Strain Fitness in Variovorax sp. SCN45 around GFF259

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF258 and GFF259 are separated by 168 nucleotidesGFF259 and GFF260 are separated by 29 nucleotidesGFF260 and GFF261 are separated by 191 nucleotides GFF258 - Ribosomal protein L3 N(5)-glutamine methyltransferase (EC 2.1.1.298), at 290,262 to 291,140 GFF258 GFF259 - Bis-ABC ATPase YheS, at 291,309 to 293,309 GFF259 GFF260 - FIG00931356: hypothetical protein, at 293,339 to 293,842 GFF260 GFF261 - no description, at 294,034 to 294,267 GFF261 Position (kb) 291 292 293 294Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 290.499 kb on + strand, within GFF258at 290.499 kb on + strand, within GFF258at 290.499 kb on + strand, within GFF258at 290.500 kb on - strand, within GFF258at 290.538 kb on + strand, within GFF258at 290.538 kb on + strand, within GFF258at 290.538 kb on + strand, within GFF258at 290.538 kb on + strand, within GFF258at 290.538 kb on + strand, within GFF258at 290.538 kb on + strand, within GFF258at 290.538 kb on + strand, within GFF258at 290.538 kb on + strand, within GFF258at 290.538 kb on + strand, within GFF258at 290.538 kb on + strand, within GFF258at 290.538 kb on + strand, within GFF258at 290.539 kb on - strand, within GFF258at 290.539 kb on - strand, within GFF258at 290.539 kb on - strand, within GFF258at 290.539 kb on - strand, within GFF258at 290.539 kb on - strand, within GFF258at 290.539 kb on - strand, within GFF258at 290.608 kb on - strand, within GFF258at 290.608 kb on - strand, within GFF258at 290.688 kb on + strand, within GFF258at 290.689 kb on - strand, within GFF258at 290.826 kb on + strand, within GFF258at 290.826 kb on + strand, within GFF258at 290.827 kb on - strand, within GFF258at 290.853 kb on + strand, within GFF258at 290.853 kb on + strand, within GFF258at 290.853 kb on + strand, within GFF258at 290.853 kb on + strand, within GFF258at 290.853 kb on + strand, within GFF258at 290.853 kb on + strand, within GFF258at 290.853 kb on + strand, within GFF258at 290.853 kb on + strand, within GFF258at 290.854 kb on - strand, within GFF258at 290.854 kb on - strand, within GFF258at 291.027 kb on + strand, within GFF258at 291.027 kb on + strand, within GFF258at 291.027 kb on + strand, within GFF258at 291.028 kb on - strand, within GFF258at 291.028 kb on - strand, within GFF258at 291.028 kb on - strand, within GFF258at 291.028 kb on - strand, within GFF258at 291.028 kb on - strand, within GFF258at 291.028 kb on - strand, within GFF258at 291.028 kb on - strand, within GFF258at 291.225 kb on + strandat 291.225 kb on + strandat 291.226 kb on - strandat 291.247 kb on + strandat 291.248 kb on - strandat 291.248 kb on - strandat 291.248 kb on - strandat 291.248 kb on - strandat 291.248 kb on - strandat 291.296 kb on - strandat 291.483 kb on + strandat 291.483 kb on + strandat 291.483 kb on + strandat 291.483 kb on + strandat 291.483 kb on + strandat 291.483 kb on + strandat 291.483 kb on + strandat 291.483 kb on + strandat 291.484 kb on - strandat 