Strain Fitness in Variovorax sp. SCN45 around GFF248

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF247 and GFF248 are separated by 274 nucleotidesGFF248 and GFF249 are separated by 62 nucleotides GFF247 - ATP-dependent helicase HrpA, at 274,331 to 278,116 GFF247 GFF248 - Cell division protein FtsH (EC 3.4.24.-), at 278,391 to 280,544 GFF248 GFF249 - N-acetylglutamate synthase (EC 2.3.1.1), at 280,607 to 281,953 GFF249 Position (kb) 278 279 280 281Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 277.564 kb on - strand, within GFF247at 277.719 kb on + strand, within GFF247at 277.719 kb on + strand, within GFF247at 277.720 kb on - strand, within GFF247at 277.782 kb on + strandat 277.782 kb on + strandat 277.782 kb on + strandat 277.783 kb on - strandat 277.783 kb on - strandat 277.783 kb on - strandat 277.783 kb on - strandat 278.232 kb on + strandat 278.298 kb on - strandat 278.301 kb on + strandat 278.302 kb on - strandat 278.309 kb on - strandat 278.329 kb on + strandat 278.329 kb on + strandat 278.329 kb on + strandat 278.330 kb on - strandat 278.330 kb on - strandat 278.348 kb on + strandat 278.462 kb on + strandat 278.514 kb on + strandat 278.515 kb on - strandat 278.515 kb on - strandat 278.520 kb on + strandat 278.520 kb on + strandat 278.520 kb on + strandat 278.520 kb on + strandat 278.520 kb on + strandat 278.520 kb on + strandat 278.520 kb on + strandat 278.521 kb on - strandat 278.521 kb on - strandat 278.521 kb on - strandat 278.521 kb on - strandat 278.691 kb on + strand, within GFF248at 278.691 kb on + strand, within GFF248at 278.691 kb on + strand, within GFF248at 278.692 kb on - strand, within GFF248at 278.692 kb on - strand, within GFF248at 278.799 kb on + strand, within GFF248at 278.800 kb on - strand, within GFF248at 278.800 kb on - strand, within GFF248at 278.800 kb on - strand, within GFF248at 278.800 kb on - strand, within GFF248at 278.800 kb on - strand, within GFF248at 278.850 kb on + strand, within GFF248at 279.081 kb on + strand, within GFF248at 279.081 kb on + strand, within GFF248at 279.082 kb on + strand, within GFF248at 279.082 kb on - strand, within GFF248at 279.288 kb on + strand, within GFF248at 279.289 kb on - strand, within GFF248at 279.333 kb on + strand, within GFF248at 279.333 kb on + strand, within GFF248at 279.333 kb on + strand, within GFF248at 279.333 kb on + strand, within GFF248at 279.333 kb on + strand, within GFF248at 279.334 kb on - strand, within GFF248at 279.334 kb on - strand, within GFF248at 279.334 kb on - strand, within GFF248at 279.334 kb on - strand, within GFF248at 279.334 kb on - strand, within GFF248at 279.334 kb on - strand, within GFF248at 279.334 kb on - strand, within GFF248at 279.489 kb on + strand, within GFF248at 279.489 kb on + strand, within GFF248at 279.489 kb on + strand, within GFF248at 279.490 kb on - strand, within GFF248at 279.490 kb on - strand, within GFF248at 279.490 kb on - strand, within GFF248at 279.490 kb on - strand, within GFF248at 279.490 kb on - strand, within GFF248at 279.513 kb on + strand, within GFF248at 279.514 kb on - strand, within GFF248at 279.514 kb on - strand, within GFF248at 279.514 kb on - strand, within GFF248at 279.514 kb on - strand, within GFF248at 279.514 kb on - strand, within GFF248at 279.514 kb on - strand, within GFF248at 279.514 kb on - strand, within GFF248at 279.514 kb on - strand, within GFF248at 279.514 kb on - strand, within GFF248at 279.514 kb on - strand, within GFF248at 279.547 kb on - strand, within GFF248at 279.603 kb on + strand, within GFF248at 279.604 kb on - strand, within GFF248at 279.604 kb on - strand, within GFF248at 279.604 kb on - strand, within GFF248at 279.615 kb on + strand, within GFF248at 279.616 kb on - strand, within GFF248at 279.745 kb on + strand, within GFF248at 279.906 kb on + strand, within GFF248at 279.906 kb on + strand, within GFF248at 279.972 kb on + strand, within GFF248at 279.972 kb on + strand, within GFF248at 279.973 kb on - strand, within GFF248at 279.973 