Strain Fitness in Variovorax sp. SCN45 around GFF2519

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2518 and GFF2519 overlap by 4 nucleotidesGFF2519 and GFF2520 are separated by 13 nucleotides GFF2518 - Prolyl-tRNA synthetase (EC 6.1.1.15), bacterial type, at 578,809 to 580,626 GFF2518 GFF2519 - FIG016425: Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains), at 580,623 to 581,291 GFF2519 GFF2520 - UPF0053 inner membrane protein YtfL, at 581,305 to 582,615 GFF2520 Position (kb) 580 581 582Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 580.836 kb on + strand, within GFF2519at 580.836 kb on + strand, within GFF2519at 580.836 kb on + strand, within GFF2519at 580.837 kb on - strand, within GFF2519at 580.837 kb on - strand, within GFF2519at 580.837 kb on - strand, within GFF2519at 580.837 kb on - strand, within GFF2519at 580.837 kb on - strand, within GFF2519at 580.837 kb on - strand, within GFF2519at 580.926 kb on + strand, within GFF2519at 580.926 kb on + strand, within GFF2519at 580.926 kb on + strand, within GFF2519at 580.927 kb on - strand, within GFF2519at 580.927 kb on - strand, within GFF2519at 580.927 kb on - strand, within GFF2519at 581.031 kb on + strand, within GFF2519at 581.031 kb on + strand, within GFF2519at 581.031 kb on + strand, within GFF2519at 581.031 kb on + strand, within GFF2519at 581.031 kb on + strand, within GFF2519at 581.031 kb on + strand, within GFF2519at 581.032 kb on - strand, within GFF2519at 581.032 kb on - strand, within GFF2519at 581.032 kb on - strand, within GFF2519at 581.032 kb on - strand, within GFF2519at 581.032 kb on - strand, within GFF2519at 581.032 kb on - strand, within GFF2519at 581.032 kb on - strand, within GFF2519at 581.032 kb on - strand, within GFF2519at 581.139 kb on + strand, within GFF2519at 581.139 kb on + strand, within GFF2519at 581.140 kb on - strand, within GFF2519at 581.140 kb on - strand, within GFF2519at 581.166 kb on + strand, within GFF2519at 581.166 kb on + strand, within GFF2519at 581.166 kb on + strand, within GFF2519at 581.166 kb on + strand, within GFF2519at 581.166 kb on + strand, within GFF2519at 581.166 kb on + strand, within GFF2519at 581.166 kb on + strand, within GFF2519at 581.166 kb on + strand, within GFF2519at 581.166 kb on + strand, within GFF2519at 581.166 kb on + strand, within GFF2519at 581.166 kb on + strand, within GFF2519at 581.166 kb on + strand, within GFF2519at 581.167 kb on - strand, within GFF2519at 581.167 kb on - strand, within GFF2519at 581.167 kb on - strand, within GFF2519at 581.167 kb on - strand, within GFF2519at 581.167 kb on - strand, within GFF2519at 581.167 kb on - strand, within GFF2519at 581.167 kb on - strand, within GFF2519at 581.167 kb on - strand, within GFF2519at 581.167 kb on - strand, within GFF2519at 581.167 kb on - strand, within GFF2519at 581.167 kb on - strand, within GFF2519at 581.167 kb on - strand, within