Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2614 and GFF2615 are separated by 4 nucleotides GFF2615 and GFF2616 are separated by 272 nucleotides GFF2616 and GFF2617 are separated by 10 nucleotides GFF2617 and GFF2618 are separated by 467 nucleotides
GFF2614 - no description, at 19,908 to 20,075
GFF2614
GFF2615 - no description, at 20,080 to 20,259
GFF2615
GFF2616 - no description, at 20,532 to 21,017
GFF2616
GFF2617 - no description, at 21,028 to 21,192
GFF2617
GFF2618 - no description, at 21,660 to 22,049
GFF2618
Position (kb) 20
21
22 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 19.614 kb on - strand at 19.614 kb on - strand at 19.614 kb on - strand at 19.622 kb on + strand at 19.622 kb on + strand at 19.622 kb on + strand at 19.622 kb on + strand at 19.622 kb on + strand at 19.622 kb on + strand at 19.622 kb on + strand at 19.622 kb on + strand at 19.622 kb on + strand at 19.622 kb on + strand at 19.622 kb on + strand at 19.622 kb on + strand at 19.623 kb on - strand at 19.623 kb on - strand at 19.623 kb on - strand at 19.623 kb on - strand at 19.623 kb on - strand at 19.623 kb on - strand at 19.623 kb on - strand at 19.623 kb on - strand at 19.623 kb on - strand at 19.623 kb on - strand at 19.623 kb on - strand at 19.625 kb on + strand at 19.625 kb on + strand at 19.626 kb on - strand at 19.626 kb on - strand at 19.641 kb on - strand at 19.641 kb on - strand at 19.641 kb on - strand at 19.641 kb on - strand at 19.641 kb on - strand at 19.641 kb on - strand at 19.641 kb on - strand at 19.668 kb on - strand at 19.668 kb on - strand at 19.668 kb on - strand at 19.668 kb on - strand at 19.754 kb on + strand at 19.754 kb on + strand at 19.754 kb on + strand at 19.754 kb on + strand at 19.754 kb on + strand at 19.754 kb on + strand at 19.754 kb on + strand at 19.754 kb on + strand at 19.754 kb on + strand at 19.754 kb on + strand at 19.754 kb on + strand at 19.754 kb on + strand at 19.754 kb on + strand at 19.754 kb on + strand at 19.754 kb on + strand at 19.798 kb on + strand at 19.798 kb on + strand at 19.798 kb on + strand at 19.799 kb on - strand at 19.805 kb on + strand at 19.805 kb on + strand at 19.806 kb on - strand at 19.806 kb on - strand at 19.825 kb on + strand at 19.825 kb on + strand at 19.825 kb on + strand at 19.825 kb on + strand at 19.825 kb on + strand at 19.825 kb on + strand at 19.825 kb on + strand at 19.825 kb on + strand at 19.825 kb on + strand at 19.825 kb on + strand at 19.825 kb on + strand at 19.826 kb on - strand at 19.826 kb on - strand at 19.826 kb on - strand at 19.884 kb on + strand at 19.885 kb on - strand at 19.885 kb on - strand at 19.885 kb on - strand at 19.885 kb on - strand at 19.891 kb on + strand at 19.891 kb on + strand at 19.891 kb on + strand at 19.891 kb on + strand at 19.891 kb on + strand at 19.891 kb on + strand at 19.891 kb on + strand at 19.891 kb on + strand at 19.891 kb on + strand at 19.891 kb