Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2458 and GFF2459 overlap by 8 nucleotides GFF2459 and GFF2460 overlap by 4 nucleotides
GFF2458 - CzcABC family efflux RND transporter, membrane fusion protein, at 514,478 to 515,608
GFF2458
GFF2459 - CzcABC family efflux RND transporter, transmembrane protein, at 515,601 to 518,732
GFF2459
GFF2460 - Heavy metal RND efflux outer membrane protein, CzcC family, at 518,729 to 520,042
GFF2460
Position (kb) 515
516
517
518
519 Strain fitness (log2 ratio) -1
0
1
2
3 at 514.955 kb on + strand, within GFF2458 at 514.955 kb on + strand, within GFF2458 at 514.956 kb on - strand, within GFF2458 at 515.063 kb on + strand, within GFF2458 at 515.064 kb on - strand, within GFF2458 at 515.064 kb on - strand, within GFF2458 at 515.124 kb on - strand, within GFF2458 at 515.288 kb on + strand, within GFF2458 at 515.289 kb on - strand, within GFF2458 at 515.289 kb on - strand, within GFF2458 at 515.457 kb on - strand, within GFF2458 at 515.457 kb on - strand, within GFF2458 at 515.676 kb on + strand at 515.988 kb on + strand, within GFF2459 at 515.988 kb on + strand, within GFF2459 at 515.989 kb on - strand, within GFF2459 at 516.012 kb on + strand, within GFF2459 at 516.012 kb on + strand, within GFF2459 at 516.019 kb on - strand, within GFF2459 at 516.183 kb on + strand, within GFF2459 at 516.273 kb on + strand, within GFF2459 at 516.273 kb on + strand, within GFF2459 at 516.274 kb on - strand, within GFF2459 at 516.274 kb on - strand, within GFF2459 at 516.972 kb on + strand, within GFF2459 at 516.972 kb on + strand, within GFF2459 at 516.972 kb on + strand, within GFF2459 at 516.973 kb on - strand, within GFF2459 at 517.245 kb on + strand, within GFF2459 at 517.365 kb on + strand, within GFF2459 at 517.365 kb on + strand, within GFF2459 at 517.365 kb on + strand, within GFF2459 at 517.365 kb on + strand, within GFF2459 at 517.366 kb on - strand, within GFF2459 at 517.453 kb on - strand, within GFF2459 at 517.513 kb on - strand, within GFF2459 at 517.836 kb on + strand, within GFF2459 at 517.836 kb on + strand, within GFF2459 at 517.836 kb on + strand, within GFF2459 at 517.837 kb on - strand, within GFF2459 at 518.634 kb on + strand at 518.834 kb on + strand at 518.835 kb on - strand at 519.579 kb on - strand, within GFF2460
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 514,955 + GFF2458 0.42 -0.3 514,955 + GFF2458 0.42 -0.4 514,956 - GFF2458 0.42 -0.9 515,063 + GFF2458 0.52 +0.9 515,064 - GFF2458 0.52 +2.9 515,064 - GFF2458 0.52 -0.1 515,124 - GFF2458 0.57 +0.3 515,288 + GFF2458 0.72 +0.2 515,289 - GFF2458 0.72 -0.3 515,289 - GFF2458 0.72 -0.4 515,457 - GFF2458 0.87 -0.1 515,457 - GFF2458 0.87 +1.0 515,676 + -0.3 515,988 + GFF2459 0.12 -0.1 515,988 + GFF2459 0.12 -0.7 515,989 - GFF2459 0.12 +0.9 516,012 + GFF2459 0.13 +0.2 516,012 + GFF2459 0.13 +0.5 516,019 - GFF2459 0.13 -0.4 516,183 + GFF2459 0.19 -1.3 516,273 + GFF2459 0.21 +0.1 516,273 + GFF2459 0.21 +1.4 516,274 - GFF2459 0.21 +3.2 516,274 - GFF2459 0.21 +0.6 516,972 + GFF2459 0.44 +0.3 516,972 + GFF2459 0.44 +0.2 516,972 + GFF2459 0.44 +0.4 516,973 - GFF2459 0.44 +0.2 517,245 + GFF2459 0.52 +0.3 517,365 + GFF2459 0.56 +1.6 517,365 + GFF2459 0.56 +0.9 517,365 + GFF2459 0.56 +0.0 517,365 + GFF2459 0.56 +0.8 517,366 - GFF2459 0.56 +0.2 517,453 - GFF2459 0.59 +0.3 517,513 - GFF2459 0.61 +0.8 517,836 + GFF2459 0.71 -0.1 517,836 + GFF2459 0.71 +1.3 517,836 + GFF2459 0.71 +0.9 517,837 - GFF2459 0.71 +0.9 518,634 + -0.7 518,834 + +0.1 518,835 - -0.2 519,579 - GFF2460 0.65 -0.3
Or see this region's nucleotide sequence