Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2623 and GFF2624 are separated by 144 nucleotides GFF2624 and GFF2625 are separated by 156 nucleotides
GFF2623 - Aspartate aminotransferase, at 33,673 to 35,292
GFF2623
GFF2624 - hypothetical protein, at 35,437 to 36,795
GFF2624
GFF2625 - hypothetical protein, at 36,952 to 39,132
GFF2625
Position (kb) 35
36
37 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 34.471 kb on + strand, within GFF2623 at 34.471 kb on + strand, within GFF2623 at 34.472 kb on - strand, within GFF2623 at 34.472 kb on - strand, within GFF2623 at 34.472 kb on - strand, within GFF2623 at 34.472 kb on - strand, within GFF2623 at 34.528 kb on + strand, within GFF2623 at 34.528 kb on + strand, within GFF2623 at 34.529 kb on - strand, within GFF2623 at 34.529 kb on - strand, within GFF2623 at 34.594 kb on + strand, within GFF2623 at 34.594 kb on + strand, within GFF2623 at 34.594 kb on + strand, within GFF2623 at 34.594 kb on + strand, within GFF2623 at 34.595 kb on - strand, within GFF2623 at 34.885 kb on + strand, within GFF2623 at 34.885 kb on + strand, within GFF2623 at 34.886 kb on - strand, within GFF2623 at 34.886 kb on - strand, within GFF2623 at 34.886 kb on - strand, within GFF2623 at 34.886 kb on - strand, within GFF2623 at 34.886 kb on - strand, within GFF2623 at 34.886 kb on - strand, within GFF2623 at 34.886 kb on - strand, within GFF2623 at 34.886 kb on - strand, within GFF2623 at 34.933 kb on + strand, within GFF2623 at 34.934 kb on - strand, within GFF2623 at 34.934 kb on - strand, within GFF2623 at 34.981 kb on + strand, within GFF2623 at 34.981 kb on + strand, within GFF2623 at 34.981 kb on + strand, within GFF2623 at 34.981 kb on + strand, within GFF2623 at 34.981 kb on + strand, within GFF2623 at 34.981 kb on + strand, within GFF2623 at 34.981 kb on + strand, within GFF2623 at 34.981 kb on + strand, within GFF2623 at 34.981 kb on + strand, within GFF2623 at 34.981 kb on + strand, within GFF2623 at 34.982 kb on - strand, within GFF2623 at 34.982 kb on - strand, within GFF2623 at 34.982 kb on - strand, within GFF2623 at 34.984 kb on + strand, within GFF2623 at 34.984 kb on + strand, within GFF2623 at 34.984 kb on + strand, within GFF2623 at 34.984 kb on + strand, within GFF2623 at 34.984 kb on + strand, within GFF2623 at 34.985 kb on - strand, within GFF2623 at 34.985 kb on - strand, within GFF2623 at 34.985 kb on - strand, within GFF2623 at 34.985 kb on - strand, within GFF2623 at 34.985 kb on - strand, within GFF2623 at 34.985 kb on - strand, within GFF2623 at 34.985 kb on - strand, within GFF2623 at 35.179 kb on + strand at 35.185 kb on + strand at 35.186 kb on - strand at 35.186 kb on - strand at 35.227 kb on + strand at 35.228 kb on - strand at 35.228 kb on - strand at 35.290 kb on + strand at 35.290 kb on + strand at 35.291 kb on - strand at 35.349 kb on + strand at 35.378 kb on + strand at 35.414 kb on + strand at 35.414 kb on + strand at 35.414 kb on + strand at 35.415 kb on - strand at 35.421 kb on - strand at 35.421 kb on - strand at 35.421 kb on - strand at 35.446 kb on + strand at 35.446 