kb on - strand, within GFF248at 279.981 kb on + strand, within GFF248at 279.981 kb on + strand, within GFF248at 279.982 kb on - strand, within GFF248at 279.982 kb on - strand, within GFF248at 279.982 kb on - strand, within GFF248at 279.982 kb on - strand, within GFF248at 279.982 kb on - strand, within GFF248at 279.982 kb on - strand, within GFF248at 279.982 kb on - strand, within GFF248at 279.982 kb on - strand, within GFF248at 279.982 kb on - strand, within GFF248at 280.137 kb on + strand, within GFF248at 280.137 kb on + strand, within GFF248at 280.137 kb on + strand, within GFF248at 280.137 kb on + strand, within GFF248at 280.137 kb on + strand, within GFF248at 280.137 kb on + strand, within GFF248at 280.138 kb on - strand, within GFF248at 280.138 kb on - strand, within GFF248at 280.138 kb on - strand, within GFF248at 280.138 kb on - strand, within GFF248at 280.138 kb on - strand, within GFF248at 280.422 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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277,564 - GFF247 0.85 -0.7
277,719 + GFF247 0.89 -1.0
277,719 + GFF247 0.89 -0.7
277,720 - GFF247 0.90 -2.3
277,782 + -1.4
277,782 + +0.9
277,782 + +0.5
277,783 - -1.5
277,783 - -0.3
277,783 - +0.2
277,783 - +0.9
278,232 + -1.7
278,298 - -0.5
278,301 + +0.6
278,302 - +0.2
278,309 - +0.1
278,329 + +0.1
278,329 + +0.9
278,329 + +0.9
278,330 - -0.7
278,330 - +0.2
278,348 + -0.8
278,462 + -0.4
278,514 + -1.1
278,515 - +1.7
278,515 - -0.1
278,520 + -0.7
278,520 + -0.2
278,520 + +0.2
278,520 + +1.9
278,520 + +0.1
278,520 + +0.2
278,520 + -1.5
278,521 - -0.3
278,521 - +0.2
278,521 - -1.0
278,521 - -0.0
278,691 + GFF248 0.14 +0.3
278,691 + GFF248 0.14 +0.0
278,691 + GFF248 0.14 +0.3
278,692 - GFF248 0.14 -1.1
278,692 - GFF248 0.14 -0.5
278,799 + GFF248 0.19 -0.7
278,800 - GFF248 0.19 -0.6
278,800 - GFF248 0.19 +0.2
278,800 - GFF248 0.19 +0.2
278,800 - GFF248 0.19 -2.0
278,800 - GFF248 0.19 -0.6
278,850 + GFF248 0.21 -1.0
279,081 + GFF248 0.32 -0.1
279,081 + GFF248 0.32 -0.3
279,082 + GFF248 0.32 -0.7
279,082 - GFF248 0.32 +4.4
279,288 + GFF248 0.42 -0.1
279,289 - GFF248 0.42 -0.9
279,333 + GFF248 0.44 -0.8
279,333 + GFF248 0.44 +0.3
279,333 + GFF248 0.44 -0.4
279,333 + GFF248 0.44 -0.6
279,333 + GFF248 0.44 +0.3
279,334 - GFF248 0.44 -0.7
279,334 - GFF248 0.44 +0.5
279,334 - GFF248 0.44 -0.3
279,334 - GFF248 0.44 +0.8
279,334 - GFF248 0.44 +1.2
279,334 - GFF248 0.44 -0.1
279,334 - GFF248 0.44 -0.1
279,489 + GFF248 0.51 +0.5
279,489 + GFF248 0.51 -0.4
279,489 + GFF248 0.51 -0.7
279,490 - GFF248 0.51 +1.9
279,490 - GFF248 0.51 -1.8
279,490 - GFF248 0.51 -0.1
279,490 - GFF248 0.51 -0.9
279,490 - GFF248 0.51 -0.2
279,513 + GFF248 0.52 -0.2
279,514 - GFF248 0.52 -0.3
279,514 - GFF248 0.52 +0.2
279,514 - GFF248 0.52 -0.1
279,514 - GFF248 0.52 -0.4
279,514 - GFF248 0.52 -0.4
279,514 - GFF248 0.52 +0.0
279,514 - GFF248 0.52 -0.5
279,514 - GFF248 0.52 +0.6
279,514 - GFF248 0.52 +0.0
279,514 - GFF248 0.52 +0.0
279,547 - GFF248 0.54 +1.9
279,603 + GFF248 0.56 -0.9
279,604 - GFF248 0.56 -0.5
279,604 - GFF248 0.56 -0.5
279,604 - GFF248 0.56 +1.5
279,615 + GFF248 0.57 -1.5
279,616 - GFF248 0.57 -0.9
279,745 + GFF248 0.63 +0.3
279,906 + GFF248 0.70 +0.0
279,906 + GFF248 0.70 -0.1
279,972 + GFF248 0.73 -0.1
279,972 + GFF248 0.73 -0.7
279,973 - GFF248 0.73 -0.1
279,973 - GFF248 0.73 -0.5
279,981 + GFF248 0.74 +1.4
279,981 + GFF248 0.74 -0.1
279,982 - GFF248 0.74 -0.3
279,982 - GFF248 0.74 -1.3
279,982 - GFF248 0.74 +0.7
279,982 - GFF248 0.74 -0.9
279,982 - GFF248 0.74 -0.5
279,982 - GFF248 0.74 -1.2
279,982 - GFF248 0.74 -0.4
279,982 - GFF248 0.74 -0.9
279,982 - GFF248 0.74 -0.4
280,137 + GFF248 0.81 -0.9
280,137 + GFF248 0.81 +0.8
280,137 + GFF248 0.81 +0.3
280,137 + GFF248 0.81 -0.3
280,137 + GFF248 0.81 +0.2
280,137 + GFF248 0.81 -0.4
280,138 - GFF248 0.81 +0.4
280,138 - GFF248 0.81 -1.7
280,138 - GFF248 0.81 +3.2
280,138 - GFF248 0.81 +0.3
280,138 - GFF248 0.81 -0.2
280,422 + -0.4

Or see this region's nucleotide sequence