291.484 kb on - strandat 291.484 kb on - strandat 291.484 kb on - strandat 291.484 kb on - strandat 291.484 kb on - strandat 291.484 kb on - strandat 291.484 kb on - strandat 291.484 kb on - strandat 291.484 kb on - strandat 291.484 kb on - strandat 291.484 kb on - strandat 291.484 kb on - strandat 291.484 kb on - strandat 291.622 kb on - strand, within GFF259at 291.622 kb on - strand, within GFF259at 291.672 kb on + strand, within GFF259at 291.672 kb on + strand, within GFF259at 291.672 kb on + strand, within GFF259at 291.672 kb on + strand, within GFF259at 291.672 kb on + strand, within GFF259at 291.672 kb on + strand, within GFF259at 291.672 kb on + strand, within GFF259at 291.673 kb on - strand, within GFF259at 291.673 kb on - strand, within GFF259at 291.915 kb on + strand, within GFF259at 291.915 kb on + strand, within GFF259at 291.915 kb on + strand, within GFF259at 291.915 kb on + strand, within GFF259at 291.915 kb on + strand, within GFF259at 291.915 kb on + strand, within GFF259at 291.915 kb on + strand, within GFF259at 291.916 kb on - strand, within GFF259at 292.011 kb on + strand, within GFF259at 292.011 kb on + strand, within GFF259at 292.011 kb on + strand, within GFF259at 292.023 kb on + strand, within GFF259at 292.023 kb on + strand, within GFF259at 292.023 kb on + strand, within GFF259at 292.023 kb on + strand, within GFF259at 292.023 kb on + strand, within GFF259at 292.023 kb on + strand, within GFF259at 292.023 kb on + strand, within GFF259at 292.023 kb on + strand, within GFF259at 292.024 kb on - strand, within GFF259at 292.024 kb on - strand, within GFF259at 292.024 kb on - strand, within GFF259at 292.024 kb on - strand, within GFF259at 292.024 kb on - strand, within GFF259at 292.024 kb on - strand, within GFF259at 292.024 kb on - strand, within GFF259at 292.024 kb on - strand, within GFF259at 292.024 kb on - strand, within GFF259at 292.024 kb on - strand, within GFF259at 292.024 kb on - strand, within GFF259at 292.024 kb on - strand, within GFF259at 292.024 kb on - strand, within GFF259at 292.024 kb on - strand, within GFF259at 292.024 kb on - strand, within GFF259at 292.024 kb on - strand, within GFF259at 292.024 kb on - strand, within GFF259at 292.024 kb on - strand, within GFF259at 292.024 kb on - strand, within GFF259at 292.256 kb on + strand, within GFF259at 292.296 kb on + strand, within GFF259at 292.297 kb on - strand, within GFF259at 292.494 kb on + strand, within GFF259at 292.494 kb on + strand, within GFF259at 292.494 kb on + strand, within GFF259at 292.495 kb on - strand, within GFF259at 292.573 kb on + strand, within GFF259at 292.926 kb on + strand, within GFF259at 292.926 kb on + strand, within GFF259at 292.927 kb on - strand, within GFF259at 292.927 kb on - strand, within GFF259at 292.935 kb on + strand, within GFF259at 292.935 kb on + strand, within GFF259at 292.935 kb on + strand, within GFF259at 292.935 kb on + strand, within GFF259at 292.936 kb on - strand, within GFF259at 292.936 kb on - strand, within GFF259at 292.936 kb on - strand, within