on + strand at 19.891 kb on + strand at 19.891 kb on + strand at 19.891 kb on + strand at 19.891 kb on + strand at 19.891 kb on + strand at 19.891 kb on + strand at 19.891 kb on + strand at 19.892 kb on - strand at 19.892 kb on - strand at 19.892 kb on - strand at 19.892 kb on - strand at 19.892 kb on - strand at 19.892 kb on - strand at 19.892 kb on - strand at 19.892 kb on - strand at 19.906 kb on + strand at 19.906 kb on + strand at 19.906 kb on + strand at 19.907 kb on - strand at 19.907 kb on - strand at 19.907 kb on - strand at 19.907 kb on - strand at 19.907 kb on - strand at 19.907 kb on - strand at 19.907 kb on - strand at 19.926 kb on - strand, within GFF2614 at 19.942 kb on + strand, within GFF2614 at 19.943 kb on - strand, within GFF2614 at 20.062 kb on + strand at 20.073 kb on + strand at 20.073 kb on + strand at 20.074 kb on - strand at 20.074 kb on - strand at 20.074 kb on - strand at 20.074 kb on - strand at 20.081 kb on + strand at 20.082 kb on - strand at 20.108 kb on + strand, within GFF2615 at 20.173 kb on - strand, within GFF2615 at 20.296 kb on - strand at 20.296 kb on - strand at 20.411 kb on + strand at 20.411 kb on + strand at 20.411 kb on + strand at 20.443 kb on - strand at 20.524 kb on + strand at 20.533 kb on + strand at 20.593 kb on + strand, within GFF2616 at 20.594 kb on - strand, within GFF2616 at 20.594 kb on - strand, within GFF2616 at 20.722 kb on + strand, within GFF2616 at 20.729 kb on + strand, within GFF2616 at 20.729 kb on + strand, within GFF2616 at 20.730 kb on - strand, within GFF2616 at 20.730 kb on - strand, within GFF2616 at 20.731 kb on + strand, within GFF2616 at 20.735 kb on + strand, within GFF2616 at 20.943 kb on + strand, within GFF2616 at 20.944 kb on - strand, within GFF2616 at 21.006 kb on - strand at 21.029 kb on + strand at 21.030 kb on - strand at 21.030 kb on - strand at 21.030 kb on - strand at 21.048 kb on + strand, within GFF2617 at 21.048 kb on + strand, within GFF2617 at 21.202 kb on + strand at 21.202 kb on + strand at 21.202 kb on + strand at 21.202 kb on + strand at 21.202 kb on + strand at 21.202 kb on + strand at 21.202 kb on + strand at 21.202 kb on + strand at 21.202 kb on + strand at 21.203 kb on - strand at 21.203 kb on - strand at 21.204 kb on + strand at 21.204 kb on + strand at 21.204 kb on + strand at 21.204 kb on + strand at 21.205 kb on - strand at 21.205 kb on - strand at 21.205 kb on - strand at 21.205 kb on - strand at 21.205 kb on - strand at 21.210 kb on + strand at 21.210 kb on + strand at 21.210 kb on + strand at 21.210 kb on + strand at 21.211 kb on - strand at 21.211 kb on - strand at 21.262 kb on + strand at 21.262 kb on + strand at 21.262 kb on + strand at 21.262 kb on + strand at 21.262 kb on + strand at 21.262 kb on + strand at 21.263 kb on - strand at 21.263 kb on - strand at 21.263 kb on - strand at 21.275 kb on + strand at 21.275 kb on + strand at 21.275 kb on + strand at 