Strain Fitness in Variovorax sp. SCN45 around GFF2491

Experiment: phage_bap4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF2490 and GFF2491 are separated by 177 nucleotidesGFF2491 and GFF2492 are separated by 16 nucleotides GFF2490 - Transcriptional regulator, LysR family, at 548,888 to 549,808 GFF2490 GFF2491 - Threonine-synthase-like protein 3, at 549,986 to 551,134 GFF2491 GFF2492 - BUG/TctC family periplasmic protein, at 551,151 to 552,131 GFF2492 Position (kb) 549 550 551 552Strain fitness (log2 ratio) -2 -1 0 1 2 3at 549.012 kb on + strand, within GFF2490at 549.012 kb on + strand, within GFF2490at 549.012 kb on + strand, within GFF2490at 549.012 kb on + strand, within GFF2490at 549.012 kb on + strand, within GFF2490at 549.013 kb on - strand, within GFF2490at 549.013 kb on - strand, within GFF2490at 549.013 kb on - strand, within GFF2490at 549.013 kb on - strand, within GFF2490at 549.057 kb on + strand, within GFF2490at 549.058 kb on - strand, within GFF2490at 549.132 kb on + strand, within GFF2490at 549.133 kb on - strand, within GFF2490at 549.133 kb on - strand, within GFF2490at 549.133 kb on - strand, within GFF2490at 549.133 kb on - strand, within GFF2490at 549.133 kb on - strand, within GFF2490at 549.508 kb on - strand, within GFF2490at 549.508 kb on - strand, within GFF2490at 549.508 kb on - strand, within GFF2490at 549.833 kb on + strandat 549.847 kb on + strandat 549.867 kb on + strandat 549.867 kb on + strandat 549.885 kb on + strandat 549.885 kb on + strandat 549.885 kb on + strandat 549.885 kb on + strandat 549.885 kb on + strandat 549.885 kb on + strandat 549.886 kb on - strandat 549.886 kb on - strandat 549.886 kb on - strandat 549.886 kb on - strandat 549.886 kb on - strandat 549.886 kb on - strandat 549.886 kb on - strandat 549.886 kb on - strandat 549.886 kb on - strandat 549.886 kb on - strandat 550.064 kb on + strandat 550.139 kb on + strand, within GFF2491at 550.139 kb on + strand, within GFF2491at 550.139 kb on + strand, within GFF2491at 550.139 kb on + strand, within GFF2491at 550.140 kb on - strand, within GFF2491at 550.178 kb on + strand, within GFF2491at 550.178 kb on + strand, within GFF2491at 550.178 kb on + strand, within GFF2491at 550.178 kb on + strand, within GFF2491at 550.179 kb on - strand, within GFF2491at 550.406 kb on + strand, within GFF2491at 550.406 kb on + strand, within GFF2491at 550.446 kb on - strand, within GFF2491at 550.466 kb on + strand, within GFF2491at 550.466 kb on + strand, within GFF2491at 550.466 kb on + strand, within GFF2491at 550.466 kb on + strand, within GFF2491at 550.467 kb on - strand, within GFF2491at 550.467 kb on - strand, within GFF2491at 550.467 kb on - strand, within GFF2491at 550.467 kb on - strand, within GFF2491at 550.467 kb on - strand, within GFF2491at 550.467 kb on - strand, within GFF2491at 550.503 