GFF2519at 581.167 kb on - strand, within GFF2519at 581.167 kb on - strand, within GFF2519at 581.167 kb on - strand, within GFF2519at 581.167 kb on - strand, within GFF2519at 581.167 kb on - strand, within GFF2519at 581.167 kb on - strand, within GFF2519at 581.167 kb on - strand, within GFF2519at 581.167 kb on - strand, within GFF2519at 581.167 kb on - strand, within GFF2519at 581.184 kb on + strand, within GFF2519at 581.184 kb on + strand, within GFF2519at 581.185 kb on - strand, within GFF2519at 581.366 kb on + strandat 581.366 kb on + strandat 581.366 kb on + strandat 581.367 kb on - strandat 581.367 kb on - strandat 581.367 kb on - strandat 581.367 kb on - strandat 581.367 kb on - strandat 581.367 kb on - strandat 581.367 kb on - strandat 581.367 kb on - strandat 581.367 kb on - strandat 581.394 kb on + strandat 581.394 kb on + strandat 581.394 kb on + strandat 581.394 kb on + strandat 581.394 kb on + strandat 581.394 kb on + strandat 581.394 kb on + strandat 581.394 kb on + strandat 581.394 kb on + strandat 581.394 kb on + strandat 581.395 kb on - strandat 581.395 kb on - strandat 581.395 kb on - strandat 581.395 kb on - strandat 581.395 kb on - strandat 581.395 kb on - strandat 581.395 kb on - strandat 581.395 kb on - strandat 581.395 kb on - strandat 581.395 kb on - strandat 581.395 kb on - strandat 581.396 kb on + strandat 581.396 kb on + strandat 581.396 kb on + strandat 581.397 kb on - strandat 581.474 kb on + strand, within GFF2520at 581.474 kb on + strand, within GFF2520at 581.474 kb on + strand, within GFF2520at 581.475 kb on - strand, within GFF2520at 581.475 kb on - strand, within GFF2520at 581.475 kb on - strand, within GFF2520at 581.475 kb on - strand, within GFF2520at 581.475 kb on - strand, within GFF2520at 581.663 kb on + strand, within GFF2520at 581.663 kb on + strand, within GFF2520at 581.663 kb on + strand, within GFF2520at 581.663 kb on + strand, within GFF2520at 581.663 kb on + strand, within GFF2520at 581.664 kb on - strand, within GFF2520at 581.664 kb on - strand, within GFF2520at 581.664 kb on - strand, within GFF2520at 581.664 kb on - strand, within GFF2520at 581.664 kb on - strand, within GFF2520at 581.664 kb on - strand, within GFF2520at 581.721 kb on - strand, within GFF2520at 581.834 kb on + strand, within GFF2520at 581.834 kb on + strand, within GFF2520at 581.835 kb on - strand, within GFF2520at 581.835 kb on - strand, within GFF2520at 581.873 kb on + strand, within GFF2520

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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580,836 + GFF2519 0.32 +4.3
580,836 + GFF2519 0.32 +3.9
580,836 + GFF2519 0.32 +4.4
580,837 - GFF2519 0.32 +3.2
580,837 - GFF2519 0.32 +3.8
580,837 - GFF2519 0.32 +4.2
580,837 - GFF2519 0.32 +4.0
580,837 - GFF2519 0.32 +3.8
580,837 - GFF2519 0.32 +3.5
580,926 + GFF2519 0.45 +3.8
580,926 + GFF2519 0.45 +3.9
580,926 + GFF2519 0.45 +3.5
