Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2466 and GFF2467 are separated by 2 nucleotides GFF2467 and GFF2468 are separated by 16 nucleotides GFF2468 and GFF2469 are separated by 75 nucleotides GFF2469 and GFF2470 are separated by 2 nucleotides GFF2470 and GFF2471 are separated by 25 nucleotides
GFF2466 - no description, at 525,922 to 526,788
GFF2466
GFF2467 - Response regulator BaeR, at 526,791 to 527,507
GFF2467
GFF2468 - Outer membrane protein assembly factor YaeT, at 527,524 to 529,926
GFF2468
GFF2469 - hypothetical protein, at 530,002 to 530,610
GFF2469
GFF2470 - no description, at 530,613 to 530,798
GFF2470
GFF2471 - Outer membrane porin protein 32 precursor, at 530,824 to 531,981
GFF2471
Position (kb) 527
528
529
530 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 526.564 kb on + strand, within GFF2466 at 527.192 kb on - strand, within GFF2467 at 527.192 kb on - strand, within GFF2467 at 527.603 kb on + strand at 527.621 kb on + strand at 527.765 kb on + strand, within GFF2468 at 527.765 kb on + strand, within GFF2468 at 527.765 kb on + strand, within GFF2468 at 527.766 kb on - strand, within GFF2468 at 528.005 kb on + strand, within GFF2468 at 528.005 kb on + strand, within GFF2468 at 528.006 kb on - strand, within GFF2468 at 528.026 kb on + strand, within GFF2468 at 528.027 kb on - strand, within GFF2468 at 528.041 kb on + strand, within GFF2468 at 528.041 kb on + strand, within GFF2468 at 528.041 kb on + strand, within GFF2468 at 528.041 kb on + strand, within GFF2468 at 528.042 kb on - strand, within GFF2468 at 528.042 kb on - strand, within GFF2468 at 528.257 kb on + strand, within GFF2468 at 528.258 kb on - strand, within GFF2468 at 528.263 kb on + strand, within GFF2468 at 528.264 kb on - strand, within GFF2468 at 528.264 kb on - strand, within GFF2468 at 528.285 kb on - strand, within GFF2468 at 528.285 kb on - strand, within GFF2468 at 528.285 kb on - strand, within GFF2468 at 528.314 kb on + strand, within GFF2468 at 528.405 kb on - strand, within GFF2468 at 528.405 kb on - strand, within GFF2468 at 528.405 kb on - strand, within GFF2468 at 528.422 kb on + strand, within GFF2468 at 528.422 kb on + strand, within GFF2468 at 528.423 kb on - strand, within GFF2468 at 528.423 kb on - strand, within GFF2468 at 528.423 kb on - strand, within GFF2468 at 528.423 kb on - strand, within GFF2468 at 528.485 kb on + strand, within GFF2468 at 528.485 kb on + strand, within GFF2468 at 528.521 kb on + strand, within GFF2468 at 528.521 kb on + strand, within GFF2468 at 528.521 kb on + strand, within GFF2468 at 528.521 kb on + strand, within GFF2468 at 528.522 kb on - strand, within GFF2468 at 528.551 kb on + strand, within GFF2468 at 528.873 kb on - strand, within GFF2468 at 529.028 kb on + strand, within GFF2468 at 529.028 kb on + strand, within GFF2468 at 529.226 kb on + strand, within GFF2468 at 529.226 kb on + strand, within GFF2468 at 529.227 kb on - strand, within GFF2468 at 