kb on - strand, within GFF2491at 550.556 kb on + strand, within GFF2491at 550.583 kb on + strand, within GFF2491at 550.583 kb on + strand, within GFF2491at 550.583 kb on + strand, within GFF2491at 550.584 kb on - strand, within GFF2491at 550.584 kb on - strand, within GFF2491at 550.584 kb on - strand, within GFF2491at 550.620 kb on + strand, within GFF2491at 550.620 kb on + strand, within GFF2491at 550.620 kb on + strand, within GFF2491at 550.620 kb on + strand, within GFF2491at 550.620 kb on + strand, within GFF2491at 550.620 kb on + strand, within GFF2491at 550.621 kb on - strand, within GFF2491at 550.621 kb on - strand, within GFF2491at 550.621 kb on - strand, within GFF2491at 550.621 kb on - strand, within GFF2491at 550.621 kb on - strand, within GFF2491at 550.621 kb on - strand, within GFF2491at 550.628 kb on + strand, within GFF2491at 550.628 kb on + strand, within GFF2491at 550.629 kb on - strand, within GFF2491at 550.629 kb on - strand, within GFF2491at 550.629 kb on - strand, within GFF2491at 550.629 kb on - strand, within GFF2491at 550.629 kb on - strand, within GFF2491at 550.629 kb on - strand, within GFF2491at 550.721 kb on + strand, within GFF2491at 550.722 kb on - strand, within GFF2491at 550.722 kb on - strand, within GFF2491at 550.722 kb on - strand, within GFF2491at 550.722 kb on - strand, within GFF2491at 550.722 kb on - strand, within GFF2491at 550.841 kb on + strand, within GFF2491at 550.841 kb on + strand, within GFF2491at 550.889 kb on + strand, within GFF2491at 550.889 kb on + strand, within GFF2491at 550.889 kb on + strand, within GFF2491at 550.889 kb on + strand, within GFF2491at 550.889 kb on + strand, within GFF2491at 550.889 kb on + strand, within GFF2491at 550.889 kb on + strand, within GFF2491at 550.890 kb on - strand, within GFF2491at 550.890 kb on - strand, within GFF2491at 551.140 kb on + strandat 551.141 kb on - strandat 551.141 kb on - strandat 551.415 kb on + strand, within GFF2492at 551.415 kb on + strand, within GFF2492at 551.416 kb on - strand, within GFF2492at 551.416 kb on - strand, within GFF2492at 551.416 kb on - strand, within GFF2492at 551.416 kb on - strand, within GFF2492at 551.416 kb on - strand, within GFF2492at 551.416 kb on - strand, within GFF2492at 551.828 kb on + strand, within GFF2492at 551.828 kb on + strand, within GFF2492at 551.829 kb on - strand, within GFF2492at 551.829 kb on - strand, within GFF2492

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
remove
549,012 + GFF2490 0.13 +0.9
549,012 + GFF2490 0.13 -0.0
549,012 + GFF2490 0.13 -0.9
549,012 + GFF2490 0.13 -0.1
549,012 + GFF2490 0.13 +0.1
549,013 - GFF2490 0.14 +0.6
549,013 - GFF2490 0.14 +1.9
549,013 - GFF2490 0.14 +0.6
549,013 - GFF2490 0.14 -0.6
549,057 + GFF2490 0.18 -0.8
549,058 - GFF2490 0.18 -1.3
549,132 + GFF2490 0.26 -0.0
549,133 - GFF2490 0.27 +0.0
