kb on + strand at 295.967 kb on - strand at 295.967 kb on - strand at 295.967 kb on - strand at 295.967 kb on - strand at 295.967 kb on - strand at 295.967 kb on - strand at 295.967 kb on - strand at 295.967 kb on - strand at 295.967 kb on - strand at 295.969 kb on + strand at 295.969 kb on + strand at 295.969 kb on + strand at 295.969 kb on + strand at 295.969 kb on + strand at 295.970 kb on - strand at 296.055 kb on + strand at 296.055 kb on + strand at 296.055 kb on + strand at 296.055 kb on + strand at 296.055 kb on + strand at 296.055 kb on + strand at 296.055 kb on + strand at 296.055 kb on + strand at 296.055 kb on + strand at 296.055 kb on + strand at 296.055 kb on + strand at 296.055 kb on + strand at 296.056 kb on - strand at 296.056 kb on - strand at 296.056 kb on - strand at 296.056 kb on - strand at 296.056 kb on - strand at 296.056 kb on - strand at 296.056 kb on - strand at 296.256 kb on + strand, within GFF264 at 296.256 kb on + strand, within GFF264 at 296.256 kb on + strand, within GFF264 at 296.256 kb on + strand, within GFF264 at 296.256 kb on + strand, within GFF264 at 296.256 kb on + strand, within GFF264 at 296.257 kb on - strand, within GFF264 at 296.257 kb on - strand, within GFF264 at 296.257 kb on - strand, within GFF264 at 296.257 kb on - strand, within GFF264 at 296.257 kb on - strand, within GFF264 at 296.257 kb on - strand, within GFF264 at 296.257 kb on - strand, within GFF264 at 296.257 kb on - strand, within GFF264 at 296.257 kb on - strand, within GFF264 at 296.257 kb on - strand, within GFF264 at 296.463 kb on + strand, within GFF264 at 296.463 kb on + strand, within GFF264 at 296.463 kb on + strand, within GFF264 at 296.463 kb on + strand, within GFF264 at 296.463 kb on + strand, within GFF264 at 296.463 kb on + strand, within GFF264 at 296.463 kb on + strand, within GFF264 at 296.463 kb on + strand, within GFF264 at 296.463 kb on + strand, within GFF264 at 296.463 kb on + strand, within GFF264 at 296.463 kb on + strand, within GFF264 at 296.464 kb on - strand, within GFF264 at 296.464 kb on - strand, within GFF264 at 296.464 kb on - strand, within GFF264 at 296.464 kb on - strand, within GFF264 at 296.464 kb on - strand, within GFF264 at 296.464 kb on - strand, within GFF264 at 296.577 kb on + strand, within GFF264 at 296.577 kb on + strand, within GFF264 at 296.577 kb on + strand, within GFF264 at 296.577 kb on + strand, within GFF264 at 296.577 kb on + strand, within GFF264 at 296.577 kb on + strand, within GFF264 at 296.577 kb on + strand, within GFF264 at 296.578 kb on - strand, within GFF264 at 296.578 kb on - strand, within GFF264 at 296.578 kb on - strand, within GFF264 at 296.601 kb on + strand, within GFF264 at 296.601 kb on + strand, within GFF264 at 296.601 kb on + strand, within GFF264 at 296.601 kb on + strand, within GFF264 at 296.601 kb on + strand, within GFF264 at 296.601 kb on + strand, within GFF264 at 296.601 kb on + strand, within GFF264 at 296.601 kb on + strand, within GFF264 at 296.601 kb on + strand, within GFF264 at 296.602 kb on - strand, within GFF264 at 296.602 kb on - strand, within GFF264 at 296.602 kb on - strand, within GFF264 at 296.602 kb on - strand, within