Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2598 and GFF2599 are separated by 16 nucleotides GFF2599 and GFF2600 are separated by 28 nucleotides GFF2600 and GFF2601 are separated by 199 nucleotides GFF2601 and GFF2602 are separated by 8 nucleotides
GFF2598 - 3-carboxy-cis,cis-muconate cycloisomerase (EC 5.5.1.2), at 3,579 to 4,793
GFF2598
GFF2599 - Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25), at 4,810 to 5,643
GFF2599
GFF2600 - Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25), at 5,672 to 6,595
GFF2600
GFF2601 - Transcriptional regulator, IclR family, at 6,795 to 7,580
GFF2601
GFF2602 - no description, at 7,589 to 8,254
GFF2602
Position (kb) 5
6
7 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4.787 kb on + strand at 4.788 kb on - strand at 4.788 kb on - strand at 4.814 kb on + strand at 4.815 kb on - strand at 4.815 kb on - strand at 4.837 kb on + strand at 4.837 kb on + strand at 4.837 kb on + strand at 4.837 kb on + strand at 4.837 kb on + strand at 4.837 kb on + strand at 4.837 kb on + strand at 4.837 kb on + strand at 4.838 kb on - strand at 4.838 kb on - strand at 4.838 kb on - strand at 4.838 kb on - strand at 4.838 kb on - strand at 4.880 kb on + strand at 4.881 kb on - strand at 4.964 kb on + strand, within GFF2599 at 4.964 kb on + strand, within GFF2599 at 4.965 kb on - strand, within GFF2599 at 4.965 kb on - strand, within GFF2599 at 5.081 kb on + strand, within GFF2599 at 5.126 kb on + strand, within GFF2599 at 5.126 kb on + strand, within GFF2599 at 5.126 kb on + strand, within GFF2599 at 5.501 kb on + strand, within GFF2599 at 5.502 kb on - strand, within GFF2599 at 5.570 kb on + strand at 5.570 kb on + strand at 5.570 kb on + strand at 5.570 kb on + strand at 5.570 kb on + strand at 5.570 kb on + strand at 5.570 kb on + strand at 5.570 kb on + strand at 5.570 kb on + strand at 5.570 kb on + strand at 5.570 kb on + strand at 5.570 kb on + strand at 5.570 kb on + strand at 5.571 kb on - strand at 5.571 kb on - strand at 5.571 kb on - strand at 5.571 kb on - strand at 5.571 kb on - strand at 5.571 kb on - strand at 5.571 kb on - strand at 5.571 kb on - strand at 5.571 kb on - strand at 5.571 kb on - strand at 5.571 kb on - strand at 5.571 kb on - strand at 5.571 kb on - strand at 5.693 kb on - strand at 5.695 kb on - strand at 5.737 kb on - strand at 5.737 kb on - strand at 5.737 kb on - strand at 5.737 kb on - strand at 5.803 kb on - strand, within GFF2600 at 5.803 kb on - strand, within GFF2600 at 5.811 kb on + strand, within GFF2600 at 5.811 kb on + strand, within GFF2600 at 5.811 kb on + strand, within GFF2600 at 5.811 kb on + strand, within GFF2600 at 5.811 kb on + strand, within GFF2600 at 5.811 kb on + strand, within GFF2600 at 5.811 kb on + strand, within GFF2600 at 5.811 kb on + strand, within GFF2600 at 5.811 kb on + strand, within GFF2600 at 5.811 kb on + strand, within GFF2600 at 5.811 kb on + strand, within GFF2600 at 5.811 kb on + strand, within GFF2600 at 5.812 kb on - strand, within GFF2600 at 5.812 kb on - strand, within GFF2600 at 5.812 kb on - strand, within GFF2600 at 5.812 kb on - strand, within GFF2600 at 5.812 kb on - strand, within GFF2600 at 5.812 kb on - strand, within GFF2600 at 5.812 kb on - strand, within GFF2600 at 5.812 kb on - strand, within GFF2600 at 5.812 kb on - strand, within GFF2600 at 5.812 kb on - strand, within GFF2600 at 5.812 kb on - strand, within GFF2600 at 5.812 kb on - strand, within GFF2600 at 6.012 kb on + strand, within GFF2600 at 6.013 kb on - strand, within GFF2600 at 6.013 kb on - strand, within GFF2600 at 6.013 kb on - strand, within GFF2600 at 6.013 kb on - strand, within GFF2600 at 6.013 kb on - strand, within GFF2600 at 6.111 kb on + strand, within GFF2600 at 6.111 kb on + strand, within GFF2600 at 6.111 kb on + strand, within GFF2600 at 6.111 kb on + strand, within GFF2600 at 6.111 kb on + strand, within GFF2600 at 6.112 kb on - strand, within GFF2600 at 6.112 kb on - strand, within GFF2600 at 6.112 kb on - strand, within GFF2600 at 6.561 kb on + strand at 6.561 kb on + strand at 6.561 kb on + strand at 6.562 kb on - strand at 6.562 kb on - strand at 6.647 kb on + strand at 6.647 kb on + strand at 6.648 kb on - strand at 6.648 kb on - strand at 6.648 kb on - strand at 6.678 kb on - strand at 6.759 kb on + strand at 6.760 kb on - strand at 6.760 kb on - strand at 6.760 kb on - strand at 6.760 kb on - strand at 6.990 kb on + strand, within GFF2601 at 6.990 kb on + strand, within GFF2601 at 6.990 kb on + strand, within GFF2601 at 6.990 kb on + strand, within GFF2601 at 6.990 kb on + strand, within GFF2601 at 6.991 kb on - strand, within GFF2601 at 6.991 kb on - strand, within GFF2601 at 6.991 kb on - strand, within GFF2601 at 7.053 kb on + strand, within GFF2601 at 7.054 kb on - strand, within GFF2601 at 7.054 kb on - strand, within GFF2601 at 7.054 kb on - strand, within GFF2601 at 7.132 kb on - strand, within GFF2601 at 7.132 kb on - strand, within GFF2601 at 7.132 kb on - strand, within GFF2601 at 7.164 kb on + strand, within GFF2601 at 7.164 kb on + strand, within GFF2601 at 7.164 kb on + strand, within GFF2601 at 7.165 kb on - strand, within GFF2601 at 7.165 kb on - strand, within GFF2601 at 7.165 kb on - strand, within GFF2601 at 7.165 kb on - strand, within GFF2601 at 7.165 kb on - strand, within GFF2601 at 7.206 kb on + strand, within GFF2601 at 7.206 kb on + strand, within GFF2601 at 7.206 kb on + strand, within GFF2601 at 7.207 kb on - strand, within GFF2601 at 7.207 kb on - strand, within GFF2601 at 7.207 kb on - strand, within GFF2601 at 7.207 kb on - strand, within GFF2601 at 7.238 kb on - strand, within GFF2601
