Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2495 and GFF2496 are separated by 62 nucleotides GFF2496 and GFF2497 are separated by 169 nucleotides GFF2497 and GFF2498 are separated by 30 nucleotides
GFF2495 - Ornithine cyclodeaminase (EC 4.3.1.12), at 554,034 to 555,020
GFF2495
GFF2496 - hypothetical protein, at 555,083 to 555,391
GFF2496
GFF2497 - Protein translocase subunit SecA, at 555,561 to 558,347
GFF2497
GFF2498 - Glutamate N-acetyltransferase (EC 2.3.1.35) @ N-acetylglutamate synthase (EC 2.3.1.1), at 558,378 to 559,607
GFF2498
Position (kb) 555
556
557
558
559 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 555.094 kb on + strand at 555.094 kb on + strand at 555.094 kb on + strand at 555.094 kb on + strand at 555.094 kb on + strand at 555.094 kb on + strand at 555.094 kb on + strand at 555.094 kb on + strand at 555.095 kb on - strand at 555.095 kb on - strand at 555.095 kb on - strand at 555.095 kb on - strand at 555.095 kb on - strand at 555.388 kb on - strand at 555.388 kb on - strand at 555.388 kb on - strand at 555.395 kb on + strand at 555.395 kb on + strand at 555.407 kb on + strand at 555.422 kb on + strand at 555.422 kb on + strand at 555.422 kb on + strand at 555.422 kb on + strand at 555.423 kb on - strand at 555.423 kb on - strand at 555.423 kb on - strand at 555.423 kb on - strand at 555.503 kb on + strand at 555.503 kb on + strand at 555.503 kb on + strand at 555.503 kb on + strand at 555.503 kb on + strand at 555.503 kb on + strand at 555.503 kb on + strand at 555.503 kb on + strand at 555.503 kb on + strand at 555.503 kb on + strand at 558.159 kb on + strand at 558.159 kb on + strand at 558.159 kb on + strand at 558.159 kb on + strand at 558.159 kb on + strand at 558.159 kb on + strand at 558.160 kb on - strand at 558.160 kb on - strand at 558.160 kb on - strand at 558.318 kb on + strand at 558.318 kb on + strand at 558.318 kb on + strand at 558.319 kb on - strand at 558.319 kb on - strand at 558.319 kb on - strand at 558.319 kb on - strand at 558.319 kb on - strand at 558.319 kb on - strand at 558.319 kb on - strand at 558.319 kb on - strand at 558.362 kb on + strand at 558.362 kb on + strand at 558.362 kb on + strand at 558.362 kb on + strand at 558.362 kb on + strand at 558.362 kb on + strand at 558.363 kb on - strand at 558.363 kb on - strand at 558.363 kb on - strand at 559.287 kb on + strand, within GFF2498 at 559.287 kb on + strand, within GFF2498 at 559.287 kb on + strand, within GFF2498 at 559.288 kb on - strand, within GFF2498 at 559.326 kb on + strand, within GFF2498 at 559.326 kb on + strand, within GFF2498 at 559.326 kb on + strand, within GFF2498 at 559.327 kb on - strand, within GFF2498 at 559.327 kb on - strand, within GFF2498 at 559.327 kb on - strand, within GFF2498 at 559.327 kb on - strand, within GFF2498 at 559.327 kb on - strand, within GFF2498
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 555,094 + -0.1 555,094 + +0.6 555,094 + +1.4 555,094 + -0.8 555,094 + +0.3 555,094 + -0.2 555,094 + +1.3 555,094 + -0.6 555,095 - -0.5 555,095 - +1.9 555,095 - +1.1 555,095 - -0.4 555,095 - -0.2 555,388 - -1.3 555,388 - -1.6 555,388 - -0.7 555,395 + -0.9 555,395 + -0.4 555,407 + -0.4 555,422 + +0.3 555,422 + +0.3 555,422 + +3.9 555,422 + -0.7 555,423 - -0.6 555,423 - -0.3 555,423 - -0.7 555,423 - -0.8 555,503 + -0.8 555,503 + -0.5 555,503 + -0.8 555,503 + -0.4 555,503 + -0.9 555,503 + +0.3 555,503 + -0.4 555,503 + +0.3 555,503 + +0.2 555,503 + +0.5 558,159 + -0.6 558,159 + -1.1 558,159 + -1.0 558,159 + -0.1 558,159 + +1.1 558,159 + -2.0 558,160 - -1.3 558,160 - -0.7 558,160 - +0.2 558,318 + -0.2 558,318 + +0.1 558,318 + -2.0 558,319 - -1.1 558,319 - +0.0 558,319 - +0.4 558,319 - +1.9 558,319 - -1.9 558,319 - -0.8 558,319 - -0.5 558,319 - -0.1 558,362 + +0.1 558,362 + +0.0 558,362 + +0.3 558,362 + +0.4 558,362 + +0.3 558,362 + -0.2 558,363 - -0.9 558,363 - -1.2 558,363 - -0.3 559,287 + GFF2498 0.74 -0.7 559,287 + GFF2498 0.74 +0.0 559,287 + GFF2498 0.74 +0.9 559,288 - GFF2498 0.74 -1.9 559,326 + GFF2498 0.77 +0.9 559,326 + GFF2498 0.77 +0.0 559,326 + GFF2498 0.77 -0.5 559,327 - GFF2498 0.77 -0.1 559,327 - GFF2498 0.77 +0.0 559,327 - GFF2498 0.77 -0.6 559,327 - GFF2498 0.77 +0.1 559,327 - GFF2498 0.77 +0.1
Or see this region's nucleotide sequence