580,927 - GFF2519 0.45 +3.6
580,927 - GFF2519 0.45 +3.8
580,927 - GFF2519 0.45 +3.3
581,031 + GFF2519 0.61 +3.9
581,031 + GFF2519 0.61 +3.0
581,031 + GFF2519 0.61 +4.2
581,031 + GFF2519 0.61 +4.0
581,031 + GFF2519 0.61 +4.2
581,031 + GFF2519 0.61 +3.9
581,032 - GFF2519 0.61 +4.1
581,032 - GFF2519 0.61 +3.9
581,032 - GFF2519 0.61 +3.8
581,032 - GFF2519 0.61 +4.2
581,032 - GFF2519 0.61 +3.3
581,032 - GFF2519 0.61 +3.7
581,032 - GFF2519 0.61 +3.9
581,032 - GFF2519 0.61 +4.7
581,139 + GFF2519 0.77 +4.0
581,139 + GFF2519 0.77 +4.2
581,140 - GFF2519 0.77 +3.7
581,140 - GFF2519 0.77 +3.7
581,166 + GFF2519 0.81 +3.8
581,166 + GFF2519 0.81 +4.1
581,166 + GFF2519 0.81 +2.6
581,166 + GFF2519 0.81 +3.9
581,166 + GFF2519 0.81 +3.8
581,166 + GFF2519 0.81 +4.1
581,166 + GFF2519 0.81 +3.5
581,166 + GFF2519 0.81 +3.7
581,166 + GFF2519 0.81 +4.7
581,166 + GFF2519 0.81 +4.3
581,166 + GFF2519 0.81 +2.9
581,166 + GFF2519 0.81 +3.7
581,167 - GFF2519 0.81 +4.0
581,167 - GFF2519 0.81 +3.5
581,167 - GFF2519 0.81 +4.0
581,167 - GFF2519 0.81 +3.4
581,167 - GFF2519 0.81 +3.6
581,167 - GFF2519 0.81 +3.7
581,167 - GFF2519 0.81 +3.2
581,167 - GFF2519 0.81 +4.0
581,167 - GFF2519 0.81 +3.1
581,167 - GFF2519 0.81 +4.1
581,167 - GFF2519 0.81 +3.7
581,167 - GFF2519 0.81 +2.6
581,167 - GFF2519 0.81 +3.7
581,167 - GFF2519 0.81 +4.3
581,167 - GFF2519 0.81 +3.9
581,167 - GFF2519 0.81 +4.0
581,167 - GFF2519 0.81 +3.6
581,167 - GFF2519 0.81 +3.7
581,167 - GFF2519 0.81 +5.0
581,167 - GFF2519 0.81 +4.0
581,167 - GFF2519 0.81 +3.9
581,184 + GFF2519 0.84 +3.7
581,184 + GFF2519 0.84 +3.4
581,185 - GFF2519 0.84 +3.7
581,366 + +0.2
581,366 + -1.4
581,366 + +0.3
581,367 - +0.1
581,367 - +1.7
581,367 - -1.8
581,367 - -0.6
581,367 - +0.3
581,367 - +0.2
581,367 - +0.1
581,367 - +0.4
581,367 - +0.1
581,394 + -0.1
581,394 + -0.1
581,394 + +0.2
581,394 + +0.0
581,394 + +0.6
581,394 + -0.3
581,394 + +0.4
581,394 + +0.1
581,394 + +0.7
581,394 + -0.1
581,395 - -0.7
581,395 - -0.4
581,395 - +0.4
581,395 - -0.9
581,395 - +1.0
581,395 - +0.6
581,395 - +0.7
581,395 - +0.6
581,395 - +0.4
581,395 - -0.6
581,395 - +1.5
581,396 + +0.1
581,396 + -0.5
581,396 + -1.5
581,397 - +0.7
581,474 + GFF2520 0.13 +0.1
581,474 + GFF2520 0.13 +0.1
581,474 + GFF2520 0.13 -0.7
581,475 - GFF2520 0.13 +0.1
581,475 - GFF2520 0.13 -0.3
581,475 - GFF2520 0.13 -0.5
581,475 - GFF2520 0.13 +1.5
581,475 - GFF2520 0.13 +0.6
581,663 + GFF2520 0.27 +0.5
581,663 + GFF2520 0.27 +1.0
581,663 + GFF2520 0.27 -0.7
581,663 + GFF2520 0.27 +0.4
581,663 + GFF2520 0.27 +1.4
581,664 - GFF2520 0.27 +0.9
581,664 - GFF2520 0.27 -1.0
581,664 - GFF2520 0.27 -0.1
581,664 - GFF2520 0.27 +0.2
581,664 - GFF2520 0.27 -0.1
581,664 - GFF2520 0.27 -0.1
581,721 - GFF2520 0.32 +0.1
581,834 + GFF2520 0.40 +1.3
581,834 + GFF2520 0.40 +0.5
581,835 - GFF2520 0.40 -0.2
581,835 - GFF2520 0.40 +1.9
581,873 + GFF2520 0.43 +0.1

Or see this region's nucleotide sequence