GFF259at 293.699 kb on + strand, within GFF260at 293.699 kb on + strand, within GFF260at 293.699 kb on + strand, within GFF260at 293.699 kb on + strand, within GFF260at 293.699 kb on + strand, within GFF260at 293.699 kb on + strand, within GFF260at 293.699 kb on + strand, within GFF260at 293.699 kb on + strand, within GFF260at 293.699 kb on + strand, within GFF260at 293.699 kb on + strand, within GFF260at 293.699 kb on + strand, within GFF260at 293.699 kb on + strand, within GFF260at 293.699 kb on + strand, within GFF260at 293.699 kb on + strand, within GFF260at 293.699 kb on + strand, within GFF260at 293.699 kb on + strand, within GFF260at 293.699 kb on + strand, within GFF260at 293.699 kb on + strand, within GFF260at 293.699 kb on + strand, within GFF260at 293.699 kb on + strand, within GFF260at 293.699 kb on + strand, within GFF260at 293.699 kb on + strand, within GFF260at 293.699 kb on + strand, within GFF260at 293.699 kb on + strand, within GFF260at 293.699 kb on + strand, within GFF260at 293.700 kb on - strand, within GFF260at 293.700 kb on - strand, within GFF260at 293.700 kb on - strand, within GFF260at 293.700 kb on - strand, within GFF260at 293.700 kb on - strand, within GFF260at 293.700 kb on - strand, within GFF260at 293.700 kb on - strand, within GFF260at 293.700 kb on - strand, within GFF260at 293.700 kb on - strand, within GFF260at 293.700 kb on - strand, within GFF260at 293.700 kb on - strand, within GFF260at 293.700 kb on - strand, within GFF260at 293.700 kb on - strand, within GFF260at 293.811 kb on + strandat 293.811 kb on + strandat 293.812 kb on - strandat 294.062 kb on + strand, within GFF261at 294.063 kb on - strand, within GFF261at 294.063 kb on - strand, within GFF261at 294.063 kb on - strand, within GFF261at 294.063 kb on - strand, within GFF261at 294.063 kb on - strand, within GFF261at 294.063 kb on - strand, within GFF261at 294.063 kb on - strand, within GFF261at 294.063 kb on - strand, within GFF261at 294.063 kb on - strand, within GFF261at 294.107 kb on + strand, within GFF261at 294.107 kb on + strand, within GFF261at 294.107 kb on + strand, within GFF261at 294.107 kb on + strand, within GFF261at 294.107 kb on + strand, within GFF261at 294.108 kb on - strand, within GFF261at 294.108 kb on - strand, within GFF261at 294.108 kb on - strand, within GFF261at 294.108 kb on - strand, within GFF261at 294.108 kb on - strand, within GFF261at 294.108 kb on - strand, within GFF261at 294.108 kb on - strand, within GFF261at 294.108 kb on - strand, within GFF261at 294.128 kb on + strand, within GFF261at 294.128 kb on + strand, within GFF261at 294.129 kb on - strand, within GFF261at 294.129 kb on - strand, within GFF261at 294.129 kb on - strand, within GFF261at 294.129 kb on - strand, within GFF261at 294.129 kb on - strand, within GFF261at 294.129 kb on - strand, within GFF261at 294.129 kb on - strand, within GFF261at 294.247 kb on + strandat 294.247 kb on + strandat 294.248 kb on - strandat 294.248 kb on - strandat 294.248 kb on - strandat 294.292 kb on - strandat 294.296 kb on + strandat 294.296 kb on + strandat 294.296 kb on + strandat 294.296 kb on + strandat 294.297 kb on - strandat 294.297 kb on - strandat 294.297 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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290,499 + GFF258 0.27 -0.4