kb on + strand at 35.614 kb on + strand, within GFF2624 at 35.655 kb on + strand, within GFF2624 at 35.656 kb on - strand, within GFF2624 at 35.866 kb on + strand, within GFF2624 at 35.866 kb on + strand, within GFF2624 at 35.867 kb on - strand, within GFF2624 at 35.867 kb on - strand, within GFF2624 at 35.867 kb on - strand, within GFF2624 at 35.867 kb on - strand, within GFF2624 at 35.929 kb on + strand, within GFF2624 at 35.929 kb on + strand, within GFF2624 at 35.929 kb on + strand, within GFF2624 at 35.929 kb on + strand, within GFF2624 at 35.929 kb on + strand, within GFF2624 at 35.929 kb on + strand, within GFF2624 at 35.930 kb on - strand, within GFF2624 at 35.930 kb on - strand, within GFF2624 at 35.930 kb on - strand, within GFF2624 at 35.930 kb on - strand, within GFF2624 at 36.001 kb on + strand, within GFF2624 at 36.001 kb on + strand, within GFF2624 at 36.001 kb on + strand, within GFF2624 at 36.001 kb on + strand, within GFF2624 at 36.001 kb on + strand, within GFF2624 at 36.001 kb on + strand, within GFF2624 at 36.001 kb on + strand, within GFF2624 at 36.001 kb on + strand, within GFF2624 at 36.001 kb on + strand, within GFF2624 at 36.001 kb on + strand, within GFF2624 at 36.001 kb on + strand, within GFF2624 at 36.001 kb on + strand, within GFF2624 at 36.001 kb on + strand, within GFF2624 at 36.002 kb on - strand, within GFF2624 at 36.002 kb on - strand, within GFF2624 at 36.002 kb on - strand, within GFF2624 at 36.002 kb on - strand, within GFF2624 at 36.002 kb on - strand, within GFF2624 at 36.002 kb on - strand, within GFF2624 at 36.002 kb on - strand, within GFF2624 at 36.002 kb on - strand, within GFF2624 at 36.002 kb on - strand, within GFF2624 at 36.104 kb on + strand, within GFF2624 at 36.104 kb on + strand, within GFF2624 at 36.104 kb on + strand, within GFF2624 at 36.115 kb on + strand, within GFF2624 at 36.115 kb on + strand, within GFF2624 at 36.115 kb on + strand, within GFF2624 at 36.116 kb on - strand, within GFF2624 at 36.116 kb on - strand, within GFF2624 at 36.116 kb on - strand, within GFF2624 at 36.181 kb on + strand, within GFF2624 at 36.181 kb on + strand, within GFF2624 at 36.181 kb on + strand, within GFF2624 at 36.182 kb on - strand, within GFF2624 at 36.182 kb on - strand, within GFF2624 at 36.182 kb on - strand, within GFF2624 at 36.230 kb on + strand, within GFF2624 at 36.230 kb on + strand, within GFF2624 at 36.231 kb on - strand, within GFF2624 at 36.231 kb on - strand, within GFF2624 at 36.268 kb on + strand, within GFF2624 at 36.268 kb on + strand, within GFF2624 at 36.268 kb on + strand, within GFF2624 at 36.269 kb on - strand, within GFF2624 at 36.269 kb on - strand, within GFF2624 at 36.269 kb on - strand, within GFF2624 at 36.269 kb on - strand, within GFF2624 at 36.284 kb on + strand, within GFF2624 at 36.284 kb on + strand, within GFF2624 at 36.284 kb on + strand, within GFF2624 at 36.285 kb on - strand, within GFF2624 at 36.285 kb on - strand, within GFF2624 at 36.331 kb on + strand, within GFF2624 at 36.331 kb on + strand, within GFF2624 at 36.332 kb on - strand, within GFF2624 at 