529.227 kb on - strand, within GFF2468 at 529.227 kb on - strand, within GFF2468 at 529.275 kb on - strand, within GFF2468 at 529.475 kb on + strand, within GFF2468 at 529.494 kb on - strand, within GFF2468 at 529.754 kb on + strand at 529.754 kb on + strand at 529.754 kb on + strand at 529.754 kb on + strand at 529.755 kb on - strand at 530.060 kb on - strand at 530.114 kb on + strand, within GFF2469 at 530.159 kb on + strand, within GFF2469 at 530.159 kb on + strand, within GFF2469 at 530.159 kb on + strand, within GFF2469 at 530.159 kb on + strand, within GFF2469 at 530.160 kb on - strand, within GFF2469 at 530.160 kb on - strand, within GFF2469 at 530.160 kb on - strand, within GFF2469 at 530.241 kb on - strand, within GFF2469 at 530.241 kb on - strand, within GFF2469 at 530.430 kb on - strand, within GFF2469 at 530.430 kb on - strand, within GFF2469
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 526,564 + GFF2466 0.74 +0.3 527,192 - GFF2467 0.56 +0.9 527,192 - GFF2467 0.56 -0.7 527,603 + +1.1 527,621 + -0.0 527,765 + GFF2468 0.10 +0.1 527,765 + GFF2468 0.10 -1.1 527,765 + GFF2468 0.10 +0.0 527,766 - GFF2468 0.10 +0.3 528,005 + GFF2468 0.20 +0.3 528,005 + GFF2468 0.20 -1.6 528,006 - GFF2468 0.20 -0.9 528,026 + GFF2468 0.21 -0.7 528,027 - GFF2468 0.21 -0.4 528,041 + GFF2468 0.22 -0.1 528,041 + GFF2468 0.22 +1.9 528,041 + GFF2468 0.22 +0.0 528,041 + GFF2468 0.22 -1.8 528,042 - GFF2468 0.22 -0.4 528,042 - GFF2468 0.22 +0.1 528,257 + GFF2468 0.31 +0.1 528,258 - GFF2468 0.31 -0.7 528,263 + GFF2468 0.31 +0.2 528,264 - GFF2468 0.31 +0.1 528,264 - GFF2468 0.31 +0.5 528,285 - GFF2468 0.32 +0.7 528,285 - GFF2468 0.32 +0.1 528,285 - GFF2468 0.32 -0.6 528,314 + GFF2468 0.33 -0.1 528,405 - GFF2468 0.37 +1.2 528,405 - GFF2468 0.37 -1.4 528,405 - GFF2468 0.37 +0.3 528,422 + GFF2468 0.37 -0.2 528,422 + GFF2468 0.37 +0.7 528,423 - GFF2468 0.37 +0.2 528,423 - GFF2468 0.37 -1.7 528,423 - GFF2468 0.37 -0.4 528,423 - GFF2468 0.37 -1.2 528,485 + GFF2468 0.40 -0.4 528,485 + GFF2468 0.40 +0.1 528,521 + GFF2468 0.41 +0.9 528,521 + GFF2468 0.41 -0.1 528,521 + GFF2468 0.41 -0.1 528,521 + GFF2468 0.41 +2.9 528,522 - GFF2468 0.42 +0.3 528,551 + GFF2468 0.43 +0.0 528,873 - GFF2468 0.56 +1.9 529,028 + GFF2468 0.63 +0.3 529,028 + GFF2468 0.63 +0.1 529,226 + GFF2468 0.71 +1.5 529,226 + GFF2468 0.71 +0.0 529,227 - GFF2468 0.71 +2.1 529,227 - GFF2468 0.71 -0.3 529,227 - GFF2468 0.71 -0.2 529,275 - GFF2468 0.73 +0.1 529,475 + GFF2468 0.81 -0.5 529,494 - GFF2468 0.82 -0.2 529,754 + -0.5 529,754 + -0.8 529,754 + -0.1 529,754 + +0.5 529,755 - +0.0 530,060 - +0.1 530,114 + GFF2469 0.18 -0.3 530,159 + GFF2469 0.26 -0.8 530,159 + GFF2469 0.26 -0.9 530,159 + GFF2469 0.26 -0.4 530,159 + GFF2469 0.26 -1.4 530,160 - GFF2469 0.26 +0.1 530,160 - GFF2469 0.26 -0.3 530,160 - GFF2469 0.26 -0.4 530,241 - GFF2469 0.39 -0.8 530,241 - GFF2469 0.39 +0.6 530,430 - GFF2469 0.70 -0.6 530,430 - GFF2469 0.70 -0.1
Or see this region's nucleotide sequence