Strain Fitness in Variovorax sp. SCN45 around GFF251

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF249 and GFF250 are separated by 19 nucleotidesGFF250 and GFF251 are separated by 91 nucleotidesGFF251 and GFF252 are separated by 22 nucleotides GFF249 - N-acetylglutamate synthase (EC 2.3.1.1), at 280,607 to 281,953 GFF249 GFF250 - Homoserine/homoserine lactone efflux protein, at 281,973 to 282,611 GFF250 GFF251 - hypothetical protein, at 282,703 to 283,704 GFF251 GFF252 - Zinc-type alcohol dehydrogenase-like protein, at 283,727 to 284,743 GFF252 Position (kb) 282 283 284Strain fitness (log2 ratio) -2 -1 0 1 2at 282.216 kb on + strand, within GFF250at 282.216 kb on + strand, within GFF250at 282.216 kb on + strand, within GFF250at 282.216 kb on + strand, within GFF250at 282.216 kb on + strand, within GFF250at 282.217 kb on - strand, within GFF250at 282.217 kb on - strand, within GFF250at 282.217 kb on - strand, within GFF250at 282.363 kb on + strand, within GFF250at 282.363 kb on + strand, within GFF250at 282.363 kb on + strand, within GFF250at 282.363 kb on + strand, within GFF250at 282.363 kb on + strand, within GFF250at 282.363 kb on + strand, within GFF250at 282.363 kb on + strand, within GFF250at 282.363 kb on + strand, within GFF250at 282.363 kb on + strand, within GFF250at 282.364 kb on - strand, within GFF250at 282.364 kb on - strand, within GFF250at 282.364 kb on - strand, within GFF250at 282.364 kb on - strand, within GFF250at 282.426 kb on + strand, within GFF250at 282.426 kb on + strand, within GFF250at 282.426 kb on + strand, within GFF250at 282.426 kb on + strand, within GFF250at 282.426 kb on + strand, within GFF250at 282.427 kb on - strand, within GFF250at 282.427 kb on - strand, within GFF250at 282.427 kb on - strand, within GFF250at 282.427 kb on - strand, within GFF250at 282.427 kb on - strand, within GFF250at 282.427 kb on - strand, within GFF250at 282.427 kb on - strand, within GFF250at 282.427 kb on - strand, within GFF250at 282.427 kb on - strand, within GFF250at 282.427 kb on - strand, within GFF250at 282.480 kb on + strand, within GFF250at 282.480 kb on + strand, within GFF250at 282.480 kb on + strand, within GFF250at 282.480 kb on + strand, within GFF250at 282.480 kb on + strand, within GFF250at 282.480 kb on + strand, within GFF250at 282.481 kb on - strand, within GFF250at 282.591 kb on + strandat 282.709 kb on + strandat 282.710 kb on - strandat 282.710 kb on - strandat 282.710 kb on - strandat 282.856 kb on + strand, within GFF251at 282.856 kb on + strand, within GFF251at 282.856 kb on + strand, within GFF251at 282.856 kb on + strand, within GFF251at 282.856 kb on + strand, within GFF251at 282.857 kb on - strand, within GFF251at 282.857 kb on - strand, within GFF251at 282.857 kb on - strand, within GFF251at 282.857 kb on - strand, within GFF251at 282.865 kb on + strand, within GFF251at 282.865 kb on + strand, within GFF251at 282.865 kb on + strand, within GFF251at 282.865 kb on + strand, within GFF251at 282.865 kb on + strand, within GFF251at 282.865 kb on + strand, within GFF251at 282.865 kb on + strand, within GFF251at 282.865 kb on + strand, within GFF251at 282.866 kb on - strand, within GFF251at 282.866 kb on - strand, within GFF251at 282.866 kb on - strand, within GFF251at 282.866 kb on - strand, within GFF251at 282.919 kb on + strand, within GFF251at 282.919 kb on + strand, within GFF251at 282.919 kb on + strand, within GFF251at 282.920 kb on - strand, within GFF251at 282.920 kb on - strand, within GFF251at 282.920 kb on - strand, within GFF251at 282.920 kb on - strand, within GFF251at 282.920 kb on - strand, within GFF251at 282.976 kb on - strand, within GFF251at 283.126 kb on + strand, within GFF251at 283.126 kb on + strand, within