36.332 kb on - strand, within GFF2624 at 36.409 kb on + strand, within GFF2624 at 36.409 kb on + strand, within GFF2624 at 36.409 kb on + strand, within GFF2624 at 36.409 kb on + strand, within GFF2624 at 36.409 kb on + strand, within GFF2624 at 36.409 kb on + strand, within GFF2624 at 36.409 kb on + strand, within GFF2624 at 36.409 kb on + strand, within GFF2624 at 36.409 kb on + strand, within GFF2624 at 36.409 kb on + strand, within GFF2624 at 36.409 kb on + strand, within GFF2624 at 36.409 kb on + strand, within GFF2624 at 36.409 kb on + strand, within GFF2624 at 36.409 kb on + strand, within GFF2624 at 36.410 kb on - strand, within GFF2624 at 36.410 kb on - strand, within GFF2624 at 36.410 kb on - strand, within GFF2624 at 36.417 kb on + strand, within GFF2624 at 36.418 kb on - strand, within GFF2624 at 36.418 kb on - strand, within GFF2624 at 36.439 kb on + strand, within GFF2624 at 36.439 kb on + strand, within GFF2624 at 36.439 kb on + strand, within GFF2624 at 36.439 kb on + strand, within GFF2624 at 36.440 kb on - strand, within GFF2624 at 36.440 kb on - strand, within GFF2624 at 36.440 kb on - strand, within GFF2624 at 36.440 kb on - strand, within GFF2624 at 36.482 kb on + strand, within GFF2624 at 36.512 kb on + strand, within GFF2624 at 36.586 kb on + strand, within GFF2624 at 36.587 kb on - strand, within GFF2624 at 36.587 kb on - strand, within GFF2624 at 36.587 kb on - strand, within GFF2624 at 36.703 kb on + strand at 36.703 kb on + strand at 36.703 kb on + strand at 36.704 kb on - strand at 36.704 kb on - strand at 36.704 kb on - strand at 36.769 kb on + strand at 36.770 kb on - strand at 36.771 kb on + strand at 36.870 kb on + strand at 36.871 kb on - strand at 36.886 kb on + strand at 36.886 kb on + strand at 36.886 kb on + strand at 36.886 kb on + strand at 36.886 kb on + strand at 36.886 kb on + strand at 36.887 kb on - strand at 36.887 kb on - strand at 36.887 kb on - strand at 36.887 kb on - strand at 36.887 kb on - strand at 36.887 kb on - strand at 36.990 kb on + strand at 36.990 kb on + strand at 36.990 kb on + strand at 36.991 kb on - strand at 37.154 kb on + strand at 37.154 kb on + strand at 37.154 kb on + strand at 37.154 kb on + strand at 37.154 kb on + strand at 37.154 kb on + strand at 37.154 kb on + strand at 37.154 kb on + strand at 37.154 kb on + strand at 37.154 kb on + strand at 37.154 kb on + strand at 37.154 kb on + strand at 37.154 kb on + strand at 37.154 kb on + strand at 37.154 kb on + strand at 37.154 kb on + strand at 37.154 kb on + strand at 37.155 kb on - strand at 37.155 kb on - strand at 37.155 kb on - strand at 37.155 kb on - strand at 37.155 kb on - strand at 37.155 kb on - strand at 37.155 kb on - strand at 37.155 kb on - strand at 37.155 kb on - strand at 37.155 kb on - strand at 37.155 kb on - strand at 37.155 kb on - strand at 37.220 kb on - strand, within GFF2625 at 37.340 kb on + strand, within GFF2625 at 37.445 kb on + strand, within GFF2625 at 37.499 kb on + strand, within GFF2625 at 37.499 kb on + strand, within GFF2625 at 37.500 kb on - strand, within GFF2625 at 37.500 kb on - strand, within GFF2625 at 37.565 kb on + strand, within GFF2625 at 37.565 kb on + strand, within GFF2625 at 37.566 kb on - strand, within GFF2625 at 37.612 kb on + strand, within GFF2625 at 37.641 kb on - strand, within GFF2625 at 37.751 kb on + strand, within GFF2625