21.275 kb on + strand at 21.275 kb on + strand at 21.276 kb on - strand at 21.276 kb on - strand at 21.276 kb on - strand at 21.276 kb on - strand at 21.276 kb on - strand at 21.276 kb on - strand at 21.276 kb on - strand at 21.276 kb on - strand at 21.276 kb on - strand at 21.276 kb on - strand at 21.276 kb on - strand at 21.277 kb on + strand at 21.278 kb on - strand at 21.340 kb on + strand at 21.405 kb on + strand at 21.405 kb on + strand at 21.406 kb on - strand at 21.406 kb on - strand at 21.426 kb on + strand at 21.426 kb on + strand at 21.427 kb on - strand at 21.461 kb on - strand at 21.498 kb on + strand at 21.498 kb on + strand at 21.498 kb on + strand at 21.499 kb on - strand at 21.499 kb on - strand at 21.499 kb on - strand at 21.499 kb on - strand at 21.499 kb on - strand at 21.501 kb on + strand at 21.502 kb on - strand at 21.502 kb on - strand at 21.502 kb on - strand at 21.507 kb on + strand at 21.516 kb on + strand at 21.517 kb on - strand at 21.517 kb on - strand at 21.517 kb on - strand at 21.517 kb on - strand at 21.561 kb on + strand at 21.561 kb on + strand at 21.606 kb on + strand at 21.606 kb on + strand at 21.606 kb on + strand at 21.606 kb on + strand at 21.607 kb on - strand at 21.607 kb on - strand at 21.607 kb on - strand at 21.607 kb on - strand at 21.607 kb on - strand at 21.607 kb on - strand at 21.661 kb on + strand at 21.662 kb on - strand at 21.662 kb on - strand at 21.671 kb on - strand at 21.763 kb on + strand, within GFF2618 at 21.786 kb on + strand, within GFF2618 at 21.787 kb on - strand, within GFF2618 at 21.787 kb on - strand, within GFF2618 at 21.879 kb on + strand, within GFF2618 at 21.917 kb on + strand, within GFF2618 at 21.948 kb on - strand, within GFF2618
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 19,614 - +0.3 19,614 - +0.6 19,614 - +0.8 19,622 + -0.1 19,622 + +1.3 19,622 + +1.0 19,622 + +0.3 19,622 + -0.6 19,622 + -0.1 19,622 + -0.0 19,622 + +0.9 19,622 + +0.2 19,622 + +0.4 19,622 + -0.7 19,622 + -0.0 19,623 - -0.7 19,623 - -0.1 19,623 - +0.3 19,623 - -0.3 19,623 - -1.7 19,623 - -0.1 19,623 - +0.1 19,623 - -0.4 19,623 - +0.8 19,623 - +1.3 19,623 - -0.1 19,625 + -0.5 19,625 + +1.9 19,626 - -0.4 19,626 - +0.1 19,641 - -1.9 19,641 - -0.4 19,641 - -0.1 19,641 - -0.4 19,641 - +0.3 19,641 - +0.1 19,641 - -0.1 19,668 - +0.5 19,668 - +0.5 19,668 - +0.1 19,668 - -0.4 19,754 + -0.4 19,754 + +1.0 19,754 + -0.7 19,754 + -0.7 19,754 + +0.4 19,754 + +0.4 19,754 + +0.0 19,754 + -0.3 19,754 + +0.5 19,754 + +1.9 19,754 + -0.5 19,754 + -0.5 19,754 + +0.6 19,754 + -0.3 19,754 + -0.1 19,798 + +1.4 19,798 + +0.3 19,798 + -0.3 19,799 - +0.3 19,805 + -0.2 19,805 + -0.2 19,806 - +0.4 19,806 - -0.7 19,825 + +0.9 19,825 + +0.3 19,825 + -0.2 19,825 + -0.6 19,825 + +0.1 19,825 + +1.3 19,825 + +1.2 19,825 + +0.5 19,825 + +0.2 19,825 + +0.4 19,825 + +0.0 19,826 - -0.8 19,826 - +1.0 19,826 - +0.9 19,884 + +0.2 19,885 - -1.2 19,885 - -0.6 19,885 - +0.6 19,885 - +0.4 19,891 + +0.9 19,891 + +0.1 19,891 + +0.4 19,891 + -0.4 19,891 + +0.3 19,891 + +0.6 19,891 + -1.1 19,891 + +0.3 19,891 + +0.4 19,891 + -0.2 19,891 + +0.6 19,891 + +2.6 19,891 + -0.1 19,891 + +0.2 19,891 + -1.2 19,891 + +0.6 19,891 + +0.2 19,892 - -1.1 19,892 - -0.2 19,892 - +0.3 19,892 - -1.3 19,892 - +0.6 19,892 - -0.0 19,892 - -0.7 19,892 - -0.8 19,906 + +0.0 19,906 + -0.2 19,906 + +0.4 19,907 - -1.0 19,907 - -0.1 19,907 - -0.1 19,907 - +0.4 19,907 - +2.9 19,907 - +0.7 19,907 - -0.1 19,926 - GFF2614 0.11 +0.4 19,942 + GFF2614 0.20 -0.4 19,943 - GFF2614 0.21 -0.2 20,062 + +0.9 20,073 + -0.5 20,073 + -0.2 20,074 - -0.4 20,074 - +0.0 20,074 - +0.9 20,074 - -0.4 20,081 + +0.2 20,082 - -1.3 20,108 + GFF2615 0.16 -0.8 20,173 - GFF2615 0.52 +0.5 20,296 - +1.0 20,296 - +0.6 20,411 + -0.2 20,411 + -1.1 20,411 + +0.4 20,443 - -0.2 20,524 + +0.2 20,533 + +1.9 20,593 + GFF2616 0.13 -0.1 20,594 - GFF2616 0.13 +0.0 20,594 - GFF2616 0.13 -0.2 20,722 + GFF2616 0.39 -0.2 20,729 + GFF2616 0.41 +1.0 20,729 + GFF2616 0.41 +0.3 20,730 - GFF2616 0.41 +0.9 20,730 - GFF2616 0.41 -0.3 20,731 + GFF2616 0.41 +0.6 20,735 + GFF2616 0.42 +0.3 20,943 + GFF2616 0.85 +0.6 20,944 - GFF2616 0.85 +1.6 21,006 - -0.1 21,029 + +0.1 21,030 - -0.4 21,030 - -1.1 21,030 - +0.4 21,048 + GFF2617 0.12 -0.1 21,048 + GFF2617 0.12 -0.1 21,202 + +1.1 21,202 + +0.3 21,202 + +1.2 21,202 + -0.2 21,202 + -0.5 21,202 + +1.4 21,202 + -0.2 21,202 + -0.1 21,202 + +1.0 21,203 - +0.2 21,203 - -0.1 21,204 + +1.4 21,204 + +0.4 21,204 + +0.9 21,204 + -0.1 21,205 - +0.1 21,205 - +2.4 21,205 - -0.5 21,205 - -0.2 21,205 - -0.2 21,210 + -1.1 21,210 + -0.1 21,210 + +0.7 21,210 + +1.2 21,211 - +0.9 21,211 - -0.2 21,262 + +1.1 21,262 + +1.5 21,262 + -0.7 21,262 + +0.1 21,262 + +0.1 21,262 + +0.7 21,263 - -0.3 21,263 - -1.7 21,263 - +1.8 21,275 + +0.2 21,275 + -1.2 21,275 + +0.4 21,275 + -1.2 21,275 + -1.7 21,276 - +0.2 21,276 - +0.3 21,276 - -0.6 21,276 - +1.1 21,276 - -1.6 21,276 - +1.4 21,276 - -0.6 21,276 - -0.1 21,276 - -0.0 21,276 - +0.7 21,276 - -0.4 21,277 + +0.3 21,278 - -0.2 21,340 + -0.7 21,405 + -0.5 21,405 + +0.1 21,406 - +0.0 21,406 - +0.1 21,426 + -0.6 21,426 + +0.7 21,427 - -1.4 21,461 - +0.6 21,498 + +1.0 21,498 + +0.4 21,498 + -0.3 21,499 - -1.3 21,499 - +0.4 21,499 - -0.1 21,499 - -0.1 21,499 - +0.0 21,501 + -0.3 21,502 - -0.1 21,502 - +1.9 21,502 - -1.3 21,507 + -0.2 21,516 + +0.1 21,517 - +0.2 21,517 - +0.2 21,517 - +0.5 21,517 - +0.0 21,561 + -0.6 21,561 + +0.3 21,606 + -1.1 21,606 + +0.0 21,606 + -0.6 21,606 + -0.2 21,607 - +0.3 21,607 - +2.9 21,607 - +0.3 21,607 - -0.3 21,607 - +0.4 21,607 - -0.0 21,661 + -0.4 21,662 - +0.1 21,662 - +0.2 21,671 - +1.0 21,763 + GFF2618 0.26 +1.2 21,786 + GFF2618 0.32 -0.3 21,787 - GFF2618 0.33 +0.6 21,787 - GFF2618 0.33 -1.8 21,879 + GFF2618 0.56 +0.1 21,917 + GFF2618 0.66 +1.6 21,948 - GFF2618 0.74 -1.6
Or see this region's nucleotide sequence