290,499 + GFF258 0.27 -0.2
290,499 + GFF258 0.27 +0.8
290,500 - GFF258 0.27 -0.1
290,538 + GFF258 0.31 -0.5
290,538 + GFF258 0.31 -1.1
290,538 + GFF258 0.31 +0.2
290,538 + GFF258 0.31 +0.1
290,538 + GFF258 0.31 -0.3
290,538 + GFF258 0.31 -0.4
290,538 + GFF258 0.31 -0.6
290,538 + GFF258 0.31 -0.6
290,538 + GFF258 0.31 +1.0
290,538 + GFF258 0.31 -0.6
290,538 + GFF258 0.31 +0.7
290,539 - GFF258 0.32 -1.5
290,539 - GFF258 0.32 +0.7
290,539 - GFF258 0.32 -1.2
290,539 - GFF258 0.32 +0.7
290,539 - GFF258 0.32 +0.1
290,539 - GFF258 0.32 -0.2
290,608 - GFF258 0.39 -0.1
290,608 - GFF258 0.39 -0.3
290,688 + GFF258 0.48 -2.4
290,689 - GFF258 0.49 -0.2
290,826 + GFF258 0.64 -0.4
290,826 + GFF258 0.64 -0.0
290,827 - GFF258 0.64 +0.3
290,853 + GFF258 0.67 +0.3
290,853 + GFF258 0.67 +1.9
290,853 + GFF258 0.67 -0.8
290,853 + GFF258 0.67 -0.3
290,853 + GFF258 0.67 -0.4
290,853 + GFF258 0.67 -0.1
290,853 + GFF258 0.67 -1.1
290,853 + GFF258 0.67 -0.2
290,854 - GFF258 0.67 +0.9
290,854 - GFF258 0.67 -0.8
291,027 + GFF258 0.87 -0.4
291,027 + GFF258 0.87 +0.2
291,027 + GFF258 0.87 +0.1
291,028 - GFF258 0.87 -0.3
291,028 - GFF258 0.87 -0.2
291,028 - GFF258 0.87 -0.8
291,028 - GFF258 0.87 -0.7
291,028 - GFF258 0.87 -0.9
291,028 - GFF258 0.87 -1.2
291,028 - GFF258 0.87 -1.1
291,225 + -0.8
291,225 + +4.3
291,226 - -0.7
291,247 + -0.5
291,248 - +2.3
291,248 - -0.5
291,248 - -1.7
291,248 - -0.9
291,248 - +1.9
291,296 - -0.5
291,483 + +0.0
291,483 + -0.3
291,483 + -0.8
291,483 + +0.6
291,483 + +0.8
291,483 + +0.2
291,483 + +0.2
291,483 + -0.8
291,484 - -1.0
291,484 - -0.7
291,484 - -0.1
291,484 - +1.1
291,484 - -0.3
291,484 - -0.9
291,484 - -1.2
291,484 - -1.0
291,484 - -0.1
291,484 - -0.1
291,484 - +0.1
291,484 - -2.2
291,484 - +0.8
291,484 - +0.5
291,622 - GFF259 0.16 -0.0
291,622 - GFF259 0.16 -0.8
291,672 + GFF259 0.18 +0.1
291,672 + GFF259 0.18 -0.6
291,672 + GFF259 0.18 +1.1
291,672 + GFF259 0.18 +0.6
291,672 + GFF259 0.18 -0.1
291,672 + GFF259 0.18 +1.1
291,672 + GFF259 0.18 +0.1
291,673 - GFF259 0.18 -1.2
291,673 - GFF259 0.18 -1.3
291,915 + GFF259 0.30 -0.7
291,915 + GFF259 0.30 -0.9
291,915 + GFF259 0.30 -0.5
291,915 + GFF259 0.30 +0.7
291,915 + GFF259 0.30 -0.1
291,915 + GFF259 0.30 +0.9
291,915 + GFF259 0.30 -0.3
291,916 - GFF259 0.30 -0.2
292,011 + GFF259 0.35 -1.3
292,011 + GFF259 0.35 -1.2
292,011 + GFF259 0.35 +0.9
292,023 + GFF259 0.36 +0.1
292,023 + GFF259 0.36 -0.2
292,023 + GFF259 0.36 -1.7
292,023 + GFF259 0.36 +0.6
292,023 + GFF259 0.36 -0.6
292,023 + GFF259 0.36 -1.2
292,023 + GFF259 0.36 -0.4
292,023 + GFF259 0.36 +0.3
292,024 - GFF259 0.36 -1.3
292,024 - GFF259 0.36 -0.1
292,024 - GFF259 0.36 +0.3
292,024 - GFF259 0.36 -0.8
292,024 - GFF259 0.36 -0.7
292,024 - GFF259 0.36 -1.4