GFF251at 283.126 kb on + strand, within GFF251at 283.126 kb on + strand, within GFF251at 283.127 kb on - strand, within GFF251at 283.127 kb on - strand, within GFF251at 283.127 kb on - strand, within GFF251at 283.127 kb on - strand, within GFF251at 283.144 kb on + strand, within GFF251at 283.144 kb on + strand, within GFF251at 283.144 kb on + strand, within GFF251at 283.144 kb on + strand, within GFF251at 283.145 kb on - strand, within GFF251at 283.145 kb on - strand, within GFF251at 283.145 kb on - strand, within GFF251at 283.145 kb on - strand, within GFF251at 283.189 kb on + strand, within GFF251at 283.190 kb on - strand, within GFF251at 283.190 kb on - strand, within GFF251at 283.309 kb on + strand, within GFF251at 283.312 kb on + strand, within GFF251at 283.312 kb on + strand, within GFF251at 283.312 kb on + strand, within GFF251at 283.312 kb on + strand, within GFF251at 283.312 kb on + strand, within GFF251at 283.313 kb on - strand, within GFF251at 283.330 kb on + strand, within GFF251at 283.330 kb on + strand, within GFF251at 283.331 kb on - strand, within GFF251at 283.331 kb on - strand, within GFF251at 283.428 kb on - strand, within GFF251at 283.428 kb on - strand, within GFF251at 283.651 kb on + strandat 283.651 kb on + strandat 283.651 kb on + strandat 283.949 kb on - strand, within GFF252at 283.950 kb on + strand, within GFF252at 283.950 kb on + strand, within GFF252at 283.950 kb on + strand, within GFF252at 283.950 kb on + strand, within GFF252at 283.951 kb on - strand, within GFF252at 284.025 kb on + strand, within GFF252at 284.079 kb on + strand, within GFF252at 284.079 kb on + strand, within GFF252at 284.079 kb on + strand, within GFF252at 284.079 kb on + strand, within GFF252at 284.079 kb on + strand, within GFF252at 284.079 kb on + strand, within GFF252at 284.079 kb on + strand, within GFF252at 284.079 kb on + strand, within GFF252at 284.080 kb on - strand, within GFF252at 284.080 kb on - strand, within GFF252at 284.080 kb on - strand, within GFF252at 284.080 kb on - strand, within GFF252at 284.080 kb on - strand, within GFF252at 284.081 kb on - strand, within GFF252at 284.121 kb on + strand, within GFF252at 284.121 kb on + strand, within GFF252at 284.121 kb on + strand, within GFF252at 284.121 kb on + strand, within GFF252at 284.122 kb on - strand, within GFF252at 284.122 kb on - strand, within GFF252at 284.122 kb on - strand, within GFF252at 284.122 kb on - strand, within GFF252at 284.122 kb on - strand, within GFF252at 284.122 kb on - strand, within GFF252at 284.145 kb on + strand, within GFF252at 284.421 kb on + strand, within GFF252at 284.421 kb on + strand, within GFF252at 284.421 kb on + strand, within GFF252at 284.422 kb on - strand, within GFF252at 284.422 kb on - strand, within GFF252at 284.422 kb on - strand, within GFF252at 284.469 kb on + strand, within GFF252at 284.469 kb on + strand, within GFF252at 284.470 kb on - strand, within GFF252at 284.470 kb on - strand, within GFF252at 284.470 kb on - strand, within GFF252at 284.470 kb on - strand, within GFF252at 284.470 kb on - strand, within GFF252at 284.470 kb on - strand, within GFF252

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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282,216 + GFF250 0.38 +0.3
282,216 + GFF250 0.38 -0.2
282,216 + GFF250 0.38 +0.5
282,216 + GFF250 0.38 -0.1
282,216 + GFF250 0.38 +0.5
282,217 - GFF250 0.38 +0.8
282,217 - GFF250 0.38 +0.1
282,217 - GFF250 0.38 -1.2
282,363 + GFF250 0.61 +0.3
282,363 + GFF250 0.61 +0.3
282,363 + GFF250 0.61 +1.2
282,363 + GFF250 0.61 +0.3
282,363 + GFF250 0.61 +0.1
282,363 + GFF250 0.61 -0.4
282,363 + GFF250 0.61 -0.4
282,363 + GFF250 0.61 +1.3
282,363 + GFF250 0.61 +0.3
282,364 - GFF250 0.61 -1.0
282,364 - GFF250 0.61 -0.1