GFF264 at 296.602 kb on - strand, within GFF264 at 296.602 kb on - strand, within GFF264 at 296.673 kb on + strand, within GFF264 at 296.674 kb on - strand, within GFF264 at 296.691 kb on + strand, within GFF264 at 296.691 kb on + strand, within GFF264 at 296.691 kb on + strand, within GFF264 at 296.692 kb on - strand, within GFF264 at 296.692 kb on - strand, within GFF264 at 296.692 kb on - strand, within GFF264 at 296.692 kb on - strand, within GFF264 at 297.123 kb on + strand, within GFF264 at 297.150 kb on + strand, within GFF264 at 297.150 kb on + strand, within GFF264 at 297.285 kb on + strand, within GFF264 at 297.465 kb on + strand, within GFF264 at 297.465 kb on + strand, within GFF264 at 297.465 kb on + strand, within GFF264 at 297.465 kb on + strand, within GFF264 at 297.465 kb on + strand, within GFF264 at 297.465 kb on + strand, within GFF264 at 297.465 kb on + strand, within GFF264 at 297.465 kb on + strand, within GFF264 at 297.466 kb on - strand, within GFF264 at 297.466 kb on - strand, within GFF264 at 297.466 kb on - strand, within GFF264 at 297.466 kb on - strand, within GFF264 at 297.466 kb on - strand, within GFF264 at 297.466 kb on - strand, within GFF264 at 297.540 kb on + strand at 297.540 kb on + strand at 297.540 kb on + strand at 297.541 kb on - strand at 297.741 kb on + strand at 297.741 kb on + strand at 297.741 kb on + strand at 297.741 kb on + strand at 297.741 kb on + strand at 297.742 kb on - strand at 297.742 kb on - strand at 297.742 kb on - strand at 297.742 kb on - strand at 297.742 kb on - strand at 297.742 kb on - strand at 297.742 kb on - strand at 297.758 kb on + strand at 297.759 kb on - strand at 298.306 kb on + strand, within GFF265 at 298.306 kb on + strand, within GFF265 at 298.306 kb on + strand, within GFF265 at 298.306 kb on + strand, within GFF265 at 298.306 kb on + strand, within GFF265 at 298.306 kb on + strand, within GFF265 at 298.306 kb on + strand, within GFF265 at 298.306 kb on + strand, within GFF265 at 298.306 kb on + strand, within GFF265 at 298.306 kb on + strand, within GFF265 at 298.307 kb on - strand, within GFF265 at 298.307 kb on - strand, within GFF265 at 298.357 kb on + strand, within GFF265 at 298.357 kb on + strand, within GFF265 at 298.357 kb on + strand, within GFF265 at 298.357 kb on + strand, within GFF265 at 298.357 kb on + strand, within GFF265 at 298.357 kb on + strand, within GFF265 at 298.358 kb on - strand, within GFF265 at 298.358 kb on - strand, within GFF265 at 298.358 kb on - strand, within GFF265 at 298.358 kb on - strand, within GFF265 at 298.358 kb on - strand, within GFF265 at 298.358 kb on - strand, within GFF265 at 298.627 kb on + strand, within GFF265 at 298.627 kb on + strand, within GFF265 at 298.627 kb on + strand, within GFF265 at 298.627 kb on + strand, within GFF265 at 298.627 kb on + strand, within GFF265 at 298.627 kb on + strand, within GFF265 at 298.627 kb on + strand, within GFF265 at 298.627 kb on + strand, within GFF265 at 298.627 kb on + strand, within GFF265 at 298.627 kb on + strand, within GFF265 at 298.628 kb on + strand, within GFF265 at 298.628 kb on - strand, within GFF265 at 298.628 kb on - strand, within GFF265 at 298.628 