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 4,787 + -1.4 4,788 - -0.3 4,788 - +1.3 4,814 + +0.5 4,815 - -0.0 4,815 - +0.2 4,837 + +1.6 4,837 + -0.2 4,837 + -0.2 4,837 + -0.2 4,837 + +0.3 4,837 + -1.1 4,837 + +0.4 4,837 + -1.0 4,838 - +0.2 4,838 - -0.4 4,838 - +0.7 4,838 - -0.9 4,838 - -0.9 4,880 + +1.0 4,881 - +2.2 4,964 + GFF2599 0.18 -0.2 4,964 + GFF2599 0.18 +0.1 4,965 - GFF2599 0.19 +1.4 4,965 - GFF2599 0.19 +0.3 5,081 + GFF2599 0.32 +1.6 5,126 + GFF2599 0.38 +0.8 5,126 + GFF2599 0.38 -0.3 5,126 + GFF2599 0.38 -1.4 5,501 + GFF2599 0.83 +1.2 5,502 - GFF2599 0.83 -1.9 5,570 + -0.6 5,570 + +0.4 5,570 + -0.4 5,570 + -0.8 5,570 + +0.2 5,570 + -0.2 5,570 + +0.1 5,570 + +0.2 5,570 + +0.7 5,570 + -0.1 5,570 + -1.7 5,570 + +0.8 5,570 + +0.5 5,571 - +0.3 5,571 - -0.4 5,571 - -0.6 5,571 - -0.5 5,571 - -0.4 5,571 - -0.3 5,571 - +0.5 5,571 - -0.3 5,571 - -0.1 5,571 - +0.7 5,571 - -0.1 5,571 - -0.1 5,571 - +0.9 5,693 - -0.7 5,695 - +1.9 5,737 - -1.7 5,737 - +0.1 5,737 - +0.2 5,737 - +1.1 5,803 - GFF2600 0.14 +0.6 5,803 - GFF2600 0.14 +0.4 5,811 + GFF2600 0.15 +0.1 5,811 + GFF2600 0.15 +0.3 5,811 + GFF2600 0.15 +0.3 5,811 + GFF2600 0.15 +1.5 5,811 + GFF2600 0.15 -0.9 5,811 + GFF2600 0.15 -0.3 5,811 + GFF2600 0.15 +1.3 5,811 + GFF2600 0.15 +0.6 5,811 + GFF2600 0.15 +0.4 5,811 + GFF2600 0.15 +1.3 5,811 + GFF2600 0.15 -0.2 5,811 + GFF2600 0.15 +0.5 5,812 - GFF2600 0.15 +0.5 5,812 - GFF2600 0.15 -0.4 5,812 - GFF2600 0.15 +0.1 5,812 - GFF2600 0.15 -0.1 5,812 - GFF2600 0.15 +0.3 5,812 - GFF2600 0.15 +0.2 5,812 - GFF2600 0.15 -0.3 5,812 - GFF2600 0.15 +0.6 5,812 - GFF2600 0.15 +0.8 5,812 - GFF2600 0.15 +0.6 5,812 - GFF2600 0.15 -0.3 5,812 - GFF2600 0.15 -0.1 6,012 + GFF2600 0.37 +0.2 6,013 - GFF2600 0.37 -0.3 6,013 - GFF2600 0.37 -0.1 6,013 - GFF2600 0.37 -0.1 6,013 - GFF2600 0.37 -0.4 6,013 - GFF2600 0.37 -0.4 6,111 + GFF2600 0.48 -0.4 6,111 + GFF2600 0.48 +0.2 6,111 + GFF2600 0.48 +1.0 6,111 + GFF2600 0.48 -0.3 6,111 + GFF2600 0.48 -0.3 6,112 - GFF2600 0.48 +1.1 6,112 - GFF2600 0.48 -0.4 6,112 - GFF2600 0.48 -1.1 6,561 + -0.2 6,561 + -0.7 6,561 + +0.2 6,562 - -0.7 6,562 - +1.3 6,647 + -0.9 6,647 + +1.2 6,648 - +0.3 6,648 - -1.8 6,648 - -0.1 6,678 - +0.3 6,759 + +0.9 6,760 - -0.0 6,760 - +1.0 6,760 - +0.3 6,760 - -0.3 6,990 + GFF2601 0.25 -1.1 6,990 + GFF2601 0.25 -2.5 6,990 + GFF2601 0.25 -0.1 6,990 + GFF2601 0.25 +0.7 6,990 + GFF2601 0.25 -0.3 6,991 - GFF2601 0.25 +0.9 6,991 - GFF2601 0.25 +0.1 6,991 - GFF2601 0.25 +0.2 7,053 + GFF2601 0.33 +1.2 7,054 - GFF2601 0.33 -0.6 7,054 - GFF2601 0.33 +0.0 7,054 - GFF2601 0.33 -0.6 7,132 - GFF2601 0.43 -0.4 7,132 - GFF2601 0.43 -0.8 7,132 - GFF2601 0.43 +2.6 7,164 + GFF2601 0.47 +0.0 7,164 + GFF2601 0.47 -1.6 7,164 + GFF2601 0.47 -0.1 7,165 - GFF2601 0.47 +0.3 7,165 - GFF2601 0.47 +0.7 7,165 - GFF2601 0.47 -0.1 7,165 - GFF2601 0.47 -1.9 7,165 - GFF2601 0.47 -0.7 7,206 + GFF2601 0.52 +0.2 7,206 + GFF2601 0.52 +0.1 7,206 + GFF2601 0.52 +0.5 7,207 - GFF2601 0.52 -1.8 7,207 - GFF2601 0.52 +0.2 7,207 - GFF2601 0.52 -1.5 7,207 - GFF2601 0.52 +0.7 7,238 - GFF2601 0.56 +1.2
Or see this region's nucleotide sequence