Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2447 and GFF2448 are separated by 131 nucleotides GFF2448 and GFF2449 are separated by 18 nucleotides
GFF2447 - beta-lactamase-like protein, at 501,268 to 502,593
GFF2447
GFF2448 - Acyl-CoA dehydrogenase, at 502,725 to 503,942
GFF2448
GFF2449 - Beta-ureidopropionase (EC 3.5.1.6), at 503,961 to 505,217
GFF2449
Position (kb) 502
503
504 Strain fitness (log2 ratio) -1
0
1
2 at 501.735 kb on - strand, within GFF2447 at 502.113 kb on - strand, within GFF2447 at 502.316 kb on + strand, within GFF2447 at 502.317 kb on - strand, within GFF2447 at 502.317 kb on - strand, within GFF2447 at 502.319 kb on + strand, within GFF2447 at 502.319 kb on + strand, within GFF2447 at 502.319 kb on + strand, within GFF2447 at 502.320 kb on - strand, within GFF2447 at 502.693 kb on - strand at 502.857 kb on + strand, within GFF2448 at 502.857 kb on + strand, within GFF2448 at 503.018 kb on - strand, within GFF2448 at 503.211 kb on + strand, within GFF2448 at 503.211 kb on + strand, within GFF2448 at 503.235 kb on + strand, within GFF2448 at 503.235 kb on + strand, within GFF2448 at 503.235 kb on + strand, within GFF2448 at 503.236 kb on - strand, within GFF2448 at 503.236 kb on - strand, within GFF2448 at 503.394 kb on + strand, within GFF2448 at 503.394 kb on + strand, within GFF2448 at 503.394 kb on + strand, within GFF2448 at 503.394 kb on + strand, within GFF2448 at 503.395 kb on - strand, within GFF2448 at 503.395 kb on - strand, within GFF2448 at 503.395 kb on - strand, within GFF2448 at 503.395 kb on - strand, within GFF2448 at 503.850 kb on + strand at 503.851 kb on - strand at 503.851 kb on - strand at 503.857 kb on - strand at 503.897 kb on - strand at 503.897 kb on - strand at 503.940 kb on + strand at 503.940 kb on + strand at 504.045 kb on + strand at 504.045 kb on + strand at 504.046 kb on - strand at 504.061 kb on - strand at 504.115 kb on + strand, within GFF2449 at 504.226 kb on - strand, within GFF2449 at 504.229 kb on + strand, within GFF2449 at 504.229 kb on + strand, within GFF2449 at 504.229 kb on + strand, within GFF2449 at 504.229 kb on + strand, within GFF2449 at 504.230 kb on - strand, within GFF2449 at 504.230 kb on - strand, within GFF2449 at 504.230 kb on - strand, within GFF2449 at 504.433 kb on + strand, within GFF2449 at 504.433 kb on + strand, within GFF2449 at 504.434 kb on - strand, within GFF2449 at 504.434 kb on - strand, within GFF2449 at 504.434 kb on - strand, within GFF2449 at 504.434 kb on - strand, within GFF2449 at 504.553 kb on + strand, within GFF2449 at 504.554 kb on - strand, within GFF2449 at 504.743 kb on - strand, within GFF2449 at 504.910 kb on + strand, within GFF2449
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 501,735 - GFF2447 0.35 -0.3 502,113 - GFF2447 0.64 +0.3 502,316 + GFF2447 0.79 -0.0 502,317 - GFF2447 0.79 -0.1 502,317 - GFF2447 0.79 +0.4 502,319 + GFF2447 0.79 -0.0 502,319 + GFF2447 0.79 +1.0 502,319 + GFF2447 0.79 +0.1 502,320 - GFF2447 0.79 +0.4 502,693 - +0.4 502,857 + GFF2448 0.11 -1.1 502,857 + GFF2448 0.11 +1.9 503,018 - GFF2448 0.24 -1.0 503,211 + GFF2448 0.40 +0.2 503,211 + GFF2448 0.40 +0.4 503,235 + GFF2448 0.42 +1.0 503,235 + GFF2448 0.42 +1.1 503,235 + GFF2448 0.42 +0.5 503,236 - GFF2448 0.42 -0.1 503,236 - GFF2448 0.42 +1.1 503,394 + GFF2448 0.55 -1.3 503,394 + GFF2448 0.55 -0.7 503,394 + GFF2448 0.55 -0.5 503,394 + GFF2448 0.55 +0.8 503,395 - GFF2448 0.55 +0.6 503,395 - GFF2448 0.55 +1.3 503,395 - GFF2448 0.55 -0.2 503,395 - GFF2448 0.55 +0.2 503,850 + +0.4 503,851 - -0.0 503,851 - +0.7 503,857 - -0.1 503,897 - -0.4 503,897 - +0.4 503,940 + -0.9 503,940 + -0.8 504,045 + +1.0 504,045 + -0.0 504,046 - -1.7 504,061 - +0.0 504,115 + GFF2449 0.12 +0.1 504,226 - GFF2449 0.21 +0.3 504,229 + GFF2449 0.21 +0.1 504,229 + GFF2449 0.21 -0.1 504,229 + GFF2449 0.21 -0.4 504,229 + GFF2449 0.21 +0.3 504,230 - GFF2449 0.21 +1.2 504,230 - GFF2449 0.21 -0.3 504,230 - GFF2449 0.21 -0.8 504,433 + GFF2449 0.38 -0.2 504,433 + GFF2449 0.38 +0.8 504,434 - GFF2449 0.38 +1.9 504,434 - GFF2449 0.38 -0.1 504,434 - GFF2449 0.38 +0.7 504,434 - GFF2449 0.38 -0.4 504,553 + GFF2449 0.47 +0.1 504,554 - GFF2449 0.47 -0.4 504,743 - GFF2449 0.62 +1.4 504,910 + GFF2449 0.75 +0.0
Or see this region's nucleotide sequence