549,133 - GFF2490 0.27 +0.1
549,133 - GFF2490 0.27 +0.4
549,133 - GFF2490 0.27 +1.6
549,133 - GFF2490 0.27 +0.1
549,508 - GFF2490 0.67 -0.1
549,508 - GFF2490 0.67 -1.3
549,508 - GFF2490 0.67 +0.5
549,833 + -0.2
549,847 + -0.5
549,867 + -0.8
549,867 + -0.0
549,885 + -0.1
549,885 + -0.9
549,885 + +1.1
549,885 + -0.0
549,885 + -0.3
549,885 + -0.1
549,886 - +0.5
549,886 - -0.5
549,886 - -0.2
549,886 - -0.6
549,886 - +0.1
549,886 - -0.9
549,886 - -1.1
549,886 - +0.3
549,886 - -0.7
549,886 - +0.1
550,064 + -0.9
550,139 + GFF2491 0.13 +0.3
550,139 + GFF2491 0.13 +0.2
550,139 + GFF2491 0.13 -0.2
550,139 + GFF2491 0.13 -0.4
550,140 - GFF2491 0.13 -0.6
550,178 + GFF2491 0.17 +0.3
550,178 + GFF2491 0.17 -0.8
550,178 + GFF2491 0.17 +0.7
550,178 + GFF2491 0.17 +0.1
550,179 - GFF2491 0.17 +1.5
550,406 + GFF2491 0.37 +0.1
550,406 + GFF2491 0.37 +1.6
550,446 - GFF2491 0.40 +0.1
550,466 + GFF2491 0.42 -0.6
550,466 + GFF2491 0.42 -0.0
550,466 + GFF2491 0.42 +0.0
550,466 + GFF2491 0.42 +0.4
550,467 - GFF2491 0.42 -0.6
550,467 - GFF2491 0.42 -1.0
550,467 - GFF2491 0.42 -0.1
550,467 - GFF2491 0.42 -0.7
550,467 - GFF2491 0.42 +0.2
550,467 - GFF2491 0.42 -1.1
550,503 - GFF2491 0.45 +0.3
550,556 + GFF2491 0.50 +0.4
550,583 + GFF2491 0.52 +0.2
550,583 + GFF2491 0.52 +0.0
550,583 + GFF2491 0.52 +0.7
550,584 - GFF2491 0.52 -0.1
550,584 - GFF2491 0.52 +0.1
550,584 - GFF2491 0.52 -0.4
550,620 + GFF2491 0.55 +0.4
550,620 + GFF2491 0.55 -0.5
550,620 + GFF2491 0.55 -0.3
550,620 + GFF2491 0.55 -0.2
550,620 + GFF2491 0.55 -0.1
550,620 + GFF2491 0.55 -0.0
550,621 - GFF2491 0.55 +3.6
550,621 - GFF2491 0.55 -0.7
550,621 - GFF2491 0.55 -0.3
550,621 - GFF2491 0.55 -0.3
550,621 - GFF2491 0.55 -0.8
550,621 - GFF2491 0.55 -0.5
550,628 + GFF2491 0.56 -0.2
550,628 + GFF2491 0.56 -0.2
550,629 - GFF2491 0.56 +0.0
550,629 - GFF2491 0.56 -0.1
550,629 - GFF2491 0.56 +0.2
550,629 - GFF2491 0.56 -1.0
550,629 - GFF2491 0.56 +0.2
550,629 - GFF2491 0.56 +0.5
550,721 + GFF2491 0.64 +0.4
550,722 - GFF2491 0.64 -0.4
550,722 - GFF2491 0.64 -0.1
550,722 - GFF2491 0.64 -1.0
550,722 - GFF2491 0.64 +0.9
550,722 - GFF2491 0.64 -0.2
550,841 + GFF2491 0.74 +0.9
550,841 + GFF2491 0.74 -0.1
550,889 + GFF2491 0.79 +0.4
550,889 + GFF2491 0.79 -0.2
550,889 + GFF2491 0.79 -2.0
550,889 + GFF2491 0.79 -0.1
550,889 + GFF2491 0.79 +0.4
550,889 + GFF2491 0.79 +0.9
550,889 + GFF2491 0.79 -0.1
550,890 - GFF2491 0.79 -0.0
550,890 - GFF2491 0.79 +0.3
551,140 + +0.2
551,141 - -0.7
551,141 - -0.3
551,415 + GFF2492 0.27 -0.3
551,415 + GFF2492 0.27 -0.6
551,416 - GFF2492 0.27 -0.6
551,416 - GFF2492 0.27 +1.5
551,416 - GFF2492 0.27 -0.0
551,416 - GFF2492 0.27 +0.7
551,416 - GFF2492 0.27 +0.6
551,416 - GFF2492 0.27 -1.0
551,828 + GFF2492 0.69 +0.0
551,828 + GFF2492 0.69 +0.4
551,829 - GFF2492 0.69 -0.1
551,829 - GFF2492 0.69 -0.3

Or see this region's nucleotide sequence