282,364 - GFF250 0.61 -1.4
282,364 - GFF250 0.61 -0.1
282,426 + GFF250 0.71 -0.9
282,426 + GFF250 0.71 -2.0
282,426 + GFF250 0.71 -0.2
282,426 + GFF250 0.71 -0.7
282,426 + GFF250 0.71 -0.1
282,427 - GFF250 0.71 -0.1
282,427 - GFF250 0.71 -0.4
282,427 - GFF250 0.71 +0.1
282,427 - GFF250 0.71 -0.6
282,427 - GFF250 0.71 +0.5
282,427 - GFF250 0.71 -1.4
282,427 - GFF250 0.71 -0.3
282,427 - GFF250 0.71 -0.1
282,427 - GFF250 0.71 +0.1
282,427 - GFF250 0.71 -0.1
282,480 + GFF250 0.79 -0.2
282,480 + GFF250 0.79 +0.6
282,480 + GFF250 0.79 -0.5
282,480 + GFF250 0.79 -1.5
282,480 + GFF250 0.79 -1.7
282,480 + GFF250 0.79 -0.8
282,481 - GFF250 0.79 -1.1
282,591 + -1.2
282,709 + -1.1
282,710 - -1.2
282,710 - -1.0
282,710 - -0.1
282,856 + GFF251 0.15 +0.3
282,856 + GFF251 0.15 -0.4
282,856 + GFF251 0.15 +1.1
282,856 + GFF251 0.15 +0.6
282,856 + GFF251 0.15 -0.8
282,857 - GFF251 0.15 -0.3
282,857 - GFF251 0.15 -1.1
282,857 - GFF251 0.15 -0.5
282,857 - GFF251 0.15 -0.3
282,865 + GFF251 0.16 -1.0
282,865 + GFF251 0.16 -0.6
282,865 + GFF251 0.16 -2.0
282,865 + GFF251 0.16 +0.6
282,865 + GFF251 0.16 -1.7
282,865 + GFF251 0.16 -0.3
282,865 + GFF251 0.16 -0.8
282,865 + GFF251 0.16 -0.4
282,866 - GFF251 0.16 +1.7
282,866 - GFF251 0.16 -0.3
282,866 - GFF251 0.16 -0.1
282,866 - GFF251 0.16 -1.0
282,919 + GFF251 0.22 -0.1
282,919 + GFF251 0.22 -0.2
282,919 + GFF251 0.22 -0.0
282,920 - GFF251 0.22 -0.5
282,920 - GFF251 0.22 -0.7
282,920 - GFF251 0.22 -0.9
282,920 - GFF251 0.22 +0.2
282,920 - GFF251 0.22 +0.7
282,976 - GFF251 0.27 -0.1
283,126 + GFF251 0.42 -0.1
283,126 + GFF251 0.42 +0.0
283,126 + GFF251 0.42 +0.3
283,126 + GFF251 0.42 -0.3
283,127 - GFF251 0.42 +0.2
283,127 - GFF251 0.42 -1.5
283,127 - GFF251 0.42 -1.5
283,127 - GFF251 0.42 +0.3
283,144 + GFF251 0.44 -0.3
283,144 + GFF251 0.44 +0.3
283,144 + GFF251 0.44 +0.9
283,144 + GFF251 0.44 +0.1
283,145 - GFF251 0.44 +1.5
283,145 - GFF251 0.44 -1.5
283,145 - GFF251 0.44 -0.1
283,145 - GFF251 0.44 -0.2
283,189 + GFF251 0.49 -0.6
283,190 - GFF251 0.49 +0.7
283,190 - GFF251 0.49 +0.8
283,309 + GFF251 0.60 -1.1
283,312 + GFF251 0.61 -0.7
283,312 + GFF251 0.61 -1.5
283,312 + GFF251 0.61 -0.2
283,312 + GFF251 0.61 -0.4
283,312 + GFF251 0.61 -0.7
283,313 - GFF251 0.61 +1.0
283,330 + GFF251 0.63 +0.1
283,330 + GFF251 0.63 +0.3
283,331 - GFF251 0.63 +0.4
283,331 - GFF251 0.63 +1.7
283,428 - GFF251 0.72 -0.1
283,428 - GFF251 0.72 +0.9
283,651 + -0.6
283,651 + -0.7
283,651 + -1.1
283,949 - GFF252 0.22 +0.9
283,950 + GFF252 0.22 -0.5
283,950 + GFF252 0.22 +0.1
283,950 + GFF252 0.22 +0.3
283,950 + GFF252 0.22 -0.9
283,951 - GFF252 0.22 +1.2
284,025 + GFF252 0.29 +0.8
284,079 + GFF252 0.35 +0.3
284,079 + GFF252 0.35 +0.8
284,079 + GFF252 0.35 +0.1
284,079 + GFF252 0.35 +0.3
284,079 + GFF252 0.35 -1.5
284,079 + GFF252 0.35 +1.3
284,079 + GFF252 0.35 -0.1
284,079 + GFF252 0.35 +1.2
284,080 - GFF252 0.35 -0.8
284,080 - GFF252 0.35 -0.7
284,080 - GFF252 0.35 +0.1
284,080 - GFF252 0.35 +0.5
284,080 - GFF252 0.35 -0.7
284,081 - GFF252 0.35 -0.2
284,121 + GFF252 0.39 +0.3
284,121 + GFF252 0.39 +0.9
284,121 + GFF252 0.39 -0.4
284,121 + GFF252 0.39 +0.3
284,122 - GFF252 0.39 -0.1
284,122 - GFF252 0.39 -0.5
284,122 - GFF252 0.39 -0.4
284,122 - GFF252 0.39 -0.1
284,122 - GFF252 0.39 -0.7
284,122 - GFF252 0.39 +0.3
284,145 + GFF252 0.41 -0.9
284,421 + GFF252 0.68 +0.5
284,421 + GFF252 0.68 -1.1
284,421 + GFF252 0.68 -0.6
284,422 - GFF252 0.68 -0.7
284,422 - GFF252 0.68 -1.1
284,422 - GFF252 0.68 -0.4
284,469 + GFF252 0.73 +0.3
284,469 + GFF252 0.73 -0.0
284,470 - GFF252 0.73 +0.3
284,470 - GFF252 0.73 -1.9
284,470 - GFF252 0.73 -1.1
284,470 - GFF252 0.73 -0.5
284,470 - GFF252 0.73 -0.0
284,470 - GFF252 0.73 +1.9

Or see this region's nucleotide sequence