292,024 - GFF259 0.36 +0.3
292,024 - GFF259 0.36 -0.2
292,024 - GFF259 0.36 -1.9
292,024 - GFF259 0.36 +0.1
292,024 - GFF259 0.36 -0.5
292,024 - GFF259 0.36 -0.1
292,024 - GFF259 0.36 -0.3
292,024 - GFF259 0.36 -1.4
292,024 - GFF259 0.36 -0.3
292,024 - GFF259 0.36 -0.2
292,024 - GFF259 0.36 -1.1
292,024 - GFF259 0.36 -0.1
292,024 - GFF259 0.36 -0.4
292,256 + GFF259 0.47 -0.4
292,296 + GFF259 0.49 -1.7
292,297 - GFF259 0.49 -0.2
292,494 + GFF259 0.59 -0.5
292,494 + GFF259 0.59 -1.7
292,494 + GFF259 0.59 -0.8
292,495 - GFF259 0.59 -0.5
292,573 + GFF259 0.63 +0.6
292,926 + GFF259 0.81 -0.8
292,926 + GFF259 0.81 -2.4
292,927 - GFF259 0.81 -0.1
292,927 - GFF259 0.81 -0.4
292,935 + GFF259 0.81 +0.8
292,935 + GFF259 0.81 -0.1
292,935 + GFF259 0.81 +0.1
292,935 + GFF259 0.81 -0.5
292,936 - GFF259 0.81 +0.7
292,936 - GFF259 0.81 -0.2
292,936 - GFF259 0.81 -0.1
293,699 + GFF260 0.71 -1.1
293,699 + GFF260 0.71 -0.9
293,699 + GFF260 0.71 -2.5
293,699 + GFF260 0.71 +0.5
293,699 + GFF260 0.71 -0.4
293,699 + GFF260 0.71 -0.5
293,699 + GFF260 0.71 +0.4
293,699 + GFF260 0.71 +0.3
293,699 + GFF260 0.71 +0.9
293,699 + GFF260 0.71 -1.2
293,699 + GFF260 0.71 -0.1
293,699 + GFF260 0.71 +0.3
293,699 + GFF260 0.71 -0.9
293,699 + GFF260 0.71 -0.1
293,699 + GFF260 0.71 -1.9
293,699 + GFF260 0.71 -1.0
293,699 + GFF260 0.71 +1.5
293,699 + GFF260 0.71 -0.8
293,699 + GFF260 0.71 +1.4
293,699 + GFF260 0.71 -0.5
293,699 + GFF260 0.71 -0.1
293,699 + GFF260 0.71 +0.6
293,699 + GFF260 0.71 -0.3
293,699 + GFF260 0.71 -0.1
293,699 + GFF260 0.71 -0.3
293,700 - GFF260 0.72 -0.2
293,700 - GFF260 0.72 +0.3
293,700 - GFF260 0.72 +0.3
293,700 - GFF260 0.72 -0.5
293,700 - GFF260 0.72 -0.7
293,700 - GFF260 0.72 +1.1
293,700 - GFF260 0.72 +0.3
293,700 - GFF260 0.72 -1.5
293,700 - GFF260 0.72 -0.4
293,700 - GFF260 0.72 +0.9
293,700 - GFF260 0.72 +0.6
293,700 - GFF260 0.72 +0.3
293,700 - GFF260 0.72 +0.9
293,811 + -0.7
293,811 + -0.7
293,812 - -0.8
294,062 + GFF261 0.12 +0.1
294,063 - GFF261 0.12 -0.6
294,063 - GFF261 0.12 -0.1
294,063 - GFF261 0.12 +1.1
294,063 - GFF261 0.12 -0.9
294,063 - GFF261 0.12 -0.6
294,063 - GFF261 0.12 -0.9
294,063 - GFF261 0.12 +0.5
294,063 - GFF261 0.12 +1.2
294,063 - GFF261 0.12 -0.9
294,107 + GFF261 0.31 -0.3
294,107 + GFF261 0.31 -1.1
294,107 + GFF261 0.31 -0.2
294,107 + GFF261 0.31 -0.2
294,107 + GFF261 0.31 -0.6
294,108 - GFF261 0.32 -1.9
294,108 - GFF261 0.32 +0.7
294,108 - GFF261 0.32 +0.2
294,108 - GFF261 0.32 -0.3
294,108 - GFF261 0.32 +1.2
294,108 - GFF261 0.32 -0.7
294,108 - GFF261 0.32 -1.1
294,108 - GFF261 0.32 +0.7
294,128 + GFF261 0.40 +0.3
294,128 + GFF261 0.40 +0.3
294,129 - GFF261 0.41 -0.9
294,129 - GFF261 0.41 -0.4
294,129 - GFF261 0.41 -0.8
294,129 - GFF261 0.41 -1.4
294,129 - GFF261 0.41 +0.4
294,129 - GFF261 0.41 -0.1
294,129 - GFF261 0.41 +0.2
294,247 + -0.0
294,247 + -2.3
294,248 - +0.3
294,248 - -0.4
294,248 - +1.3
294,292 - -0.5
294,296 + -1.4
294,296 + -0.2
294,296 + -0.1
294,296 + -3.0
294,297 - -0.6
294,297 - -0.4
294,297 - +0.6

Or see this region's nucleotide sequence