Strain Fitness in Variovorax sp. SCN45 around GFF2634

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2633 and GFF2634 are separated by 70 nucleotidesGFF2634 and GFF2635 are separated by 12 nucleotides GFF2633 - Proline iminopeptidase (EC 3.4.11.5), at 44,537 to 45,490 GFF2633 GFF2634 - FIG00464095: hypothetical protein, at 45,561 to 45,983 GFF2634 GFF2635 - hypothetical protein, at 45,996 to 48,956 GFF2635 Position (kb) 45 46Strain fitness (log2 ratio) -2 -1 0 1 2at 44.576 kb on + strandat 44.576 kb on + strandat 44.576 kb on + strandat 44.577 kb on - strandat 44.621 kb on + strandat 44.622 kb on - strandat 44.702 kb on - strand, within GFF2633at 44.702 kb on - strand, within GFF2633at 44.702 kb on - strand, within GFF2633at 44.702 kb on - strand, within GFF2633at 44.702 kb on - strand, within GFF2633at 44.726 kb on + strand, within GFF2633at 44.951 kb on + strand, within GFF2633at 44.951 kb on + strand, within GFF2633at 44.951 kb on + strand, within GFF2633at 44.951 kb on + strand, within GFF2633at 44.952 kb on - strand, within GFF2633at 44.952 kb on - strand, within GFF2633at 44.981 kb on + strand, within GFF2633at 44.981 kb on + strand, within GFF2633at 44.982 kb on - strand, within GFF2633at 44.982 kb on - strand, within GFF2633at 44.982 kb on - strand, within GFF2633at 44.984 kb on + strand, within GFF2633at 44.985 kb on - strand, within GFF2633at 44.985 kb on - strand, within GFF2633at 44.985 kb on - strand, within GFF2633at 44.985 kb on - strand, within GFF2633at 45.082 kb on + strand, within GFF2633at 45.082 kb on + strand, within GFF2633at 45.082 kb on + strand, within GFF2633at 45.242 kb on + strand, within GFF2633at 45.242 kb on + strand, within GFF2633at 45.243 kb on - strand, within GFF2633at 45.243 kb on - strand, within GFF2633at 45.243 kb on - strand, within GFF2633at 45.243 kb on - strand, within GFF2633at 45.243 kb on - strand, within GFF2633at 45.335 kb on + strand, within GFF2633at 45.428 kb on + strandat 45.428 kb on + strandat 45.429 kb on - strandat 45.429 kb on - strandat 45.514 kb on - strandat 45.514 kb on - strandat 45.514 kb on - strandat 45.649 kb on - strand, within GFF2634at 45.801 kb on + strand, within GFF2634at 45.801 kb on + strand, within GFF2634at 45.801 kb on + strand, within GFF2634at 45.801 kb on + strand, within GFF2634at 45.801 kb on + strand, within GFF2634at 45.801 kb on + strand, within GFF2634at 45.802 kb on - strand, within GFF2634at 45.802 kb on - strand, within GFF2634at 45.802 kb on - strand, within GFF2634at 45.802 kb on - strand, within GFF2634at 45.868 kb on + strand, within GFF2634at 45.879 kb on + strand, within GFF2634at 45.880 kb on - strand, within GFF2634at 45.880 kb on - strand, within GFF2634at 45.897 kb on + strand, within GFF2634at 45.897 kb on + strand, within GFF2634at 45.897 kb on + strand, within GFF2634at 45.897 kb on + strand, within GFF2634at 45.897 kb on + strand, within GFF2634at 45.897 kb on + strand, within GFF2634at 45.897 kb on + strand, within GFF2634at 45.898 kb on - strand, within GFF2634at 45.898 kb on - strand, within GFF2634at 45.898 kb on - strand, within GFF2634at 45.898 kb on - strand, within GFF2634at 45.981 kb on + strandat 45.981 kb on + strandat 45.981 kb on + strandat 45.981 kb on + strandat 45.981 kb on + strandat 45.982 kb on - strandat 46.432 kb on + strand, within GFF2635at 46.433 kb on - strand, within GFF2635at 46.457 kb on + strand, within GFF2635at 46.458 kb on - strand, within GFF2635at 46.763 kb on - strand, within GFF2635at 46.844 kb on - strand, within GFF2635at 46.844 kb on - strand, within GFF2635