kb on - strand, within GFF265 at 298.628 kb on - strand, within GFF265 at 298.628 kb on - strand, within GFF265 at 298.628 kb on - strand, within GFF265 at 298.651 kb on + strand, within GFF265 at 298.651 kb on + strand, within GFF265 at 298.651 kb on + strand, within GFF265 at 298.651 kb on + strand, within GFF265 at 298.652 kb on - strand, within GFF265 at 298.652 kb on - strand, within GFF265 at 298.652 kb on - strand, within GFF265 at 298.652 kb on - strand, within GFF265
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 295,178 + +1.9 295,179 - -1.2 295,179 - -1.3 295,179 - -1.0 295,220 + -0.4 295,220 + +0.5 295,220 + +0.7 295,220 + +0.2 295,220 + +1.8 295,220 + -0.7 295,221 - -1.4 295,221 - -0.8 295,231 + -0.7 295,231 + -0.1 295,231 + -1.1 295,232 - -0.8 295,232 - -1.9 295,253 + -0.5 295,253 + -0.4 295,253 + -0.7 295,253 + -0.4 295,253 + +1.2 295,253 + -0.4 295,253 + -1.0 295,253 + -0.4 295,253 + +1.0 295,253 + -0.2 295,253 + -1.0 295,253 + -2.1 295,253 + +0.3 295,253 + +1.9 295,253 + -0.1 295,254 - -0.9 295,254 - +0.1 295,254 - -0.1 295,254 - -0.5 295,254 - +1.3 295,254 - -0.4 295,254 - -0.9 295,254 - +0.2 295,254 - -0.3 295,254 - +1.2 295,254 - +0.0 295,304 + -1.7 295,484 + GFF263 0.41 +2.3 295,484 + GFF263 0.41 -0.2 295,484 + GFF263 0.41 -0.0 295,484 + GFF263 0.41 +0.5 295,484 + GFF263 0.41 -0.2 295,484 + GFF263 0.41 -0.6 295,484 + GFF263 0.41 -0.6 295,485 - GFF263 0.42 +1.2 295,485 - GFF263 0.42 -0.9 295,485 - GFF263 0.42 +0.3 295,485 - GFF263 0.42 -0.1 295,485 - GFF263 0.42 -0.0 295,485 - GFF263 0.42 -1.0 295,485 - GFF263 0.42 -0.1 295,485 - GFF263 0.42 +2.5 295,485 - GFF263 0.42 -0.7 295,485 - GFF263 0.42 -0.8 295,485 - GFF263 0.42 -0.2 295,485 - GFF263 0.42 +1.1 295,485 - GFF263 0.42 +0.1 295,485 - GFF263 0.42 -0.8 295,692 - GFF263 0.78 +0.3 295,870 + +0.9 295,871 - -0.9 295,871 - +0.5 295,871 - -0.2 295,966 + +0.9 295,966 + +0.3 295,966 + -0.7 295,966 + +1.5 295,966 + +1.1 295,966 + -0.1 295,967 - -0.5 295,967 - -0.6 295,967 - +0.0 295,967 - -0.5 295,967 - +1.5 295,967 - +0.3 295,967 - -1.2 295,967 - +0.6 295,967 - -0.3 295,969 + -0.5 295,969 + +0.1 295,969 + +0.6 295,969 + -1.9 295,969 + -0.5 295,970 - -2.2 296,055 + +0.1 296,055 + +0.1 296,055 + -0.5 296,055 + +0.8 296,055 + -1.1 296,055 + -1.4 296,055 + +0.9 296,055 + +0.6 296,055 + -0.2 296,055 + -0.7 296,055 + -0.3 296,055 + -0.4 296,056 - +0.8 296,056 - +0.1 296,056 - +0.3 296,056 - -0.7 296,056 - +0.1 296,056 - -0.9 296,056 - +0.2 296,256 + GFF264 0.12 -1.0 296,256 + GFF264 0.12 +0.1 296,256 + GFF264 0.12 +0.0 296,256 + GFF264 0.12 -0.1 296,256 + GFF264 0.12 +0.3 296,256 + GFF264 0.12 +0.2 296,257 - GFF264 0.12 +0.3 296,257 - GFF264 0.12 -0.9 296,257 - GFF264 0.12 +0.1 296,257 - GFF264 0.12 -1.9 296,257 - GFF264 0.12 +0.6 296,257 - GFF264 0.12 -0.1 296,257 - GFF264 0.12 -0.3 296,257 - GFF264 0.12 -0.3 296,257 - GFF264 0.12 +0.7 296,257 - GFF264 0.12 -0.4 296,463 + GFF264 0.24 -0.4 296,463 + GFF264 0.24 -0.4 296,463 + GFF264 0.24 +0.6 296,463 + GFF264 0.24 +0.2 296,463 + GFF264 0.24 -0.2 296,463 + GFF264 0.24 +1.2 296,463 + GFF264 0.24 +0.1 296,463 + GFF264 0.24 +0.2 296,463 + GFF264 0.24 +1.5 296,463 + GFF264 0.24 +0.3 296,463 + GFF264 0.24 +0.9 296,464 - GFF264 0.24 +0.8 296,464 - GFF264 0.24 -0.9 296,464 - GFF264 0.24 -0.1 296,464 - GFF264 0.24 -0.3 296,464 - GFF264 0.24 +0.1 296,464 - GFF264 0.24 +0.3 296,577 + GFF264 0.31 -0.2 296,577 + GFF264 0.31 -1.1 296,577 + GFF264 0.31 +1.9 296,577 + GFF264 0.31 -0.7 296,577 + GFF264 0.31 -0.3 296,577 + GFF264 0.31 -0.1 296,577 + GFF264 0.31 +0.5 296,578 - GFF264 0.32 -2.7 296,578 - GFF264 0.32 -0.7 296,578 - GFF264 0.32 -1.3 296,601 + GFF264 0.33 -0.5 296,601 + GFF264 0.33 +0.9 296,601 + GFF264 0.33 -0.4 296,601 + GFF264 0.33 +0.0 296,601 + GFF264 0.33 +0.5 296,601 + GFF264 0.33 -0.1 296,601 + GFF264 0.33 +1.0 296,601 + GFF264 0.33 -0.3 296,601 + GFF264 0.33 -0.2 296,602 - GFF264 0.33 -0.5 296,602 - GFF264 0.33 -0.6 296,602 - GFF264 0.33 +4.6 296,602 - GFF264 0.33 +0.0 296,602 - GFF264 0.33 +1.9 296,602 - GFF264 0.33 -0.5 296,673 + GFF264 0.37 +0.1 296,674 - GFF264 0.37 -0.1 296,691 + GFF264 0.39 -0.2 296,691 + GFF264 0.39 -0.1 296,691 + GFF264 0.39 -0.7 296,692 - GFF264 0.39 -1.2 296,692 - GFF264 0.39 -0.3 296,692 - GFF264 0.39 -0.2 296,692 - GFF264 0.39 -0.1 297,123 + GFF264 0.65 +0.2 297,150 + GFF264 0.67 +0.8 297,150 + GFF264 0.67 -0.7 297,285 + GFF264 0.75 +0.3 297,465 + GFF264 0.87 -2.4 297,465 + GFF264 0.87 +2.3 297,465 + GFF264 0.87 -1.1 297,465 + GFF264 0.87 -1.5 297,465 + GFF264 0.87 +0.3 297,465 + GFF264 0.87 +1.9 297,465 + GFF264 0.87 -0.4 297,465 + GFF264 0.87 +0.2 297,466 - GFF264 0.87 +0.9 297,466 - GFF264 0.87 +0.3 297,466 - GFF264 0.87 -1.7 297,466 - GFF264 0.87 -0.3 297,466 - GFF264 0.87 +0.6 297,466 - GFF264 0.87 -0.5 297,540 + -0.7 297,540 + +0.2 297,540 + -0.1 297,541 - +0.3 297,741 + +1.9 297,741 + +1.3 297,741 + +0.2 297,741 + -1.4 297,741 + -1.2 297,742 - -0.9 297,742 - -0.3 297,742 - +1.4 297,742 - +0.4 297,742 - -1.5 297,742 - +1.1 297,742 - -0.7 297,758 + +0.6 297,759 - -1.2 298,306 + GFF265 0.45 +0.8 298,306 + GFF265 0.45 -1.1 298,306 + GFF265 0.45 -0.5 298,306 + GFF265 0.45 -1.0 298,306 + GFF265 0.45 +1.2 298,306 + GFF265 0.45 -0.1 298,306 + GFF265 0.45 -0.4 298,306 + GFF265 0.45 +0.2 298,306 + GFF265 0.45 -0.4 298,306 + GFF265 0.45 -0.2 298,307 - GFF265 0.45 -0.4 298,307 - GFF265 0.45 -0.3 298,357 + GFF265 0.49 -1.1 298,357 + GFF265 0.49 -0.4 298,357 + GFF265 0.49 -0.3 298,357 + GFF265 0.49 -0.2 298,357 + GFF265 0.49 -0.4 298,357 + GFF265 0.49 -0.1 298,358 - GFF265 0.50 -0.1 298,358 - GFF265 0.50 -1.8 298,358 - GFF265 0.50 -1.1 298,358 - GFF265 0.50 +1.9 298,358 - GFF265 0.50 -0.7 298,358 - GFF265 0.50 +0.6 298,627 + GFF265 0.73 +0.4 298,627 + GFF265 0.73 +0.2 298,627 + GFF265 0.73 -0.7 298,627 + GFF265 0.73 +0.1 298,627 + GFF265 0.73 +0.6 298,627 + GFF265 0.73 +0.7 298,627 + GFF265 0.73 +0.5 298,627 + GFF265 0.73 +0.2 298,627 + GFF265 0.73 -0.0 298,627 + GFF265 0.73 -0.7 298,628 + GFF265 0.73 -0.4 298,628 - GFF265 0.73 +1.0 298,628 - GFF265 0.73 -0.5 298,628 - GFF265 0.73 +0.4 298,628 - GFF265 0.73 -1.4 298,628 - GFF265 0.73 -0.1 298,628 - GFF265 0.73 -0.8 298,651 + GFF265 0.75 -0.4 298,651 + GFF265 0.75 +0.2 298,651 + GFF265 0.75 +0.9 298,651 + GFF265 0.75 +0.4 298,652 - GFF265 0.75 +0.3 298,652 - GFF265 0.75 -1.2 298,652 - GFF265 0.75 -1.0 298,652 - GFF265 0.75 -1.0
Or see this region's nucleotide sequence