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 34,471 + GFF2623 0.49 +0.9 34,471 + GFF2623 0.49 -1.0 34,472 - GFF2623 0.49 +0.1 34,472 - GFF2623 0.49 -0.7 34,472 - GFF2623 0.49 -0.2 34,472 - GFF2623 0.49 +1.9 34,528 + GFF2623 0.53 +0.8 34,528 + GFF2623 0.53 -0.2 34,529 - GFF2623 0.53 +0.4 34,529 - GFF2623 0.53 +0.2 34,594 + GFF2623 0.57 +1.9 34,594 + GFF2623 0.57 -0.2 34,594 + GFF2623 0.57 +0.9 34,594 + GFF2623 0.57 +0.3 34,595 - GFF2623 0.57 +1.2 34,885 + GFF2623 0.75 -0.4 34,885 + GFF2623 0.75 +1.9 34,886 - GFF2623 0.75 -0.4 34,886 - GFF2623 0.75 -0.1 34,886 - GFF2623 0.75 -0.3 34,886 - GFF2623 0.75 -0.6 34,886 - GFF2623 0.75 +0.0 34,886 - GFF2623 0.75 +0.5 34,886 - GFF2623 0.75 -2.1 34,886 - GFF2623 0.75 -0.6 34,933 + GFF2623 0.78 -0.4 34,934 - GFF2623 0.78 -0.3 34,934 - GFF2623 0.78 -0.7 34,981 + GFF2623 0.81 +1.1 34,981 + GFF2623 0.81 +0.4 34,981 + GFF2623 0.81 +0.4 34,981 + GFF2623 0.81 -0.9 34,981 + GFF2623 0.81 -1.0 34,981 + GFF2623 0.81 +0.9 34,981 + GFF2623 0.81 +0.2 34,981 + GFF2623 0.81 -0.9 34,981 + GFF2623 0.81 +0.6 34,981 + GFF2623 0.81 +0.3 34,982 - GFF2623 0.81 +0.1 34,982 - GFF2623 0.81 -0.4 34,982 - GFF2623 0.81 -0.1 34,984 + GFF2623 0.81 +0.1 34,984 + GFF2623 0.81 -0.3 34,984 + GFF2623 0.81 -0.3 34,984 + GFF2623 0.81 +0.9 34,984 + GFF2623 0.81 +1.3 34,985 - GFF2623 0.81 +0.7 34,985 - GFF2623 0.81 -0.8 34,985 - GFF2623 0.81 -0.3 34,985 - GFF2623 0.81 -0.8 34,985 - GFF2623 0.81 -0.7 34,985 - GFF2623 0.81 +0.7 34,985 - GFF2623 0.81 +0.4 35,179 + -0.9 35,185 + -0.6 35,186 - +1.1 35,186 - +0.3 35,227 + +0.6 35,228 - +1.0 35,228 - +0.0 35,290 + -0.7 35,290 + -0.3 35,291 - -0.5 35,349 + -0.4 35,378 + +0.2 35,414 + -0.1 35,414 + -0.1 35,414 + +1.7 35,415 - +0.5 35,421 - -0.4 35,421 - +0.1 35,421 - +0.8 35,446 + -1.1 35,446 + +0.0 35,614 + GFF2624 0.13 -0.1 35,655 + GFF2624 0.16 -0.4 35,656 - GFF2624 0.16 -0.6 35,866 + GFF2624 0.32 -0.7 35,866 + GFF2624 0.32 +0.6 35,867 - GFF2624 0.32 +0.5 35,867 - GFF2624 0.32 -0.0 35,867 - GFF2624 0.32 -0.3 35,867 - GFF2624 0.32 -0.1 35,929 + GFF2624 0.36 +0.2 35,929 + GFF2624 0.36 +0.9 35,929 + GFF2624 0.36 +0.7 35,929 + GFF2624 0.36 +1.2 35,929 + GFF2624 0.36 +0.6 35,929 + GFF2624 0.36 -1.4 35,930 - GFF2624 0.36 +0.4 35,930 - GFF2624 0.36 +0.9 35,930 - GFF2624 0.36 -3.1 35,930 - GFF2624 0.36 +0.1 36,001 + GFF2624 0.42 -0.0 36,001 + GFF2624 0.42 +0.3 36,001 + GFF2624 0.42 +0.1 36,001 + GFF2624 0.42 -0.9 36,001 + GFF2624 0.42 +0.6 36,001 + GFF2624 0.42 +0.9 36,001 + GFF2624 0.42 +1.9 36,001 + GFF2624 0.42 -0.0 36,001 + GFF2624 0.42 +0.8 36,001 + GFF2624 0.42 +1.0 36,001 + GFF2624 0.42 +0.2 36,001 + GFF2624 0.42 +0.5 36,001 + GFF2624 0.42 +0.9 36,002 - GFF2624 0.42 +0.9 36,002 - GFF2624 0.42 -0.8 36,002 - GFF2624 0.42 -0.9 36,002 - GFF2624 0.42 -0.1 36,002 - GFF2624 0.42 +0.4 36,002 - GFF2624 0.42 -0.0 36,002 - GFF2624 0.42 -0.2 36,002 - GFF2624 0.42 -0.1 36,002 - GFF2624 0.42 +1.3 36,104 + GFF2624 0.49 +1.0 36,104 + GFF2624 0.49 -0.9 36,104 + GFF2624 0.49 +0.7 36,115 + GFF2624 0.50 +0.2 36,115 + GFF2624 0.50 +0.6 36,115 + GFF2624 0.50 -1.0 36,116 - GFF2624 0.50 +0.1 36,116 - GFF2624 0.50 +0.7 36,116 - GFF2624 0.50 +0.7 36,181 + GFF2624 0.55 +1.3 36,181 + GFF2624 0.55 -0.1 36,181 + GFF2624 0.55 +0.6 36,182 - GFF2624 0.55 -0.2 36,182 - GFF2624 0.55 -0.0 36,182 - GFF2624 0.55 -0.5 36,230 + GFF2624 0.58 +0.3 36,230 + GFF2624 0.58 -1.0 36,231 - GFF2624 0.58 +0.5 36,231 - GFF2624 0.58 +0.8 36,268 + GFF2624 0.61 -1.3 36,268 + GFF2624 0.61 +1.4 36,268 + GFF2624 0.61 +0.6 36,269 - GFF2624 0.61 -0.8 36,269 - GFF2624 0.61 -0.4 36,269 - GFF2624 0.61 +0.5 36,269 - GFF2624 0.61 +0.0 36,284 + GFF2624 0.62 +0.3 36,284 + GFF2624 0.62 -0.0 36,284 + GFF2624 0.62 +0.5 36,285 - GFF2624 0.62 +0.4 36,285 - GFF2624 0.62 -0.1 36,331 + GFF2624 0.66 +0.8 36,331 + GFF2624 0.66 +0.5 36,332 - GFF2624 0.66 +0.4 36,332 - GFF2624 0.66 -0.1 36,409 + GFF2624 0.72 -0.8 36,409 + GFF2624 0.72 +0.4 36,409 + GFF2624 0.72 -2.4 36,409 + GFF2624 0.72 +0.2 36,409 + GFF2624 0.72 +0.5 36,409 + GFF2624 0.72 +0.6 36,409 + GFF2624 0.72 +0.4 36,409 + GFF2624 0.72 +1.5 36,409 + GFF2624 0.72 -0.9 36,409 + GFF2624 0.72 +0.0 36,409 + GFF2624 0.72 -0.8 36,409 + GFF2624 0.72 +0.6 36,409 + GFF2624 0.72 +0.4 36,409 + GFF2624 0.72 +0.4 36,410 - GFF2624 0.72 -0.6 36,410 - GFF2624 0.72 +0.2 36,410 - GFF2624 0.72 -1.4 36,417 + GFF2624 0.72 -0.5 36,418 - GFF2624 0.72 +0.8 36,418 - GFF2624 0.72 -0.4 36,439 + GFF2624 0.74 +0.4 36,439 + GFF2624 0.74 +0.2 36,439 + GFF2624 0.74 -0.1 36,439 + GFF2624 0.74 +0.5 36,440 - GFF2624 0.74 +1.4 36,440 - GFF2624 0.74 -0.5 36,440 - GFF2624 0.74 -0.2 36,440 - GFF2624 0.74 -0.4 36,482 + GFF2624 0.77 -0.1 36,512 + GFF2624 0.79 -0.4 36,586 + GFF2624 0.85 +0.3 36,587 - GFF2624 0.85 +0.4 36,587 - GFF2624 0.85 +0.2 36,587 - GFF2624 0.85 +0.3 36,703 + -0.7 36,703 + -0.7 36,703 + +0.0 36,704 - +0.0 36,704 - +1.9 36,704 - +0.7 36,769 + -0.3 36,770 - -0.4 36,771 + +0.0 36,870 + +1.2 36,871 - -0.7 36,886 + -0.5 36,886 + +0.1 36,886 + -1.2 36,886 + +0.9 36,886 + +0.9 36,886 + +1.4 36,887 - +0.3 36,887 - +0.1 36,887 - -0.3 36,887 - -0.5 36,887 - -0.1 36,887 - -0.0 36,990 + +0.1 36,990 + +0.4 36,990 + -1.2 36,991 - +0.5 37,154 + -0.7 37,154 + +0.7 37,154 + -0.4 37,154 + +0.8 37,154 + -0.2 37,154 + +0.1 37,154 + -0.4 37,154 + +0.1 37,154 + -0.1 37,154 + -0.4 37,154 + +0.5 37,154 + -0.7 37,154 + -0.0 37,154 + +1.2 37,154 + -0.6 37,154 + -0.8 37,154 + +0.1 37,155 - -0.8 37,155 - +0.1 37,155 - +1.9 37,155 - -0.8 37,155 - +1.3 37,155 - +0.3 37,155 - -0.2 37,155 - +0.1 37,155 - -0.1 37,155 - -0.1 37,155 - +0.4 37,155 - +1.0 37,220 - GFF2625 0.12 -0.1 37,340 + GFF2625 0.18 -0.4 37,445 + GFF2625 0.23 +0.0 37,499 + GFF2625 0.25 +0.7 37,499 + GFF2625 0.25 -0.1 37,500 - GFF2625 0.25 -0.3 37,500 - GFF2625 0.25 -0.5 37,565 + GFF2625 0.28 -0.6 37,565 + GFF2625 0.28 -0.5 37,566 - GFF2625 0.28 -0.4 37,612 + GFF2625 0.30 +0.2 37,641 - GFF2625 0.32 +1.4 37,751 + GFF2625 0.37 -0.7
Or see this region's nucleotide sequence