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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44,576 + -0.1
44,576 + -0.2
44,576 + -0.0
44,577 - +0.3
44,621 + -0.4
44,622 - +1.5
44,702 - GFF2633 0.17 -0.4
44,702 - GFF2633 0.17 +0.0
44,702 - GFF2633 0.17 +0.7
44,702 - GFF2633 0.17 +0.3
44,702 - GFF2633 0.17 +0.7
44,726 + GFF2633 0.20 +0.3
44,951 + GFF2633 0.43 +0.2
44,951 + GFF2633 0.43 +2.2
44,951 + GFF2633 0.43 +0.1
44,951 + GFF2633 0.43 -0.3
44,952 - GFF2633 0.44 -0.8
44,952 - GFF2633 0.44 +1.9
44,981 + GFF2633 0.47 +0.2
44,981 + GFF2633 0.47 +1.4
44,982 - GFF2633 0.47 -0.2
44,982 - GFF2633 0.47 -0.7
44,982 - GFF2633 0.47 -1.1
44,984 + GFF2633 0.47 +1.3
44,985 - GFF2633 0.47 -0.7
44,985 - GFF2633 0.47 +0.1
44,985 - GFF2633 0.47 -0.4
44,985 - GFF2633 0.47 -1.0
45,082 + GFF2633 0.57 +0.0
45,082 + GFF2633 0.57 +1.1
45,082 + GFF2633 0.57 +1.5
45,242 + GFF2633 0.74 +1.3
45,242 + GFF2633 0.74 -2.0
45,243 - GFF2633 0.74 -0.0
45,243 - GFF2633 0.74 +0.5
45,243 - GFF2633 0.74 +0.6
45,243 - GFF2633 0.74 -0.4
45,243 - GFF2633 0.74 +0.5
45,335 + GFF2633 0.84 -0.0
45,428 + +0.9
45,428 + -0.4
45,429 - +0.7
45,429 - -0.5
45,514 - +0.6
45,514 - +0.2
45,514 - +0.1
45,649 - GFF2634 0.21 -0.7
45,801 + GFF2634 0.57 -0.5
45,801 + GFF2634 0.57 +0.3
45,801 + GFF2634 0.57 +0.3
45,801 + GFF2634 0.57 -0.1
45,801 + GFF2634 0.57 +0.1
45,801 + GFF2634 0.57 +0.3
45,802 - GFF2634 0.57 +1.5
45,802 - GFF2634 0.57 +0.1
45,802 - GFF2634 0.57 +0.1
45,802 - GFF2634 0.57 -0.4
45,868 + GFF2634 0.73 +1.2
45,879 + GFF2634 0.75 +0.3
45,880 - GFF2634 0.75 +0.1
45,880 - GFF2634 0.75 -0.0
45,897 + GFF2634 0.79 +1.2
45,897 + GFF2634 0.79 +0.3
45,897 + GFF2634 0.79 -0.4
45,897 + GFF2634 0.79 +0.5
45,897 + GFF2634 0.79 -0.6
45,897 + GFF2634 0.79 +2.3
45,897 + GFF2634 0.79 -0.7
45,898 - GFF2634 0.80 -1.9
45,898 - GFF2634 0.80 -0.4
45,898 - GFF2634 0.80 -0.3
45,898 - GFF2634 0.80 -0.7
45,981 + -0.7
45,981 + +0.1
45,981 + -0.0
45,981 + +0.7
45,981 + +0.3
45,982 - +0.4
46,432 + GFF2635 0.15 -0.4
46,433 - GFF2635 0.15 +1.1
46,457 + GFF2635 0.16 +1.3
46,458 - GFF2635 0.16 +0.9
46,763 - GFF2635 0.26 +0.5
46,844 - GFF2635 0.29 +0.1
46,844 - GFF2635 0.29 -0.8

Or see this region's nucleotide sequence